chst8 (LOC108264863,LOC108264314)


Basic Information

Item Value
gene id chst8
gene name LOC108264863,LOC108264314
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5924531 ~ 5928298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927349.2
TCAATTTCAATGGCTTGACATGGCAgatgagagagGAGCTGTGTGCCCAGCAGGACAGCAACATTACAGGCAGCATGGCTGCAGTTCCTTTGGGAAGACAACACAGACCTGATGAACCAAGTGCTGATAACTATATCTCTCCGATGCAGTTTCCGGCTTTCAGTTCTAACAAACCAAATCAAGCTTCACATCGTGTTACAAAACGCCACCGGAAGCTTCTCAAGACCAGCGCAGCAATCCGGTCACTATCCaactcctcatcatcatcagagcCTACACCCAAGAGCTGGCAGCACTTCTACCACATGCAGAAAACTCGTCATCGCCTGATCAAGGAGGTCTGTGCCAAATACCGCAGCAACATCTCGCGAACAATAACACCACACCATGTGTCTCGCATCTATGTAGAGGACAGACACAAGTTGCTTTACTGTGAAGTGCCCAAAGCAGGCTGCTCCAATTGGAAGCGAGTGCTGATGGTGCTTGCTGGTGTTGCATCCTCCACACACAAGATAAACCACGACACTGTCCACTACGCCAACCACCTAACACGACTAGACAGCTTTGACCAGCATGCAGTTTCTAAACGCCTCCGTTCCTACACCAAGGTGCTGTTCATTCGGGAGCCAATGGAGCGTCTGGTCTCAGCATACAGGGACAAATTTGAGAGCCCGAACTCATACTACCACCCTGTGTTTGGCAAGCCCATAATCTCCAAGTACAGGGTGAATGCATCCAAATCGGCACTCAGGACAGGAAGCGGTGTCACTTTTCAGGAGTTTATCCGCTACCTGCTGGATGTACACCGTCCTATTGGCATGGACATCCACTGGGAGCCAGTTAGTCAGCTCTGCAGTCCATGCCTGCTTGATTATGATTTCATCGGCAAATTTGAGACCATTGAGGAGGAGGCTAACTTCCTCTTGCATAGGGTGGGTGCTCCAAAAAACCTCACATTCCCCACTTTCAAGGACAGAAACCCAGAAGCTGCGAGGACTTCCACACACATCATGCAGCGTTACTTCACACAGCTCAGTGCCTCAGACAGGCAGAGGGTATATGACTTCTACTATATGGACTATCTAATGTTCAACTATTCCAAACCTTTTCAAGATGTGTACTGATCAACTGATAGGCACCTTTGGTTGGCATTGTCATGGTTGCTATTGTATAGGCTGTCAAAAACTAATAGATTATTACAGTGTGAAATTTACATAGTCGTAGTTCATTCTAACTGCTTCAAAATAGCAGGCGTTTTGTTAATTCACACCAATAATTTTGCAATTAACACATTCCAATTGGGATTGAAACGAGCGGGATAGACTACAAATGATACGAAATTCATTGTTATGCACTCTAAACACACTCCAGAAGTATGGAAACAGGCTCATAATCCCTTGTCATTTCATCCACTGAAAGTAACATCCACGTTCATGATAA

Function

NR:

description
PREDICTED: carbohydrate sulfotransferase 8-like

GO: NA

KEGG:

id description
K09672 CHST8; carbohydrate 4-sulfotransferase 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927349.2 True 1440 mRNA 0.46 2 5924531 5928298

Neighbor

gene id symbol gene type direction distance location
LOC117597570 NA coding downstream 115014 5807422 ~ 5809517 (-)
LOC113534712 NA coding downstream 117349 5805677 ~ 5807182 (-)
LOC113534713 NA coding downstream 128475 5792221 ~ 5796056 (-)
lsm14ab lsm14a coding downstream 266426 5644816 ~ 5658105 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 341116 5570395 ~ 5583415 (-)
LOC113534754 LOC108264847 coding upstream 103118 6031416 ~ 6042803 (-)
gramd1bb gramd1b,gramd1bb,LOC108264679,LOC107717608,LOC107670606,LOC107733299 coding upstream 120178 6048476 ~ 6171119 (-)
trnam-cau_19 NA coding upstream 265777 6194075 ~ 6194147 (-)
kirrel3b LOC108264823,LOC108434141,LOC103024239 coding upstream 548654 6476952 ~ 6680208 (-)
trnap-agg NA coding upstream 936970 6865268 ~ 6865339 (-)
LOC117597596 NA non-coding downstream 10938 5911768 ~ 5913593 (-)
G94441 NA non-coding downstream 220740 5703581 ~ 5703791 (-)
G94325 NA non-coding downstream 362125 5560555 ~ 5562406 (-)
G94284 NA non-coding downstream 532683 5388102 ~ 5391848 (-)
G94058 NA non-coding downstream 588122 5332074 ~ 5336409 (-)
G94607 NA non-coding upstream 97062 6025360 ~ 6029235 (-)
G94608 NA non-coding upstream 101011 6029309 ~ 6030675 (-)
G94728 NA non-coding upstream 302558 6230856 ~ 6231165 (-)
G94730 NA non-coding upstream 304707 6233005 ~ 6233239 (-)
G94732 NA non-coding upstream 310383 6238681 ~ 6239748 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 138100 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 281582 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 1703924 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 1750937 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1850998 4070800 ~ 4073533 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 268945 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 1218202 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 1509793 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 2467514 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 3246357 9174655 ~ 9215815 (-)

Expression


Co-expression Network