tat (tat,LOC106573680)


Basic Information

Item Value
gene id tat
gene name tat,LOC106573680
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9193351 ~ 9201817 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926992.2
TCTGTGGCGGCTGTCTATAAAACCGGCCACAATACTACACAACACATTTCAGTGCATAATTTATTCGTGTTCCTGTAGGGACAAGTTTTTTTAAGGATTCTTTTGAGGCACCTTTGAAAGagaaAATGTCACGTGTCGGGAAAATGAATGGAGTCTCACTGAACGGTTTTCACGGAGATGAGAAGTTCAAAGGCCACGGAATGAAGAACGGTGACAGTGTGAACGGAATGAACGGAAATGGTGTCACTGTTGTGAACGGGAGCGCGCGCGCTCCGTTCAGCCCCGTTAAAGGGAGAGCGCGCGGGCAGCGCTGGAGCGTGCGAGCGTCGGAGATGGCGAAGAACACACTCAATCCTATCCGCGCTATAGTCGACGGCATGAAGCTCACCCCGAACCCTGACAAGCCCATGATCGCCCTGTCCATCGGTGACCCTACAGTATTCGGAAACTTGCCTACAGATGAAAGTGTGCTACAGGCTGTGAAGAAAGCTGTAGATTCACACAAATACAGTGGCTATGCCCCTTCAGTAGGTTACCATAAGAGCAGAGAGGCTGTGGCAAACTTCTACAGCCAGTCAAGTGCTCCACTGGAAGCTAATGATGTAATTCTGACCAGTGGATGTAGCCAGGCTATCGAGTTGGCCATCAGTGTACTGTGTAATCCAGGAGACAACATCCTAGTTCCTTGCCCTGGATTCTCGCTCTACAAAACCCTGGCTGTGTCGATGGGCATCCAGGTCAAACTGTACAACCTACTGCCGGAGAAGTCCTGGGAGATTGATCTCCAACACTTGGAGAGTCTGATTGATGAGAGGACAACCTGTCTGATTGTCAACAACCCGTCCAACCCCTGTGGCTCTGTATTTACAAAAGGGCACCTGCAGAACATCCTCTCAGTTGCCTCAAAACACTGTGTCCCTATCCTGGCAGATGAGATCTATGGAGACATGGTCTTTCCCAACTGTGAGTTTCATGCCCTGGCTCCTCTCAGCAGTGACGTACCCATTCTGTCCTGTGGTGGTCTGGCTAAACGCTGGCTTGTTCCTGGATGGAGACTGGGCTGGATCCTCATCCACGATCGCAATAATATCTTCGGACGAGAGATTCGAGAAGGTCTTGTGAAGCTCAGTCAGCGCATTTTGGGAGCTTGTACAGTTATCCAGGGGGCGCTAGAAAGCATCTTTAAAAATACCCCCTCAGAGTTCTACCAAAGTACAATCAACTTTCTAAAGTCAAATGCAGATATTTGCTTCTCAGAGCTGTCCACTGTTCCTGGGCTCAATCCGGTAATGCCATCTGGAGCCATGTACCTCATgGTTGGAATTGAAATGGAGCACTTTCCAGAGTTCCAGGATGATGTGGAGTTCACAGAGAGGCTAGTTACTGAACAGTCTGTGTTCTGCTTACCTGCCACGGCATTTGAATACCCAAATTTCTTCCGGATTGTGGTGACGGTTCCAGAGGAAATGATGGTGGAAGCATGTGAACGGATCAGGGAATTCTGTGCACGCCACTACAGACCTCGCAGCCAAGACAGCAACGACCTGGACCAGTGAAGGGATGTTCGGTGAACAAgctagagagaaagagcaaacaATAAAGGGACACACGAAAGTGTATATGTAGTAGACAGGGAGATCCACTTCTAACGGTTTGAGTGAGGACTGATGTTTGTTCTTTGAAGGAGATAAAATATTTCTATGCACTAGTGATGACAGATATATGATATGGTCATGATAGGgaaggctaaaatctaatatctatcaatcgCTCAACAATGAACTATTAGGGCTGAgaaatgcattatatcacaaggtctgTATTAcaagatcacacacacagacacttaaaggcagatagGCATTTCTATTATTcctaattattcatttttaacaccCTACTTTGAATACCAAACATAATGGTAAACAGACAGTATGGTtttgtcatctgtccttttgtgtaatttgtacacTGATTGGACATCGTGGGCATAGTCTATCTAGTTTTAGAGTCTCCTGTGAAAGGCATACCATCAGAAAGACGATAGACcaaataatccacctcattcGCATTCATTACACCCACAACTGTatttctcaatcactgctgatgacataTTACAGATGTGTCAGTAGCACAGGCTggaaaatatcagcccaaattcACACTAGAAGAGGTTTCACTCTGAGTAATCACCTGACACttctgtcactgataggctacatgaatctacagtctgggctggaAATAAATCAGCCCCAGTGTCACCTTTTCATGTCGTTCTGTACTAATCGGTGATACTGTTGATCATGTTTTCACAAATGTCCAAAAATAATCTgccttaaaacatttgttaacagaaaacaatctgatgtggatgccaaaaatgactcattttattaatgtctttttaatcATTGAAAGACAGGGATGAGCTTAGCCCTGCTACCCCATTTATATTATGTAAGCTATGCATctattctatgttttttttatatggacCAGTAAACTGTCTTATGTAAATCTCGTGCTTATCACTTGTACACTGTAGTGATttcttttgtgtatgtgtatgattgATCTACTTCCAT
>XM_026926993.2
TCTGTGGCGGCTGTCTATAAAACCGGCCACAATACTACACAACACATTTCAGTGCATAATTTATTCGTGTTCCTGTAGGGACAAGTTTTTTTAAGGATTCTTTTGAGGCACCTTTGAAAGtttgtttttcagagaaAATGTCACGTGTCGGGAAAATGAATGGAGTCTCACTGAACGGTTTTCACGGAGATGAGAAGTTCAAAGGCCACGGAATGAAGAACGGTGACAGTGTGAACGGAATGAACGGAAATGGTGTCACTGTTGTGAACGGGAGCGCGCGCGCTCCGTTCAGCCCCGTTAAAGGGAGAGCGCGCGGGCAGCGCTGGAGCGTGCGAGCGTCGGAGATGGCGAAGAACACACTCAATCCTATCCGCGCTATAGTCGACGGCATGAAGCTCACCCCGAACCCTGACAAGCCCATGATCGCCCTGTCCATCGGTGACCCTACAGTATTCGGAAACTTGCCTACAGATGAAAGTGTGCTACAGGCTGTGAAGAAAGCTGTAGATTCACACAAATACAGTGGCTATGCCCCTTCAGTAGGTTACCATAAGAGCAGAGAGGCTGTGGCAAACTTCTACAGCCAGTCAAGTGCTCCACTGGAAGCTAATGATGTAATTCTGACCAGTGGATGTAGCCAGGCTATCGAGTTGGCCATCAGTGTACTGTGTAATCCAGGAGACAACATCCTAGTTCCTTGCCCTGGATTCTCGCTCTACAAAACCCTGGCTGTGTCGATGGGCATCCAGGTCAAACTGTACAACCTACTGCCGGAGAAGTCCTGGGAGATTGATCTCCAACACTTGGAGAGTCTGATTGATGAGAGGACAACCTGTCTGATTGTCAACAACCCGTCCAACCCCTGTGGCTCTGTATTTACAAAAGGGCACCTGCAGAACATCCTCTCAGTTGCCTCAAAACACTGTGTCCCTATCCTGGCAGATGAGATCTATGGAGACATGGTCTTTCCCAACTGTGAGTTTCATGCCCTGGCTCCTCTCAGCAGTGACGTACCCATTCTGTCCTGTGGTGGTCTGGCTAAACGCTGGCTTGTTCCTGGATGGAGACTGGGCTGGATCCTCATCCACGATCGCAATAATATCTTCGGACGAGAGATTCGAGAAGGTCTTGTGAAGCTCAGTCAGCGCATTTTGGGAGCTTGTACAGTTATCCAGGGGGCGCTAGAAAGCATCTTTAAAAATACCCCCTCAGAGTTCTACCAAAGTACAATCAACTTTCTAAAGTCAAATGCAGATATTTGCTTCTCAGAGCTGTCCACTGTTCCTGGGCTCAATCCGGTAATGCCATCTGGAGCCATGTACCTCATgGTTGGAATTGAAATGGAGCACTTTCCAGAGTTCCAGGATGATGTGGAGTTCACAGAGAGGCTAGTTACTGAACAGTCTGTGTTCTGCTTACCTGCCACGGCATTTGAATACCCAAATTTCTTCCGGATTGTGGTGACGGTTCCAGAGGAAATGATGGTGGAAGCATGTGAACGGATCAGGGAATTCTGTGCACGCCACTACAGACCTCGCAGCCAAGACAGCAACGACCTGGACCAGTGAAGGGATGTTCGGTGAACAAgctagagagaaagagcaaacaATAAAGGGACACACGAAAGTGTATATGTAGTAGACAGGGAGATCCACTTCTAACGGTTTGAGTGAGGACTGATGTTTGTTCTTTGAAGGAGATAAAATATTTCTATGCACTAGTGATGACAGATATATGATATGGTCATGATAGGgaaggctaaaatctaatatctatcaatcgCTCAACAATGAACTATTAGGGCTGAgaaatgcattatatcacaaggtctgTATTAcaagatcacacacacagacacttaaaggcagatagGCATTTCTATTATTcctaattattcatttttaacaccCTACTTTGAATACCAAACATAATGGTAAACAGACAGTATGGTtttgtcatctgtccttttgtgtaatttgtacacTGATTGGACATCGTGGGCATAGTCTATCTAGTTTTAGAGTCTCCTGTGAAAGGCATACCATCAGAAAGACGATAGACcaaataatccacctcattcGCATTCATTACACCCACAACTGTatttctcaatcactgctgatgacataTTACAGATGTGTCAGTAGCACAGGCTggaaaatatcagcccaaattcACACTAGAAGAGGTTTCACTCTGAGTAATCACCTGACACttctgtcactgataggctacatgaatctacagtctgggctggaAATAAATCAGCCCCAGTGTCACCTTTTCATGTCGTTCTGTACTAATCGGTGATACTGTTGATCATGTTTTCACAAATGTCCAAAAATAATCTgccttaaaacatttgttaacagaaaacaatctgatgtggatgccaaaaatgactcattttattaatgtctttttaatcATTGAAAGACAGGGATGAGCTTAGCCCTGCTACCCCATTTATATTATGTAAGCTATGCATctattctatgttttttttatatggacCAGTAAACTGTCTTATGTAAATCTCGTGCTTATCACTTGTACACTGTAGTGATttcttttgtgtatgtgtatgattgATCTACTTCCAT

Function

symbol description
tat Predicted to enable L-tyrosine:2-oxoglutarate aminotransferase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within L-phenylalanine catabolic process; biosynthetic process; and tyrosine catabolic process. Is expressed in liver. Human ortholog(s) of this gene implicated in tyrosinemia and tyrosinemia type II. Orthologous to human TAT (tyrosine aminotransferase).

NR:

description
uncharacterized protein LOC110518121 isoform X1

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004838 L-tyrosine molecular_function

KEGG:

id description
K00815 TAT; tyrosine aminotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926992.2 False 2591 mRNA 0.45 12 9193351 9201817
XM_026926993.2 True 2603 mRNA 0.44 12 9193351 9201817

Neighbor

gene id symbol gene type direction distance location
zgc:56622 LOC108264227,LOC108411019 coding downstream 2279 9186380 ~ 9191072 (-)
meak7 tldc1,LOC104945682 coding downstream 25077 9162522 ~ 9168274 (-)
plcg2 plcg2 coding downstream 31521 9134196 ~ 9161830 (-)
tmem243a LOC108264233 coding downstream 110742 9080039 ~ 9082609 (-)
si:ch211-233h19.2 LOC108264231,LOC108444275 coding downstream 117392 9049269 ~ 9075959 (-)
LOC113534306 LOC108264223 coding upstream 3528 9205345 ~ 9210930 (-)
LOC113534316 LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720 coding upstream 15427 9217244 ~ 9220204 (-)
tbxas1 tbxas1 coding upstream 148074 9349891 ~ 9414387 (-)
fgd4a fgd4 coding upstream 423246 9625063 ~ 9692085 (-)
bicd1a bicd1,LOC107722484 coding upstream 492260 9694077 ~ 9732778 (-)
G96421 NA non-coding downstream 106680 9084327 ~ 9086671 (-)
G96220 NA non-coding downstream 430755 8754558 ~ 8762596 (-)
G96170 NA non-coding downstream 563228 8629900 ~ 8630123 (-)
G96166 NA non-coding downstream 580337 8612815 ~ 8613014 (-)
LOC113534629 NA non-coding downstream 848693 8326831 ~ 8344658 (-)
G96484 NA non-coding upstream 124864 9326681 ~ 9338784 (-)
G96679 NA non-coding upstream 215205 9417022 ~ 9417414 (-)
G96677 hipk2 non-coding upstream 215769 9417586 ~ 9503941 (-)
G96840 NA non-coding upstream 617570 9819387 ~ 9884455 (-)
G97054 NA non-coding upstream 869736 10071553 ~ 10095358 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 715014 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 1498924 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 2035863 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 2911821 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 3406920 5713843 ~ 5786431 (-)
LOC113534661 NA other upstream 549065 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 620416 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 1065161 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 1325293 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 1970870 11172687 ~ 11179608 (-)

Expression


Co-expression Network