kirrel3b (LOC108264823,LOC108434141,LOC103024239)


Basic Information

Item Value
gene id kirrel3b
gene name LOC108264823,LOC108434141,LOC103024239
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6476952 ~ 6680208 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927410.2
gacaggcagagagagagagaggtgctcGGTGAGCGCGAGCGCAGACAGAGACCGGCCGCACATCAACAGGAGACTCAGACAGTGCGcgcacacacttctacacacacacacacgcacacacacacacacacacacacacacacatatacgcgCGCGGGCTAGAAATAAGCATCAGAGCactcaagaagaagaagaagaagaaagaagacagAAACTCATTTCTTCCCACAGAGGATTCAGCAAGAAGCGCACCCTGGCACGAGCGGCGAGAAGTTCCCGGCTGTCTGTCACTGCGCCCCAGAGCCTCAGAGGTCACCGACACCTGCTCGTGCCCAGCGCTTCCGAGATGATGGTGCTGATCCTGCTGCTCTTCTGCCTCCCGGTTCACGgagcCCTTGCCATGTTTTCCCAGCAGCCCCAGGACTTGGTGGTAGTGGCTGGCCAACCGGTCACTCTGCCGTGCTCCATTCCTGGCTACCACGGTGTTGTACTGTGGATCAAAGATGGCCTGGCTTTGGGTGTTGGACGAGACCTATCAGGTTATCCTCGCTACACTGTAATTGGAGATCACAGTTCTGGGGAACACCACCTGAGGATCCAGAGGGTTGAGCTAGCGGATGATGCTGTGTTTGAGTGCCAGGCCATCCAGGCTGCCATGAGGTCTCGACCTGCTCGACTCACAGTTTTGGTTCCGCCAGATAACCCAGTTATTGACGGAGGCCCTGTGGTGAGCCTGAGAGCTGGAGACCCACTAAACCTGACGTGTCATGCTGACAATGCCAAGCCTGCCGCCTCCATCATCTGGATTCGAAATGGTGAGGTGCTAAATGGAGCCATGTACTCTAAGACCCTTCTTCGAGATGGCAGGAAGGAGAGTACAGTCAGCACTCTGTACATTTCACCATCCAACATTGAGACAGGACAGACGATCATCTGCCGTGCGTCGAACAAAGCTGTCCCCAATGGCAAGGAGAGCAGCGTCACTATTGACATCCAGCACTTACCACTGGTAAACCTCTCTGTTGAACCCCAGCCAGTGTTGGAAGGAAACCTGGTGAAGTTCCACTGCTCTGCTAAAGCCAATCCACCAGTCACGCAGTACAGGTGGGCTAAAGGAGGTCATGTGATCAAAGAAGTATCTGGAGACACCTATGAAGTCGTAGTGGACCACTCCTTCTTCACAGACGCCGTTTCTTGTGAGGTCACCAACCCTCTGGGGAGTACAAATATCAGCCGCAACGTGGACGTCTACTTTGGTCCTCGTATGGCTGCAGAGCCACAGTCATTGCAGGTGGACCTGGGATCAGATGCTGTGTTTAATTGTGCATGGACTGGAAACCCATCGCTCACGATCGTGTGGATGAAGAGGGGGTCTGGAGTGGTGCTGAGCAACGAGAACATCCTGACTTTAAAATCAGTGAGGCAGGAGGATGCTGGGAAATATGTGTGCCGTGCTGTAGTGCCTCGAGTCGGGGCTGGAGAGAAAGAGGTTACGCTTACAGTGAacgGGCCTCCGACCATCTCCAGCACCCAAACACACCAGGCTCCTCATGGAGAGAAGGGCCAGATCAAGTGCTTCATCCGCAGCACCCCTCCTCCCGACCGCATTGCCTGGTCATGGAAGGAGACAGTCCTCGAGTCGGGCACATCCGGCCGCTACACAGTTGAGACGGTGAGCACCGAGGACGGCGTTCTGTCCACCCTGACGATGAGCAACATCGTCCCTGCTGACTTCCAGACCATCTACAACTGCACAGCCTGGAACAGCTTCGGCTCTGACACCGAAATCATCCGCCTCAAGGAACAAGGCGGCTATCATTTGTTGTCCGCAGAGTCTCTGCCTGTGGCCGTGATTATCGGCGTGGCGGTGGGAGCTTTCGTCGCCTTCATCGTCCTCATCGGCACCATCGGGGCCTTCTGCTGCACACGTTCTCAGAGAAAAGACGCTCACCTGGTTATGCCCTCCCTCCCTGCCTCGATCTGTGCTCAGCAGAGAGAACTTTCAagcaaaattaaaacagaaaACCTCAAAGGCGTCGTCTCGACCAAGAACGATATCCGCGTGGAGATCGTGCACAAAGACCACAACGCTGCGCGGGAAAATGAGGACCATGCCGCCATGAAGCAGCTGATGATTGAACGGGGAGAATTCCAGCAGGAGTCTGTTCTCAAGCAGCTGGAGGTCctgcaggaggaggagaaagaataCCAGCACATCAAGGATCCCACCAATGGCTACTACAGTGTGAATACCTTTAAGGAGCACCACGGGACCCCCACCATCACGCTGGCTAGCACCCACAACAGCACCGAACTGCGCCGTGAAACCTCCACGGGCAAGCAGCGAGTACCCACAGGCATGTCCTTCACCAACATCTACTCAACCATTGGTGGTGCGCCCAACCCTCGTTTGTACGAGTATGGTGGGCGCTTCGTCCTGGGCACAGGCAGCAGCTCCATCGAGCTGTGTGAACGCGAGCTGCAGCAGCGTGCATCCCTCAGCGACTCAGGTTCCTTCATGGACACGCAATGCGACAGCAGCGCCAGCAGCTACGCGCACTTCGACAAGGACAGCAAGGCCTCGGCCGCCTCGTCCTCGTCACACCACTCGCATTCGTCCTCGCAGAACTCGGACCTGACGCGACCCCTGCAGAAGCGCATGCAGACTCACGTGTGACGACGTCTGCAAATGATGTCAGGAAGCAGATCAAGCACACAAGCtctctttttcttattctttttgtCTCAGTAATGTCATCATAAGAGCCTCGTACAACGCAGCTTTGGAAAAATCTTTGTGGTCGCGATTCCAAATGCAGACAAGTCAAATACCCTGAACTGAGAAGAAGCACCTTGAGTGTAGTACTAGTGAGAAACGTCTCAGCTACTGTACAGAACGCCGAAACAGGATGAAACCATGctgacaaaaatgacaaaacacaTGCAATGTGTGGAAAGCAGATCATAAAAGAATGGAGGCCTCCAGAACATGAACAGACTCTACAGCGCTGTTGACACCTCCAGTCCATGATGCCTTTGGCAGCACAGAAAGACAACATCCTGATTCTCTTGtcttctcttgctctcttgtaCAGTAGACCTGTCTAAGTGAGTGTGTATTATTTGACAGTaactcttttttccctttccccCACAGCTATGACTTTTACTTCTGTGTGGATGGAAacttataaaaaagaaaagaaaagaaaaaaaaaacgagtttGCCTACAGACTTAATCACTGTCAGTCAATATAGTTGGATTCCAGTCCTTCTGGATCCAAGAGATATATAGCTCTCGGCCATTCTGATAATATCtgtacattattcattttttttaatttccttgcTGTCTTTTGTCAGTCTGATCGTatgttttcttctctctttcgtGATTGTTGACTTTGCTGAACTTAACAAGGACTTACAAATGGatgatttgatctttttttatcTAAGATGATGTAAAATGCACAGGAtgttttggccataaagtgggAACAATGCAAATATTTTTGCTACTTCGTTAATGAAAGAAGGCTCAGACAGTGTGTGGCATGACATGGTCTTGTGAAGCCTCATACAAACCAGTGACACGATTTACACCATATACACTATTTACCTTTCTGTGGCTTTTAAGTCTTAGTATATAGTCATGTTGTTTACACTGACTGAAAGATTAATGGCTGAAAACCCCTGGACGGAGGGAAAACATTCCATCTGCTCTCACAGCCTTCAGACTGTACTGCAGTACACCTGCTCACTGTTTTAAGTGAACTGTCTGCACACTGAGATGTACCATTGAGACTCTGATTTCATTCTAGATTTGTTTGTACGatgtttgctcttttttttcagttgagaGCACTTAAATTTACTATggattacacacacaagcacctgTACTGATGCACTGTACAAACAAGAGCCAAAAGCAGAGCAGGAAGTAGTAAGAAGATGCACAATGCATGATGCATGCCAGGTGCAGACTGAGGCAAGCAGGTGCTGTTTGGTACGATTACAGCCTCATCTACatgatatgtatatgtattacacacactgttttgcCTGTGAGGCTTTGAGTAGAAGAAATTCCAAGTTTCTGATAAGGCAAGGACACCAGATAAGAATACACAGGATACCAGGTTTCTCTTTTCGTCAGCCGGCTCAACTCGCGTGCAGTGTGAGAACTGAGATTAAACATGAAGTGATAGCTGCTAGGGGTTGGACAGCTAGTCGACcagtaatttaacattaaaattacttttttcaaaattaaccttttccatagttaaaacaaaaactgattcaGGACGTCACTATTTTAGGCTGTTTTTTTAGTGCAGTTAAATGTTGATAAATAACAGCAAGGAATGCATCAAACTGCACCTCAACTAACAGATATAACCACAATTACTAGCTGTACAGGGGCTACACTTGCTTCTTTAGGCTACATGGTTAACAATGAAAATAACAAATCAGTGTAATAAATGTCCAAAATGATACACAGGTTttatcatattacactatttaaagCCACACtaattcttaaaatgcactcgCATACTCAGTTGAAATagttgattctgaaactgagagcgCACAACATGGAAACTTATGTCCATCAAAAGACCCCTTCCTTAAAACTCAGTGACCGGCCCTCTTTCTGTGTAGAACGCAATGTCTTAGGCAGCCACTGGGAGGTTTTTCCAAGCTGATGACCTGGCAGTTGAACCACTATGTTCAACTTTGTCCCCAGTAGCATCCGAAAAGGACTATGGATCAGCCTCTAAACTATCGGAGTTGCATTGCATAGTGATGTGCAAATGTAGCTCTGAAAACACTCCCTCACAACACTGGTCTTCATGAAGGAATTCATTATGccaaagtgaaggaaaaaaggataaagaaaaaaaaattgatccaAATTGGTAAAGTGATAATgatccattaaagcaaaagaaaataaaagaagactTTTCCCAGCATAGTCTTAAACAATGTGGTGTTGACTGTATTCTGAACTGGTTTCAactattatgaaatattttcagactaacaaattacatttaatctGCTTTACTGAGCATCTGTGTTACTGTTTTTCCACCACCCCAGCTAGTCAACAGCTCCCAACAACAGGAACTAGTGAATTTACTGGTCAACTAGTCAATTAGTATATGCAACCCCTAGTAGCTAGACAGTTCGGTGTGGAAAAGTTACCTGAAAATTACACTGGACATTTGTTGATGACTGCATCATGTAACACCCTCCTGCCAGTCTATACCACTCACATTCCAAATGTTACCATCGGTACAGAATAGATAACTTGATCAAGAAATCTAATGCCCATGCATACTGTATCAATAGAACATTAGGCGTGGGAACAGTCAAAGCCGATCCAGCCTCAATTACAAAACCGTTTATTTTAAAAGGTGACACGAGACAAtaagaaaatgattaaacatatttgtgtttattcccGTCATCACTGTAAAACACCTTGCTCAATAACAGCACAATCATGACATTGTTGTAGATAATGATGCTAAATCAAGTTCACAATGTATAGAAAGTGGGAGTTTGAAATTTCAGTGCATCTCTATGGAAACTGTGAAAGAATATGGAGCTGGCAGGATGTGTGGGCTTGCAATTATATGTATGTTGCACATAACAGTTAGCTAGTGTGGATTAAAATGCTGGTTAAAATGGAAGCAAAGTCTGCTTCAGAGATTCACCCTGTGTGAACTGAACTTCAGACAGCACCGTCTTATAAAACATTCATGTACATCGTCTGTGCAGTTTATGAAACATGTTGATGCAAAGTTTCCCTGTTGCAGAAAAACTTTTAGCTCGGTAATGACTAGTTCTCATGATTTTGTTGCTATTTAACTTTGTAGAGGTATAGAATGTTCAGAGCTCAATTTTAGTACTAGAGTCCAGAGCACTTTGGCAATCTCCTTCctttaatacagtaaataaacctGGTAATTaactgattagttgaatcagttATCTTGcagggaaatcaccaaactgtgctgGATTCTGGGTTTCCAGGGCTGGAATTGGCTGGAATTGGCCAGCTTATGGCCTAGGGGTCATCAACTGTTGGGCCACAGCCCATATTTCAGTGGATTAAACCaagcactcaaaaaaaaaatactgcagcagaAGCGAGAAAGAGAAATTGGACAGAGAAGTTGCATTTGTAATCAAGTGAATACCCATGCTCTATACTCTTAGGTTTCCTCAAGGGTTCTCTGGATAGTTATGGATATTTGCTTCCTAAGGTAATACGTATTTACAGTGGGCTAAAACAAAGCCAATTAGGATTCTAGATTTATATTTGCTACCAAGGGTGTCTAGAGCTTGGAGGTGATGGTTTACTTtcagtagaagaagaagatagagaaagcaaaactgttttaaaaaatttccattgttcaattaaatatataaaacattgatATGACTTTTATTGGTCTATCTCCCAGCGTGCCATCGTGAAGTGCATTGTTATAAAGGCTCTTGCGTGCAATGCACCATCTGTGAATGGGTCATGAAAGATTTATGAAGGATATGTTAGAAACTTATTGCAAATCGTTACAGTTTGGAGTTCTTTCACTACccctcccccttttttttcaaataatccATCTGCTATAACAAATTATTCATCAGATAGTGAATCAAGCAATTGATCAGATCAtccatttactttctttttaatcttccaatgcttttgttctttctttaaaaaatcaaattacTGACTGCTAGATTTTCAACCCACATCTCAGCCAGTCCAGGGTTTTGTTATGCTCCAGTTCCCAACATGTCAATTAGTTAATTAAAGGCTGTAAAAGCTTGAGTAAAGTGTTTCACCATCAATTATGCAGATGATACGTTTTATAATCAGCTTAAAACTCTGACCTAACCTTTGCAGGTAGGTCAGGTGTTTATTTCGGTCATTACTCCACTAACAAACCCGTCATTAGGAGGAAGGGGAAGACTGTATCCTGCTTATTAGACcatgtaaaacattttcactgttcTAACACCTCTGCTCAGCTCATGAAGATCCTAAGaataacagtgaaaaaaatacagaaatgtacagTGCATGATTTCCATCATCATCTTTCATAAGACTACTGTAGAAGTGTCATTTAAGTCAAATCAGCATTCAGGGCGCAGGCGCGTGAGATGAGTCATAAGATGCCGCAAACACTTTCCATAGCATTATATTTGCATTTCTGTAAGCTTTCATACATGAGTGCTGTTGACTGGGTCTAATTTTACAAATGGATTGGTGCCCACTGCAAGGCTTAAACACAACAAGCCTGTTTCACTGCTGATAATACAGCTCACAGCTTTCCATGTGCTTTATATGAATCCCTAATGCTCTTTGTATATAATTTGCTGTTATTTACCTTTCTTCTTTAGTTAGTTTGGATATTAGAAGGCGAAATGTCATTGACACTGTACAgacattcactttttttttgtagtttcatAAGAGAAAGTGGAAAACGTGGAGCTGGACATTTCTAAAAAAGAGACATTTGCAGATAATTTCTTCATGAatttctttttccactttttttttttttttacacaaaccaTTACTGTAACTCAGATGTTGGAAAATTGTGCTTCTATTAAACCATTAATTATGAGTTAACCTTGAATAGGAGCACATGaattctatcattttttttctgcatgcacagtgtacagtgttctTGGATACTGAAAACGGTGGATTCATTAGTTCTGTACACCATTTTATCTTCCCAAATCACTGAAGCTTGAAGCAGTACATGTAGTTTCATAAGACAACATTAGCGTTTAAGGAGTCCTTGTTTGAACCAAGCTGGAGCTGAATTTGCCCTGAAAATGGCCTTTTACAGataattttctcttttgtttcagttcatgttttttttttcattatccttacattttttaactatatatttttaaaactcattaCTGTACCTACTAAACCATAATTTTTGAATgatatcaattattattatattggtACAAGATTTTGACTTGCGTCACTAATTTGCTAATTTTCTTGCTACATGTTTTCACAACCACTAACTCTCCACAGGGCAATGGGCAGGCTTAGCAGTTGTAGCTTTTCTAAATAAGTAATTCATATTAAACGTTATATATGTAATAGCTCTCCACATTTTGCATGAGATCAGGCTGGGGTTATCTGCTCTTTAATTCCAACAATGTGTCCAATAAACCCCACAGCAAATCCAGAGCTATTTTTGAATTGTTCCTCCTTTCCACCTCCATCTTTAAAGCTACTGACAGCATTGTTCATGCAGTCCATCGCAATGCCCTTTAATATAGCATAACAGCACGTGACAATATTTTGCACCATATGGAACAGTTTATAGCACTTATACAGCATGGCAGAAAATATCTATGGCATTAACTCTAACAGAACAGAGCACCCGGATTACAAAGTTGATCTACAGATTGtttgaatagtgtgtgtgtgtatatgtacctTTCTTATCACACAATGCTGGTGGATTTAATCCTGTCCAAATGGGCACTGAGTGATTATATACACTTGTCCAAGCCACAGAGTCAGATAAGGATGGTGAAGGTTAAAGCGCTGACATGGGGAAAACTTTGGGCTGGATGTGGATGTGGCTTGCATGTCCTCTCCATTCctttttggaaatattttccCAGCCATTGGGTGTACAGTGTGATAAATTGCTTCAAATCTGTCCTGTTCTGCCATACTGCCTGTTTTCCATGTTTTGCTATCATGATGAGTCACTGAAGATGATGAGCGAGATGCAGACACAGGTCATACACTTGACTGGCTAGCTCTATTTCAGGTAATTTCTCTTCCCAGCAGCTATATTGCATCAGTAAGTTGTGTTCTGGCAAACCGTTGATAGTATGAATTCAGAAAACAGAGTGTGTAAATCAGATAGCATTGATGAGTAAAGCCGGGTTTACACTGCATGATTTTGTACAAGAATTCTTTGGTCACAAGTTGAGATCGGTGTTCCTACAATGCTCGCTCACCAGTGGCTTATTTAGTGCCATTGCAGCCAAAAAGAGCCGATAACAAAGTTCTGGCAACCTTAGATTATTATCAGAGTGTGAGTGCTGCTATGTCTCATTCATTTACTAGGTCTTATTTTGATAAGCTTTCTCAATATTAAGACTTAAATAGTAGAATTGTCTCTACAAGTGGCAAAAACAGGCTTCGGCAATTCTAATACCTGTCCTTTGGTCATACAAATCTTAGCCCCGCCAAAGTGACTTGCAAGCTTAAGCCAGCTTTACACTGTGCAATTTTTGGCCCAATTTTACTGTTGCAGACAAAAGACTAGATAATATGACTAAGTAATATGTAGTTTTCATTGGTGGCCAATGTAAAGCCATTTCAACCAAAGACAGCCAAGAAGAAAGTTCTGGatatgtcagattttttttttaaatctcaaagtGTCATTAACACTCATGAAAATCCACCAGTAGGAGGATGGCAAAGGATTATGCGAAAAtgaagaaacataaaaaaatactaatggccatgaaaaatatccttattacctcaataTCACTTTGAGGAATGTGTCTATACTCCATTTCTCTGTATAAGTCCAGATTTCACTGATCAATGACATAAGCAGAAagtagtcattttctttaatcacagctctatcattagaggattttcatcataaaaatctgacatggagaacacattattacacagaGTGCTTTACATTCCAGCCAAGATTTTAATGGGATCATCTCGTACATTGTAACAAGTAATAATCATAAAAGAGCATTGAAATCACATAGTGTAAAACTTGCTTAACTTTGTATGAAAGCCATGGTATCAAAGCTATCTTGTCTTGGCCTGGTGTTCCTttctacacaatacacacaaaaccATGAATCTCAGAATATCTCTGGTCATAGTGTAATTGCCATGGGCATTTTTTTtatgcctgatttttttttttttttttgactttt

Function

NR:

description
PREDICTED: kin of IRRE-like protein 3 isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927410.2 True 10039 mRNA 0.42 17 6476952 6680208

Neighbor

gene id symbol gene type direction distance location
trnam-cau_19 NA coding downstream 282805 6194075 ~ 6194147 (-)
gramd1bb gramd1b,gramd1bb,LOC108264679,LOC107717608,LOC107670606,LOC107733299 coding downstream 305833 6048476 ~ 6171119 (-)
LOC113534754 LOC108264847 coding downstream 434149 6031416 ~ 6042803 (-)
chst8 LOC108264863,LOC108264314 coding downstream 548654 5924531 ~ 5928298 (-)
LOC117597570 NA coding downstream 667435 5807422 ~ 5809517 (-)
trnap-agg NA coding upstream 185060 6865268 ~ 6865339 (-)
ets1 ets1,LOC106581098,LOC106612966 coding upstream 312928 6993136 ~ 7035230 (-)
LOC113534626 LOC108264086,LOC108264449 coding upstream 409765 7089973 ~ 7092426 (-)
LOC113534708 LOC108264086,LOC108264449 coding upstream 430551 7110759 ~ 7113794 (-)
LOC113534612 LOC108263907 coding upstream 442375 7122583 ~ 7126393 (-)
G94761 NA non-coding downstream 90668 6385400 ~ 6386284 (-)
G94746 NA non-coding downstream 209162 6263752 ~ 6267790 (-)
G94745 NA non-coding downstream 216807 6259340 ~ 6260145 (-)
G94744 NA non-coding downstream 217920 6258115 ~ 6259032 (-)
G94743 NA non-coding downstream 219555 6256918 ~ 6257397 (-)
G95072 NA non-coding upstream 321440 7001648 ~ 7002634 (-)
G95066 NA non-coding upstream 406303 7086511 ~ 7088041 (-)
G95227 NA non-coding upstream 647280 7327488 ~ 7327703 (-)
G95440 NA non-coding upstream 656157 7336365 ~ 7336566 (-)
G95449 NA non-coding upstream 707524 7387732 ~ 7430763 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 195422 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 690521 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 834003 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 2256345 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 2303358 4173288 ~ 4173594 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 466292 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 757883 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 1715604 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 2494447 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 3070674 9750882 ~ 9772020 (-)

Expression


Co-expression Network