atmin (atmin)


Basic Information

Item Value
gene id atmin
gene name atmin
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28782024 ~ 28790810 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914369.2
GGGTCGACGTCGCTGGGAGGCGAGGAGAAGCTGCGCGAGAGCAGAAAGGAATCCAACATGGCCGCCACCGCAGCGGGTGACTCGGGCTGCAGCGGCGCGGATCGCAGCGAGGAGCCGCCGGCTCAGTCCCGGGAGATCATTAAACCCTCCATAACGGAGCTGACCAAAGTGCGGACCAACATCCTGTGTACGGTGCAAGGATGCGGCAAGATCCTCCCCAACACCCCGGCGCTCAACATGCACCTCGTCAAGTCCCACAGAGTCAAGGAGGGTATCGTCAACCCTACGGTACGAAAGGATATGAAAGGTTCACAGAAGCTCTACTGTTGTCCAATAGAGGGCTGTCCAAGAGGACCTAACAGACCTTTCTCCCAGTTTGCACTGGTTAAGCAGCATTTTATGAAGATGCACGCAGAGAAGAAGCACAAATGTGTAAAGTGCAACAATGGATACAGCACAGAATGGGACTTGAAGAGGCACGCCGAGGATTGTGGAAGGACCTACAGTTGTACATGCGGTTGTCCGTACGCAAGTCGAACGGCACTGTTGTCTCACATCTACAGAACTGGTCATGAGGTTCCCAAAGAGCATAGGTATCCACCcgtcaagaaaagaaaaatggagaaactATCTCGCAGTGCAACAAAACATGAGCCTAATGGACAAACTTATGAAATGGAAATCACAGAAGGAGCAATTCCTGCTGAAGGAGCATCCCACACTCCAGATTTACCACAGCACAACCCCGTCCACTCTAAAAACCTCCAAAAGCTTCTCCTGCCCATGCCTAAAGTGGCTTTGGTCAATGTCCCTGTGATGCAGCTGGCTCACTTGCCTGTGCTTCTCCCGCCAGCAGAGAGCGGTGCCTTGGGGTCTGTGGTCTTGACAGTGGACACGCAAGGCTCTGTAAGTACCTTGCACCTCATGCCTCAGTCGCTTGGGGCCGTGGTACCTCCGTTAAACACTAAAAGTTTCAAAGAAACCATGCCCATTTCCAAATCAAACCTGGATGCTATCAGTACAGGGATCCAAGTCAATTTAGAAAGCCCGGGCTCAGTTGATGAACCAGTTAATGATTTGGGATCGAGAAGTAAAAGCACCTCAACCAATATTCAAACAGATATCTCATTCCTCAGTAAGGGATCTGTCGGAGGAGTCAATATCGGTCTTGCAAGTGAGGCCTCGGTTTCCTCTGGTTCTCAAACTGACATTAGCGTGAGTGCCCAGATCCAGCTACCGGTCAGTGTGCAAACTCAAACGTTCCCCTTGAGGTCCAAAGTCACATCCTCCATTGGGGCACAAACTGAAACTCTCAGTCAGATATCTTTCCCTTCTGGTAACAAAACGAGGGAAACTCAGACAAATTGCTCCCCAGCAGCTTCAGTAAATAAGACCCAAATGGACCAAGCTATAATGTGTGCAAATCTTTTTGATTCCGACATGCTCAGCGTCTCTACGCAGACTACAGTACATGGTGGACCTTTTGGCACCAGTGACCTTGATCCCATGAGCACAGAATCTGGATTTTTTGAAGACAAAACTGCATCACCCTTGTGCTTTGGAGCTCAGAGAGACATTTTACACCAAAACACGGTAGCTGACAATCAGACTCAGACAATGAACCTTTTCAGTGATCTGGAGAACATCCTTTCTGACAGCATGGCAAGTGGAGCTCAAAGCTGTGGATCAGGCCTGGTTCCAGTGCAAGAGCAGCACACGGGCATCGACTTTGACATTGAAGATTTCCTCAATGCGACTCATATTCAGACTCAGACAGACGAGAGTGCCTTGGGAGGCTTGAGTTCAGAGACACCCCTGGAGCTCCTCGACATTGAAACGCAAACCGACTTCCTCCTGCTTGACAACCTTGGGGATGGTCATCATAGTGATGTTGGCACCAGGGTCCAAACAAGTGATCTTGAGCTGGAGATGTTTGACACGCAAACCCAAACAGATTTGAACTTTCTACTTGACCCCAGTAGTCACATGTCCTTCGGCAGCATCCTAAGACACTCCAGCTTCAACATGAGCACCGAGTCCTCAGACACCGAGACCCAGACAGACACCAgggctcctcctcctcctccaccacctcctctGCCCCTGTCTTGTTCCAGTGATGGACAGATCACACTTAGCAGCACTGAAACTCAGACGGTCTCCAGTTCCTCCAGCCTGGGCCACCTTTTCCTAACCAGCAACGAGACACAGACAGTCATGGACGATTTCCTGTCAGCAGACCTGGCTTGGAATGTGGAGTCCCATTTTAGTTCGGTGGAAACGCAAACCGGTGAAGATCTCCTGTCTTTGTTTCGGCACTCGGACAAAGCCATCAGCTGAGCTGTCTGCCATTATAGCTTGTCTGTTGCAGGTGTGTCGTAGGCAACATTACGAAGGAGCTGTTTCTGATGACTTGCACAAAGGTGGATGATTTGGGCCAGCAGATGGAGTTCTCCCAAACGCTCATCACCATAAAGGGCTCAGTTTGGAAGGCACTTGTGGCAGTTGAGCTCACTTGTAGTTATTCAGCATCTTGAGTCATTCCGCTGCAAATAGTCTCAAAGCTTAAAGAGCTTTCAGTAGCCCTATTCAGACGGGATTAGGTTTACATATAGACCTGaattaatttcatcatttgTATTTGCATCATTTGCCACTCTCCTTTTATTTCCAGATCTGTCTCGGTAGTATTTTTCTCATGAAAATTACAGACCAACTCTGAGGTCGACTGGTCATTTTAGTCTGATCTAGAAAGTTGTTTGGTGACTTTGTGACGTGTTGGCATCTTctgttggaatttttttttttttttttttttttggggtccACTGCTACTCACCATATTTAGTCATCTAGTCTGCGTATCTTCTTCCTGACATGTGAAAACATGTATCCTCTCTCAACAACAGAGTGCATTagcaagagaaataaaataaaataaattagaagAGCATGATCCTAATTTAAAGGTTGATTAAAGGAGCTGTTATAATGTCAGTTACTGTATTAAACAACTTTATATACGTATATTACACAATATCATGCAAATTTAGTTTTCTAATAGTGGTGTGaatctccctctttccctcagCACCGATTCGATTTGATTGAGGTCTGATCCAGTCTGATTCAGTTtgaaattaaactgtaatttttcttcaggaaagaggaattcttggttatattttgttttattaactttgagagagggACTAAAGGAGCAACCGGTGAGGGAGAATAACATAATTGATGATAGGAATTAGCTTGTTTTGTATACGTTCCACAACGTGAagtgtaacaataaacagataaaaagtaggACCTGTAATTCTTTAATCCCATCACCCCATCTATAGTCAATGAGAACACCCGTGAAACAATCTTTTACTTTTGCTCTAAAAGAAATTGGAGCCATGAACCGGGGAGTTTGCATCAAATTTCAGTAGCAGGATGGGATCATTTGACCATGAGTGCGCCAAACGATCCAGTTTCATAGACAAAACAACCTGCAGAAACTCGTCCCTCCTGCGTTCACGTAATATCCACCTGGGCACAAGTGGAGACACGTAAAGATGTCACTGCAGACGTCGCTGCAGACGTCCCTCAGAGAAACTAACCCAGTCTAAATAGGGCTTTTAGCTGCACTTTATCATTTCATGGCCGTCATTTGACTGCTCCTTAACgtgtttacttttatttgcacatttgttgaaaatggtctgtttttatttccgTTAGAACAGATTATATCATTTTCGGTGATGATGATAGTGCTACTATGTAGTCGTAAATTTACAGTGTGGCACAAGTCTAAAATTATTGACTAGAAATGATGTGTGTTCATCTTATAATCAGATTTCTTGTgaaatttgtatattttcttgTTTGGCTGCACTGTAAGGATATTTTTGTGTTGTActtaattttttctttgttgttgttacGTTTAAGTTAGTGTCTAATTGTTAAACAGATGTCTGTTACTGTATTTAAACAATTTTGTTTCATACAGATATTTTTGCTCTGGCTACAGCAGTATATTATCTTGTATGGCTCATAAAGCAACCGGTTTAAATTATTCTAATGTATGCATATTTATGCATGTCGCAAATATCAGTGACCTTTAACAATTGAGCTCACTACGCTATTATTACGATGATTTGCATTCTGTACTGTGAGTGATTTAACATGCAAATCGCAGTTGTTTACAGCAAGACGGAACCTTTAACGAAATATATTCACTGGAAGCATGTAACATTTCTCAGAATGTAGATGTTTTCACTTTAAGCACTACATGCGATCCATGATTAGCTTTTGTGTTGGTGCCTTAATTTAAGTGGTAAATATAAACTCATTTGATGTAAAGTTACAGCGAACAtcgctgttttattttaaagagctagtgttcctttctctttcttctgttctttccatttttctctttctgaacaCTTTCAAGTGTATTTATTTCCATGTTTATTCATCATATTGCACGCCATATTCTTTGCCTGCCATTGCCTCGGcttatttcagtatttataaCGTAACGTGTTATACTCTGCCTGCTTTTggtttgtcatttatttatatttctaaatcCAGCTTTCCACAAGCAACAGAATGTAAATGACACTGTGTTGCATTGTAACCAaaaggttttctttttgtttcagtgCTCAGCCAAGGCCGACATTTGCATCCAGCCACTATATACGCTAGCAGGAACGAACAAAAGCATATCGCTGTAGATTACTTGAAATTGTCAGCATACACTCTTGGTTTTCAGTAGAGCGTGCATGCAGTCCTTTTTGTGCCAAGAACATGTCCTGAGTTcaattacatttgtttttgttttgtttttttctttgttttttttgttctttatcgtttctaatattaaaaacatgtctGAAGTTGGTCATGTGCATTCTTTAGGGTTTGATGTATAAGATGAACcctgtgttgttttgttgtttaggCTAGGCTGCAGCAGATgctcaaaataaaatactgtcaAAAGAAA

Function

symbol description
atmin Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ATMIN (ATM interactor).

NR:

description
PREDICTED: ATM interactor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914369.2 True 5023 mRNA 0.43 4 28782024 28790810

Neighbor

gene id symbol gene type direction distance location
LOC113526572 LOC108264241 coding downstream 7984 28769625 ~ 28774040 (-)
gse1 gse1 coding downstream 70089 28467758 ~ 28711935 (-)
LOC113526963 LOC108264246,LOC107731261,LOC107663352,LOC107565335,LOC107572641,LOC108412231,LOC103374647 coding downstream 329709 28448739 ~ 28452315 (-)
dusp22a ds22a,LOC105892932,LOC108434600,LOC106562285 coding downstream 335086 28423797 ~ 28446938 (-)
irf8 irf8 coding downstream 359039 28415135 ~ 28422985 (-)
cenpn cenpn coding upstream 981 28791791 ~ 28799363 (-)
LOC113526432 cdyl2,LOC106562298 coding upstream 17297 28808107 ~ 28852636 (-)
mafa maf,LOC102790406,LOC101173775,LOC102192535,LOC102298902,LOC100702616,LOC107381304 coding upstream 401571 29192381 ~ 29205443 (-)
ppfibp2a LOC108264606,LOC108434021 coding upstream 504076 29294886 ~ 29330953 (-)
syt9a syt9a,LOC108264032,LOC108433937,LOC107728097,LOC107567811,LOC107663989,LOC107689032,LOC107554003,LOC107741892 coding upstream 554525 29345335 ~ 29369551 (-)
G106713 NA non-coding downstream 3006 28764739 ~ 28779018 (-)
G106705 NA non-coding downstream 20287 28761518 ~ 28761737 (-)
G106682 NA non-coding downstream 72454 28707899 ~ 28709570 (-)
G106681 NA non-coding downstream 74282 28707130 ~ 28707742 (-)
G106678 NA non-coding downstream 84227 28695559 ~ 28697797 (-)
G106772 NA non-coding upstream 14223 28805033 ~ 28805430 (-)
G106951 NA non-coding upstream 411197 29202007 ~ 29202844 (-)
LOC113526826 NA non-coding upstream 482267 29273077 ~ 29280183 (-)
G107193 NA non-coding upstream 889453 29680263 ~ 29707900 (-)
G107191 NA non-coding upstream 933304 29724114 ~ 29724377 (-)
si:dkey-151j17.4 NA other downstream 1621925 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 2173685 26569085 ~ 26608339 (-)
G105376 NA other downstream 2541019 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 3233096 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 3702512 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 829989 29620799 ~ 29714001 (-)
G107525 NA other upstream 1552721 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 1937234 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 1994783 30785593 ~ 30849697 (-)
G107803 NA other upstream 2025769 30816579 ~ 30820422 (-)

Expression


Co-expression Network