fosb (fosb,LOC108433461,LOC107757073,LOC107554470)


Basic Information

Item Value
gene id fosb
gene name fosb,LOC108433461,LOC107757073,LOC107554470
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24680767 ~ 24686250 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914376.2
GATGGCTTCATTCAGAAGACGAGGGACGCCGGCTCGCGCGCACAAAACGCTGTTTATTATCGCTGACCAAACACGCTGCGGACATTTTTTTCATGGATTTATAAATGCACACTTCGAAAAAAAGGGAATCTTTTAGGGATTGTGATCTCGCCAGCCAGGGTGGACGTCTCCGCTTTGGAGTTGTAAACTTGTTTCCCCCCAACGCAGAACTGGATTGCCATCTTAATGCAACTTTTTTGGAAAGACACGAAAGGCATCTTGACTGACTCTTCAAGTAAATCTTGTTACGACAGTGCACTAGAAGGCCAAATCTTTCGCTGGGCGCCAGGTGACGTGCCATTTTCGCCGGGAGCGAGCGCTTTCTCGGTTCCACTCGGCTCTGCCGGGGAGATGTTCCAGGGGTTTCCCGGTGACCCGGACAGCGGCTCCCGTGGAAGTTCCTCTCCGTCGGTCGAATCTCAGTACCTGTCTTCGGTGGACTCCTTCGGGAGCCCCTCCACCACCACTGCACCACAAGAGTGTGTATCTGCCGCTGGAGGTGTAGGGGTGGGTGGCGGGTCAGCTGGCAGCGCTCCAGGGGTGGACATGCCTGGCTCCTTCGTTCCCACAGTGACTGCCATCACCACAAGTCAGGACCTGCAGTGGATGGTGCAACCCACCCTCATCTCCTCTGTGGCTCCAGGGCAGAGTGGCACAGGTACGACCACCATGACCCAGTCGGTGGCCCTGGACCCATACGACATGCCAGGGCCAAGCTTCTCCTCCGGCTCGGGCTTCACTCCTCCCAGCTCGGACACCCCAGGTCCCTTGCGCCAGTCAAGGAGCCGCCGGCGCACGCGTGACGAAACGCTGACtccagaggaggaagagaagaggcgcgtcaggagagagagaaacaaactgGCCGCTGCCAAGTGTCGCAATCGACGGCGTGAGCTTACAGACAGGCTACAGTCGGAAACCGATAtgctggaggaggagaaggcCGAGCTGGAGGCTGAGATCTCAGAgctgcagaaggagaaggagcgTCTGGAGTTTGTCCTCATCACCCATCAGCCGAGCTGCAAGATCCCTTAccaggaggagcagcagcagacGCCGGCTCCTCCTCCGCCTCCATCCTCCTCTGTGGCAGTGGTGGGTTTGACTGTGAAGGAGGATGCGTTCTACCTGCCTCCACCTTACTCGtctcaccatcaccaccagcagcaccaccaccagcagcagcagcagcagcagcagcagccagtGCAGCAGCAGCAAGGGATGATGCAGGAGGTAGCCTTTTCTAGTTCTTTCTATGGGCCGAGCCAGCCGGCGCCGGGTGGCCCGTGCCTTGTCGCCGACGTCGGCGGTAACCCTGACGCTGGCAGCCACATCCCCTCATACACATCTTCATTTGTGTTCACCTACCCAGAGGGAGCCTGCGGCGCCAGCGCTAACCAGCGaaccagcagcagcgagcagtCCTCTGACTCCATGAACTCGCCCTCACTTCTCGCACTCTGAATGCCCTGACCCCTTCCTTCCTATCATTGCCctttttcatacacacacagacacacacacacatgcaatcatTCACTTTATCATGTGCAGCACAGTAGATGTGCTCAGCCTCTTTGACATTTTTCAAGAAGACCCTTTGTTATTGCATATTCACATCTTAGAGTTatatttattgcaaaaaaaaagtacaaaagttcTCACCGTTTCATTTGTTCcagctaaatgtttttttgcactGGTGCTTTAGTTGCTTAACTCAAGCCTGAATCACTATCAGATAAAGTATTAATTTGTAATAGATTCAAACATAGTATCAAAAAGAGTCAGCACCTGTGACATCCccccccacacactcacacatgttAAAATGACACCTGGTAATGCACTTAGTTATATTTATCTCTCCTCCTGCttggtctctttctttctctctctctcgttgcTCCTGCTTACTGCTGGTGTTTgagctctctttttctctccatgcTGATCCTCTGCACAGTGTATTTGTCTGAGTTGAAAAGGGGGCAAACACCTTCTGTGGCttcaatattttagttttttcatAGGCCAAACTGTAATCCACCCACTTCTGCACTCTTCATCCTCCATCTaatccttcctttccttctctgtcATTGTGCCGGGACTTTTAAACAATAAGGGACGTCATTTCCCTctacaatcaatcaatcaatcagtcagtcaatcagtcagtcaaaTCACTATCTATCTCTTTTTCTTGTCTCCTGCATCGTCCATCTGCCCATCTGTTTCTCCTCTCTTCTGTCTCTATGTGCCTCTGGTACTCTGTGAAGCCTTCAGCCCCTGAGAGCCCATTGGACCCTGAAAGCCCATGGAACCTTGAATGATGGCCGGGCCACCCCAGCACCACAGACAGCCCCCCTTTTCCCCTCCAGCATGGACCGACAGCCACACTGCACAGAGGAAAcgcaggatttaaaaaaaaa
>XM_026914377.2
GATGGCTTCATTCAGAAGACGAGGGACGCCGGCTCGCGCGCACAAAACGCTGTTTATTATCGCTGACCAAACACGCTGCGGACATTTTTTTCATGGATTTATAAATGCACACTTCGAAAAAAAGGGAATCTTTTAGGGATTGTGATCTCGCCAGCCAGGGTGGACGTCTCCGCTTTGGAGTTGTAAACTTGTTTCCCCCCAACGCAGAACTGGATTGCCATCTTAATGCAACTTTTTTGGAAAGACACGAAAGGCATCTTGACTGACTCTTCAAGTAAATCTTGTTACGGTGACGTGCCATTTTCGCCGGGAGCGAGCGCTTTCTCGGTTCCACTCGGCTCTGCCGGGGAGATGTTCCAGGGGTTTCCCGGTGACCCGGACAGCGGCTCCCGTGGAAGTTCCTCTCCGTCGGTCGAATCTCAGTACCTGTCTTCGGTGGACTCCTTCGGGAGCCCCTCCACCACCACTGCACCACAAGAGTGTGTATCTGCCGCTGGAGGTGTAGGGGTGGGTGGCGGGTCAGCTGGCAGCGCTCCAGGGGTGGACATGCCTGGCTCCTTCGTTCCCACAGTGACTGCCATCACCACAAGTCAGGACCTGCAGTGGATGGTGCAACCCACCCTCATCTCCTCTGTGGCTCCAGGGCAGAGTGGCACAGGTACGACCACCATGACCCAGTCGGTGGCCCTGGACCCATACGACATGCCAGGGCCAAGCTTCTCCTCCGGCTCGGGCTTCACTCCTCCCAGCTCGGACACCCCAGGTCCCTTGCGCCAGTCAAGGAGCCGCCGGCGCACGCGTGACGAAACGCTGACtccagaggaggaagagaagaggcgcgtcaggagagagagaaacaaactgGCCGCTGCCAAGTGTCGCAATCGACGGCGTGAGCTTACAGACAGGCTACAGTCGGAAACCGATAtgctggaggaggagaaggcCGAGCTGGAGGCTGAGATCTCAGAgctgcagaaggagaaggagcgTCTGGAGTTTGTCCTCATCACCCATCAGCCGAGCTGCAAGATCCCTTAccaggaggagcagcagcagacGCCGGCTCCTCCTCCGCCTCCATCCTCCTCTGTGGCAGTGGTGGGTTTGACTGTGAAGGAGGATGCGTTCTACCTGCCTCCACCTTACTCGtctcaccatcaccaccagcagcaccaccaccagcagcagcagcagcagcagcagcagccagtGCAGCAGCAGCAAGGGATGATGCAGGAGGTAGCCTTTTCTAGTTCTTTCTATGGGCCGAGCCAGCCGGCGCCGGGTGGCCCGTGCCTTGTCGCCGACGTCGGCGGTAACCCTGACGCTGGCAGCCACATCCCCTCATACACATCTTCATTTGTGTTCACCTACCCAGAGGGAGCCTGCGGCGCCAGCGCTAACCAGCGaaccagcagcagcgagcagtCCTCTGACTCCATGAACTCGCCCTCACTTCTCGCACTCTGAATGCCCTGACCCCTTCCTTCCTATCATTGCCctttttcatacacacacagacacacacacacatgcaatcatTCACTTTATCATGTGCAGCACAGTAGATGTGCTCAGCCTCTTTGACATTTTTCAAGAAGACCCTTTGTTATTGCATATTCACATCTTAGAGTTatatttattgcaaaaaaaaagtacaaaagttcTCACCGTTTCATTTGTTCcagctaaatgtttttttgcactGGTGCTTTAGTTGCTTAACTCAAGCCTGAATCACTATCAGATAAAGTATTAATTTGTAATAGATTCAAACATAGTATCAAAAAGAGTCAGCACCTGTGACATCCccccccacacactcacacatgttAAAATGACACCTGGTAATGCACTTAGTTATATTTATCTCTCCTCCTGCttggtctctttctttctctctctctcgttgcTCCTGCTTACTGCTGGTGTTTgagctctctttttctctccatgcTGATCCTCTGCACAGTGTATTTGTCTGAGTTGAAAAGGGGGCAAACACCTTCTGTGGCttcaatattttagttttttcatAGGCCAAACTGTAATCCACCCACTTCTGCACTCTTCATCCTCCATCTaatccttcctttccttctctgtcATTGTGCCGGGACTTTTAAACAATAAGGGACGTCATTTCCCTctacaatcaatcaatcaatcagtcagtcaatcagtcagtcaaaTCACTATCTATCTCTTTTTCTTGTCTCCTGCATCGTCCATCTGCCCATCTGTTTCTCCTCTCTTCTGTCTCTATGTGCCTCTGGTACTCTGTGAAGCCTTCAGCCCCTGAGAGCCCATTGGACCCTGAAAGCCCATGGAACCTTGAATGATGGCCGGGCCACCCCAGCACCACAGACAGCCCCCCTTTTCCCCTCCAGCATGGACCGACAGCCACACTGCACAGAGGAAAcgcaggatttaaaaaaaaa
>XM_026914380.2
AGATGGCTTCATTCAGAAGACGAGGGACGCCGGCTCGCGCGCACAAAACGCTGTTTATTATCGCTGACCAAACACGCTGCGGACATTTTTTTCATGGATTTATAAATGCACACTTCGAAAAAAAGGGAATCTTTTAGGGATTGTGATCTCGCCAGCCAGGGTGGACGTCTCCGCTTTGGAGTTGTAAACTTGTTTCCCCCCAACGCAGAACTGGATTGCCATCTTAATGCAACTTTTTTGGAAAGACACGAAAGGCATCTTGACTGACTCTTCAAGTAAATCTTGTTACGGTGACGTGCCATTTTCGCCGGGAGCGAGCGCTTTCTCGGTTCCACTCGGCTCTGCCGGGGAGATGTTCCAGGGGTTTCCCGGTGACCCGGACAGCGGCTCCCGTGGAAGTTCCTCTCCGTCGGTCGAATCTCAGTACCTGTCTTCGGTGGACTCCTTCGGGAGCCCCTCCACCACCACTGCACCACAAGAGTGTGTATCTGCCGCTGGAGGTGTAGGGGTGGGTGGCGGGTCAGCTGGCAGCGCTCCAGGGGTGGACATGCCTGGCTCCTTCGTTCCCACAGTGACTGCCATCACCACAAGTCAGGACCTGCAGTGGATGGTGCAACCCACCCTCATCTCCTCTGTGGCTCCAGGGCAGAGTGGCACAGGTACGACCACCATGACCCAGTCGGTGGCCCTGGACCCATACGACATGCCAGGGCCAAGCTTCTCCTCCGGCTCGGGCTTCACTCCTCCCAGCTCGGACACCCCAGGTCCCTTGCGCCAGTCAAGGAGCCGCCGGCGCACGCGTGACGAAACGCTGACtccagaggaggaagagaagaggcgcgtcaggagagagagaaacaaactgGCCGCTGCCAAGTGTCGCAATCGACGGCGTGAGCTTACAGACAGGCTACAGTCGGAAACCGATAtgctggaggaggagaaggcCGAGCTGGAGGCTGAGATCTCAGAgctgcagaaggagaaggagcgTCTGGAGTTTGTCCTCATCACCCATCAGCCGAGCTGCAAGATCCCTTAccaggaggagcagcagcagacGCCGGCTCCTCCTCCGCCTCCATCCTCCTCTGTGGCAGTGGTGGGTTTGACTGTGAAGGAGGATGCGTTCTACCTGCCTCCACCTTACTCGtctcaccatcaccaccagcagcaccaccaccagcagcagcagcagcagcagcagcagccagtGCAGCAGCAGCAAGGGATGATGCAGGAGAGGGAGCCTGCGGCGCCAGCGCTAACCAGCGaaccagcagcagcgagcagtCCTCTGACTCCATGA

Function

symbol description
fosb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOSB (FosB proto-oncogene, AP-1 transcription factor subunit).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914376.2 True 2483 mRNA 0.53 5 24680767 24686249
XM_026914377.2 False 2444 mRNA 0.52 5 24680767 24686249
XM_026914380.2 False 1309 mRNA 0.59 6 24681764 24686250

Neighbor

gene id symbol gene type direction distance location
c6h19orf47 c4h19orf47 coding downstream 5911 24667061 ~ 24674856 (-)
qpctla LOC108264841,LOC108433456,LOC107560141,LOC107662147 coding downstream 202795 24469967 ~ 24477972 (-)
tbcb tbcb,LOC107687357,LOC107662130,LOC107560142 coding downstream 239153 24436290 ~ 24441614 (-)
tmem123 NA coding downstream 247500 24427587 ~ 24433267 (-)
arfgap2 arfgap2 coding downstream 313508 24349599 ~ 24367259 (-)
capn12 LOC108264620,LOC108433431 coding upstream 18754 24705004 ~ 24727022 (-)
znf296 LOC108264426 coding upstream 52841 24739091 ~ 24750597 (-)
siae siae coding upstream 81325 24767575 ~ 24776782 (-)
bckdha bckdha,LOC107560150,LOC107758241,LOC107662140 coding upstream 338567 25024817 ~ 25034882 (-)
ppp1r13l ppp1r13l coding upstream 420179 25106429 ~ 25135256 (-)
G104320 NA non-coding downstream 146348 24533737 ~ 24534419 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding downstream 216189 24414900 ~ 24464578 (-)
G103820 NA non-coding downstream 1105088 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 1167439 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 1350666 23329676 ~ 23330101 (-)
G104694 hnrnpul1 non-coding upstream 427727 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 505807 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 552860 25239110 ~ 25241770 (-)
G104750 NA non-coding upstream 557222 25243472 ~ 25245244 (-)
G105092 NA non-coding upstream 1147029 25833279 ~ 25836038 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 18789 24631639 ~ 24661978 (-)
sipa1l3 sipa1l3 other downstream 106092 24480302 ~ 24574675 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other downstream 941988 23732870 ~ 23738779 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other downstream 981060 23648684 ~ 23699707 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other downstream 1070319 23590945 ~ 23610448 (-)
clasrp clasrp,LOC107758246,LOC107662138 other upstream 65403 24751653 ~ 24764161 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other upstream 357536 25043786 ~ 25079512 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other upstream 699075 25385325 ~ 25548928 (-)
G105376 NA other upstream 1553080 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 1882835 26569085 ~ 26608339 (-)

Expression


Co-expression Network