zgc:56622 (LOC108264227,LOC108411019)


Basic Information

Item Value
gene id zgc:56622
gene name LOC108264227,LOC108411019
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9186380 ~ 9191072 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927430.2
gagagagagagagagagagtaaagttGAATGATTAACTGTCTAGATAAAGTAAGCGACAAACAGCAGTGGAGAGTGGAGAGGGAAAGAGCAGTAAAACAGGGAAGGgtgaaagacagaaaataaaaggaCTCTAAGAAACCGCAGGACAAACCAGCTTATTCatctgttaataaaataattcccATATGGAAGAGATTAGTGAACAGCCCAGGAAGATTGAACTAAATGATGGCAACTTGATGCCACTGCTGGGCCTGGGGACATGGAAGGGAAAGGACACAAGCTCAGAACTGTGTCAAGGTGCAGCTGAGACAGCTATAGCTGCTGGTTACCGTCACTTGGACACGGCCTACAGTTACCAGAATGAGGTGGAGCTGGGGAAGGCGATCCATTCCAAAATGAAGCAGGGCATCATTAGGCGTCAGGACATGTTCATCGTGAGTAAGTTGTGGGGCACTCATCATGCCCCTAAGGACATCCCTCTGTGTCTGAATAAATCTCTCAGTGACCTGCAACTCGAGTACCTGGACCTGTACCTGGTGCACTTTCCCGTGGGACTACAGAAAGTTGATAATGACCTCTTTCCAATGAAGGATGGAAAGATAATCACTTCAGACATTGATTATGTGGATGTGTGGCAGGGGATGGAAGCCCTGAAGGCCTCTGGAAAAGTAAAGAGTATTGGTGTGTCCAACTTCTCAATCCAACAACTGGAAAGGCTGCTGTCTGTGGCTAAAATTCCACCAGCTGTCAATCAGGTAGAGCTTCATCCTTATCTTGTGCAGTCTGATCTGATTGAATATTGTAAATCGAAGAACATTACTCTCACAGCCTATAGTCCCTTTGGCTCACCAGGAAGACCCAAAGAGTATCTTAGAGGAGACAAAGATCCTGAAAAGCTGCTGGAAGACCCTGTTGTTGGGGAAATTGCTGCAAAACACAGACGGACTCCTGCACAGattttgctGAGGTATCACATTGAACAGAATATTCCAGTGATTCCAAAGAGTGTTAAACCCAACCATATTCTGGAGAACACAAAGATCTTTGATTTCTGCCTGGACTTGGAGGATATGAGTGCACTCAGGTCTCTGAATCGTGACTGGAGGGCCTGCATCATTGAAGAGTTGGAATCTCATCCTTACTACCCCTTTAAGTAAAATGTTGTTAGTAGTGGATAATTGAGACGGAAGCTCACTGCGTCTCATCGTGAGTGCAGCTGTTCTGATGACAGAAAAATGATGACAGATTATCAACAAAGGCATTTAACTTGCTCAACTAATTGTCTGAATTAAAATACTCACAAGAGTGTTAGTGCCAAACTGGGATTGCAACATACACTGTGCTAAACTGAGCCTTAGAGAGAATGAATAAACATCTTTTTGTTGTTTA

Function

NR:

description
aldose reductase-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927430.2 True 1393 mRNA 0.44 10 9186380 9191072

Neighbor

gene id symbol gene type direction distance location
meak7 tldc1,LOC104945682 coding downstream 18106 9162522 ~ 9168274 (-)
plcg2 plcg2 coding downstream 24550 9134196 ~ 9161830 (-)
tmem243a LOC108264233 coding downstream 103771 9080039 ~ 9082609 (-)
si:ch211-233h19.2 LOC108264231,LOC108444275 coding downstream 110421 9049269 ~ 9075959 (-)
sema3d sema3d,LOC107563415 coding downstream 261110 8886228 ~ 8925270 (-)
tat tat,LOC106573680 coding upstream 2279 9193351 ~ 9201817 (-)
LOC113534306 LOC108264223 coding upstream 14273 9205345 ~ 9210930 (-)
LOC113534316 LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720 coding upstream 26172 9217244 ~ 9220204 (-)
tbxas1 tbxas1 coding upstream 158819 9349891 ~ 9414387 (-)
fgd4a fgd4 coding upstream 433991 9625063 ~ 9692085 (-)
G96421 NA non-coding downstream 99709 9084327 ~ 9086671 (-)
G96220 NA non-coding downstream 423784 8754558 ~ 8762596 (-)
G96170 NA non-coding downstream 556257 8629900 ~ 8630123 (-)
G96166 NA non-coding downstream 573366 8612815 ~ 8613014 (-)
LOC113534629 NA non-coding downstream 841722 8326831 ~ 8344658 (-)
G96484 NA non-coding upstream 135609 9326681 ~ 9338784 (-)
G96679 NA non-coding upstream 225950 9417022 ~ 9417414 (-)
G96677 hipk2 non-coding upstream 226514 9417586 ~ 9503941 (-)
G96840 NA non-coding upstream 628315 9819387 ~ 9884455 (-)
G97054 NA non-coding upstream 880481 10071553 ~ 10095358 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 708043 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 1491953 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 2028892 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 2904850 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 3399949 5713843 ~ 5786431 (-)
LOC113534661 NA other upstream 559810 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 631161 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 1075906 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 1336038 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 1981615 11172687 ~ 11179608 (-)

Expression


Co-expression Network