ulk3 (ulk3,LOC107665498,LOC107681021)


Basic Information

Item Value
gene id ulk3
gene name ulk3,LOC107665498,LOC107681021
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5354621 ~ 5372127 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927159.2
TAAAATGAgcttatttgttgtttatttttcgACAATACCCAATCTCGCCTCTAGGTGTCAGTATTGTGTGTTTTGATCCATTTGGCTTTCACGTCATTTTTAACTGACAGTAAACATGCAAGGAAAGCAAACACTGGACAGGAGTTATTCATAGAGCCGCTGCGGCTACACAAATTTAGCTAAGGAAGTGTTTGATGTCACGCGCAGGGGTAACATGGCCTCGAGCTTTGCCCCGCCGAGGCTCGCGGACTTTCTGCTCACAGAGAAGCTGGGCAGTGGCACCTACGCCACGGTTTACAAAGCCTACAGGAAGactGATAACAGGGAAGCCGTGGCCGTGAAGGTGGTCAGCAAGAAGAGCCTGAACAAGGCGTCGATGGAGAACCTGCTGACGGAGATCGAGATCCTGAAAACCGTGCGCCATCCTCATATCGTACAGCTTAAAGACTTCCAGtgGGACAGTGAGAATATCTACCTCATTCTGGAGTGGTGCTCCGGTGGAGATCTGTCACGCTTCATCCGGAGCCGGCGGATTCTCCCCGAGCGAGTGGCACGTCTCTTCCTGCAGCAGATAGCCTGTGCGCTAAAGTTCCTCCATGAAAAGAACATCTCTCATCTGGACCTGAAGCCCCAGAACATCCTGCTGAGTGGCAACGTGCTGAAACTCGCAGatttCGGCTTCGCTCAGTACATGTCTCCGTGGGATGAGCAGAGCTCTCTGAGAGGTTCTCCTCTCTACATGGCTCCGGAGATCGTGTGCCGGCGGCAGTACGACGCCAGAGTCGACCTCTGGTCCGTAGGGGTCATCCTTTATGAGGCGTTATTTGGCCGTGCACCGTTTGCTTCTCGCTCTTATGCTGAACTGGAGGAGAAAATCCGCAGTGATAAACCCATCGAGCTGCCAGCCGGTGCCAGAGTATCCCGAGACTGTCGGGATTTGTTACTCAGGCTGCTGGAGAGAGATCCAGACTCGCGCATCTCATTTGACGAGTTCTTTCTGCACCCATTTGTGGACCTGGAACACATGGCCAGTGCTGAGAGTCTAGATAAGGcgAAAGAGCTGGTTCTGCAGGCGGTGCAGAAGGATCAGCAGGGGGAGAAGACTGCTGCTCTGTCTCTCTACTGCAGCGCACTGGAGCACTTTGTGCCTGCTATTCactATGAAACAGACAGGCAGAGGAAAGAGGCTCTGAGACAAAAGGTCAACCAGTATGTTTCTCGAGCTGAAGAACTCAAAGCTCTGGTGGCTTCAGACAACAAAATCAGCTTTGAGAAATCCCAGTCAGCCCGGGATATATTAAGGGAAATGTCCCGGGATCAGCCACGCTTACTCGCTGCACTGGATTTAGCTGCCACTGCTGTAGCGAAGGAGGCGTGTGGAATAGAGGACTATGAAACGCTGGATATGTATCAGCAGAGTTTGGGAGAGCTGCTGCTGGCTCTGGCTGCCGAGCCTCAAGGCCGCAGGAGGGAGCTGCTCCATAACGAGATTAAGAGTTTGATGAGTAGAGCTGAGTACCTTAAAAAACAGATCAAGatccgAGAAACCCAGACAGATGTCTCACTGGATAAAGATCCGGTTGCTGAATCTGTGCGAACGTCCTGTTGCCTGCAGTAGCCATGGGAAGTTTCAGACTCATTGGTCACGTCACATGACCAGATCGGTGCCATGATGGTGCACTTCGGATCCGAGGCGATCTGATCGAATCAACGTGAGACTGACTGACTCCGTCCTGAACCGTGTGACGGAAAACACAAGCTGCTGCTTCGTTACTGTGTAGAAGTGAAAGTAGTCAGTTGGAGTGATATGTATACGGATTATTTCCACATTAACGTACTgtacgtgatttttttttctcctctagTCTGGAGCATAGGGCATTCTAGATATCCTGacatctaaaaaagaaaaaacacacaaatctgCATCTGCTGTACAgaagtaaatgaatcattacaGCACTCTTTTCCATTCATGCTGTATCACTTTtctttagcacacacacacacacacacacacacaccgctcctCTCCCCTCAGTGCAGTGGGGTTCACCGCAGCTCGTCCACATAATGAGTGCGctgtgtggtggtggtgaacgTGGCTCTGGAACCATGTGGTTTCCTCCCTGTTCATTCTGCTCTTACATTTACTTTGCACTGCCACACATCGAGTTCTGTACCGTTTTCTCTGCCCGCCTCATACTCCGCCGGTTAACACTTTAGACTCGTGATGCAGCAGTAAAAAAACTGAAGTGAAGCTCTGAAACTGGGAGACAGATCGTGTAAAGCACTGGAGTGTTGTAAGGAAAATGTTGAAAGTGGTATCCGTGAGGcctttttataaatgtttttgctgTAATAATTTATTGAATGTTTGATTACAGGGGAAATAAACGAATCTTTCTGCTAA

Function

symbol description
ulk3 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in autophagosome organization; peptidyl-serine phosphorylation; and protein autophosphorylation. Predicted to act upstream of or within autophagy and protein phosphorylation. Predicted to be active in autophagosome. Orthologous to human ULK3 (unc-51 like kinase 3).

NR:

description
PREDICTED: serine/threonine-protein kinase ULK3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K21358 ULK3; serine/threonine-protein kinase ULK3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927159.2 True 2413 mRNA 0.49 17 5354621 5372127

Neighbor

gene id symbol gene type direction distance location
LOC113534806 NA coding downstream 247228 5085274 ~ 5107393 (-)
p2ry1 p2ry1,LOC102799884 coding downstream 378357 4973008 ~ 4976264 (-)
LOC113534489 rap2b coding downstream 423901 4928340 ~ 4930720 (-)
LOC113534715 arhgef26,LOC102799329 coding downstream 513587 4785197 ~ 4841034 (-)
LOC113534432 mme,LOC107548962,LOC107695447 coding downstream 677261 4642261 ~ 4677360 (-)
larp6a larp6,LOC107665376 coding upstream 37440 5409567 ~ 5414923 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 198268 5570395 ~ 5583415 (-)
lsm14ab lsm14a coding upstream 272689 5644816 ~ 5658105 (-)
LOC113534713 NA coding upstream 420094 5792221 ~ 5796056 (-)
LOC113534712 NA coding upstream 433550 5805677 ~ 5807182 (-)
G94058 NA non-coding downstream 18212 5332074 ~ 5336409 (-)
G94010 NA non-coding downstream 174820 5076140 ~ 5179801 (-)
G94045 LOC108264453 non-coding downstream 228294 5120028 ~ 5126327 (-)
G93988 NA non-coding downstream 343188 5007425 ~ 5011433 (-)
LOC117597587 NA non-coding downstream 383018 4966634 ~ 4971603 (-)
G94284 NA non-coding upstream 15975 5388102 ~ 5391848 (-)
G94325 NA non-coding upstream 188428 5560555 ~ 5562406 (-)
G94441 NA non-coding upstream 331454 5703581 ~ 5703791 (-)
LOC117597596 NA non-coding upstream 539641 5911768 ~ 5913593 (-)
G94607 NA non-coding upstream 653233 6025360 ~ 6029235 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 1134014 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 1181027 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1281088 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 1805870 3425718 ~ 3548751 (-)
G93047 NA other downstream 2586323 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 267569 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 341716 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 825116 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 1774373 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2065964 7438091 ~ 7694427 (-)

Expression


Co-expression Network