sema3e (sema3e,LOC107563409,LOC107559846)


Basic Information

Item Value
gene id sema3e
gene name sema3e,LOC107563409,LOC107559846
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 8702731 ~ 8742563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927063.2
gagagagagagggcttgGCAAGAGTCCATGTTAGCAGCAGGGGAGTGGAGCAGTCAGTAGGGGAGGATCACTGAGTGGCACGTGGAGAGGCAGTATTTCACTGAGCTGGAAGAGATACAGAGCTgcggaggaggagagagaaagagagagagaaggtggagGCAAAAGACAAGCCTTCTTCTCCTTAGTAAGACAAGTGAGCAGTACACCTCGAGCGCTCCAAAATCAGCACAGCCCttgactgacacacactcgtGCGTACACACCCACAGCCAGCACGTTTGAGGTTGTGGAATGCGCCTGCTGTGGTGGAGACTGACAGGGCAAACAGCCAGCGTTGAGTCACAGCACTGCGCTTTCTATAGAAGAACACCGGCTGCGCCCTGGAAACACATACAGAAAGCTTTGCACATTCACCCCTGATTGCTACGGACATAACACAGATACCTCCACACCCAAGGATTAatgagtgatgcagcagtgacTGCATGCAAACCGGAACCGGGGCTGTCATCTCTGCGCTGGATGATGGATGCTCCTTGTCCTGGATGGTAGGCACTGAGGGACATTTCAACAGGATAGTGTatacagcgtgtgtgtgagtgtcaggATGGCGGCAGGATGGATCTGGACCCTTGTACTTTGTGTGTCACTGTGGAAAGAGTCTTCTGTACATGGAGCAAAGAACAACTATCCGAGATTACGACTGTCCCATAAAGAGCTGTGGGAATTGAACAGGACGTGGGTGTTCCAAGCGGCTGAAGGGAGTCTGCAGCACTACAGTATGCTGCTGGATGAGACTCAGGAGAGGCTGATAATTGGAGGGAAAGACACACTGTACTCTCTTAACCTGGACAGAGTCAGTGAGCCTCACAGagagATTCACTGGGCTAGCTCTGAGGAGCAGGTGCAGGACTGTCTCATGCAGGGCAGAGAGAAGCCGGAGTGTGCTAACTACATCAAGCTGATCCAGCCGTATAACAGCACTCACCTGCTAGCATGCGGGACTGGAGCCTTCAGCCCGATGTGTGCCTACATCAGAGTCAGCCATGGAGCAGAGgAAGGAGTGTTTCAGCTGGAGTCAGAGCACATTGAGAGTGGCAGAGGGAGATCCCCGTTTCATCCCAACAGCCCAACAACGTCCACGGTGTCCAGAGATCAGCTCTTTGTAGGGCTATACACTGATTACTGGGAGAACGATGCGGCACTGTATCGCCTTGGCAGTCACAGCTACACCAGGACGGAAGTAGGAGACAGACAGCAGCTAAATGAGCCCAAGTTTGTTGGTTCTGTGGTGATCCCTGATAACGATGACCCTGCTGATGACAAAGTTTACTTCTTCTTCACTGAGAAAGTGTCCACCACAGAGGCAGGAAATAAAGCTGTCTACAGCAGGGTGGCCCGTGTATGTGCTAATGATCAGGGTGGTCAGAGGATGTTGGTGAATAAGTGGAGCTCTTTCCTCAAGGCTCGTTTGATATGCTCAGTGGCAGGACCCAATGGCATCGACACCCACTTTGATGAGCTGGAGGACATCTTTGTGCTGAAGAGGAAGAATGAGAAGAATCCTGAGATCTTTGGTCTATTCAGCACTACCAGTGCGGTGTTTAAAGgttatgcagtgtgtgagtataACATGGAGGAGATCCGAGCTGCCTTTAATGGTCCGTTTGCACATCGAGAGCAAACTGACCACCACTGGGGTGTGTATGAAGGGAAGGTCCCATACCCTCGCCCTGGATCTTGTGCCAGTAAGATTAATGGAGGTCAGTTCTCCAGTTCTAAGGGGTATCCAGATGAGGTTCTGCGTTTCATCCGTTCCCATCCCCTCATGTTCCAGCCAGTGCAGCCGGTCCACAGGAGGCCCATCCTGCTGGACACAGATGGTGGACGCAGGCTCACCGAGATCGCTGTAGACCGAGTGGAGGCTGAGGATGGACATTATAATGTCCTGTTCATTGGGACAGATGATTCAGTCGTGTTAAAATTGATCACCATTTTCAACAAAGAGGCCAACACAATTGAAGAAGTGCTTCTGGAGGAGCTACAAGTGTTCAAGgtTCCAGTGCCCATTACAGAAATTATCATCTCAAATAAAAGGCAACATCTGTACGTGGGCTCAGAGTTGGGAGTGACGCAGGTTCAAGTGCACCAGTGTGGCCTGTATGGCTCAGCCTGCGCCGACTGCTGCCTAGCCAGAGACCCATACTGTGCCTGGGATGGACACACCTGCTCCAGATACATACCTGCtggcatttacacacacaagagGCGATTCAGAAGGCAGGATGTCCGTCATGGCAATGCGGTGCAGCAGTGTAATGGTCTCCAGCTGAATGaggcTCAGAGCATATCAGAGAAATTAGTGTATGGAGTGGAAAAGAACAGCACTCTGTTAGAGTGTAGAGCTCGATCCCTACAGGCTGTACTCACATGGTACATGGTGAAAGGAGTAGACTTGGAAGAGATAAAAGGCGATGATCACATTATTCAGACGCCTCATGGCTTGTTGTTTCTGATAACAAAGAAGTCTGACAGTGGTGTGTACCTGTGCCAGTCTGTGGAGCACGGCTTTGTCCAGACCATAGCCAGGGTGACTCTGGAGGTGTTGGAAGAGGACACACTGGAGAGTCTGTTCCACAGAAGGGACTATGACGAGAGCGAGCCCCATCTCCGTTCTCCCCCCTGCCCCTTTCCAAGCCGCCCATCTGCCCCTTCCTCCAGAAAGCTCTGGTATAAAGACTTCATGCagctgattggttacagtaaCTTCCAGCGGGTGGAGCAGTATTGTGAGAGGGTGTGGTGCGCATCcgaaaagaagaggaagaagctcAAAGGCACGCCGTCCAAGTGGCAGTATTCCCATGGGGGTGAGCGGCGTGGGAAAGCTCGGGCACCCAGACACACACGGGACTAGTGAAGAGCCCGATATACCCTGAACTGAACAGACAGACCACGGGGTTGCGTTCACACATCCAGATAATATTCAGACTTATTTTTGCCCATTATTGTGTAAGATTAAATTGAAAATTAAGCCAAATTATGTTTGAGTTTTAGTAGTGTGACCTAGGGATGCTTCTCCAGACGCAATTGGATCCTTTTGTGCTATTCATTGTCAAGGAATTTTcccacctaaaaaaaaaacaaaaaaaaaaccttaatgtgtgtgtctggagaTCTGGTCCTTGGTGTTTGGTTTGGAATGTACTAAATGATAGAAGGTGTAGaattaatgtatatatgtaactGTGCTTGGTGGTAAAGCTCATTTTGAACATTACAGTCATAAGCTGATAGTGAATTTACAGATACAGGAACTTGTTTAGGTGAGTCTCCTAAAATGAAACACAGTGACCCCACTGTTTCctgtcacacactgacaaacaTGGGCTTGCAGTGCTTCCATTTACAATGGCGTGTGCTCTCATGTGAGAAGCAACAGAATAACTTTTCCTTGGTTGACAGCCAAAAATTTGGATTCAACAACGATTTCTTCCTCCTGAATAGGATGACTCATTACTCTGAAAATAGTTAACACTGTTCATTCTCAGATTCTCTGCGCACAAAGACAGGCAACGTTTTCTGCACATACTTTACGTATTTATCacttgtattttatattaaattattgtagTTGGTGTTTGGTAGTGGTTTAGATGTCCCCATTAGTTTGAACTGGAGATATGTTACTGCTTGTGTTTAGTGCTTATAGGTTTTTAGATCACTGATGTGTAATTACCATTTTTAAAGGCCCATTTACACAACATTAAGAACACAGTGTTCATGAACAACATGAATGACCCATTGAACTCAAAGACTGTTTCCAGCATCATGAATCATGTTAGGATTCTATacttatgtaaatgtaatgtattgtatAAAATGGAGTGAATACCAACATAGAAGTCCTTCTTATTTTCATGTAGGCTACTCAAATAAATGCCATAAACCATTGCGACATGCAACTTGTTATACAAAA

Function

symbol description
sema3e Enables neuropilin binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; endoderm; mandibular arch skeleton; and primary motor neurons. Human ortholog(s) of this gene implicated in CHARGE syndrome. Orthologous to human SEMA3E (semaphorin 3E).

NR:

description
semaphorin-3E-like

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927063.2 True 3982 mRNA 0.48 17 8702731 8742563

Neighbor

gene id symbol gene type direction distance location
pclob LOC108264083,LOC107738431 coding downstream 15090 8608017 ~ 8687641 (-)
LOC113534270 cacna2d1,LOC107672590,LOC107738419 coding downstream 108458 8492989 ~ 8594273 (-)
lepa LOC100304688,LOC108442790 coding downstream 589638 8087436 ~ 8113093 (-)
prrt4 prrt4 coding downstream 641758 8045427 ~ 8060973 (-)
frmd4a frmd4a,si:ch211-220f12.1,LOC107559478 coding downstream 725814 7847835 ~ 7976917 (-)
sema3ab sema3a,sema3ab,LOC108264812,LOC107665547,LOC107672583 coding upstream 35429 8777992 ~ 8841060 (-)
sema3d sema3d,LOC107563415 coding upstream 143665 8886228 ~ 8925270 (-)
si:ch211-233h19.2 LOC108264231,LOC108444275 coding upstream 306706 9049269 ~ 9075959 (-)
tmem243a LOC108264233 coding upstream 337476 9080039 ~ 9082609 (-)
plcg2 plcg2 coding upstream 391633 9134196 ~ 9161830 (-)
G96170 NA non-coding downstream 72608 8629900 ~ 8630123 (-)
G96166 NA non-coding downstream 89717 8612815 ~ 8613014 (-)
LOC113534629 NA non-coding downstream 358073 8326831 ~ 8344658 (-)
G95907 NA non-coding downstream 619159 8080216 ~ 8083572 (-)
LOC117597532 NA non-coding downstream 686110 8014155 ~ 8016621 (-)
G96220 NA non-coding upstream 11995 8754558 ~ 8762596 (-)
G96421 NA non-coding upstream 341764 9084327 ~ 9086671 (-)
G96484 NA non-coding upstream 584118 9326681 ~ 9338784 (-)
G96679 NA non-coding upstream 674459 9417022 ~ 9417414 (-)
G96677 hipk2 non-coding upstream 675023 9417586 ~ 9503941 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 224394 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 1008304 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 1545243 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 2421201 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 2916300 5713843 ~ 5786431 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 432092 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 1008319 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 1079670 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 1524415 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 1784547 10527110 ~ 10581902 (-)

Expression


Co-expression Network