mterf2 (mterf2)


Basic Information

Item Value
gene id mterf2
gene name mterf2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11406563 ~ 11408320 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927458.2
CGGGAAAAGTAGAACAACAATATTCTGGTGTAAATATGCTGCACTAGATAGCTGTAGAAACGATTGTTTAAGATCCTATGTAGTGGACTTATACATGAGACTGTGTTTGGACTCGCTGgggttgtttgttgttgttttgtaaaGTGCCCATAGGTAGCAGACACGCACCTGTGACATGTGCAGACATGCTGCGCTCTCTCACAGTGTCCCTGATGTTTTGCCGGCGGGCCCAACAGCTCCCCAGGATGCATTGCTCCTCCATCAGGCAGGTTGAGAACACATCTGCCGTTGATGCACTTTACAACCTGTCAGTCGACATCTCGAAGATCCGAAAGCTCAAGGGCTGGGTGTTGTACCAGAGCCCAGTTTATGTGATGGAGACTGTGGCCATGCTGAGAAACTTGGGAGCCAGAGACACGCTGATTGCTCAAGTGCTTGAACACCACCCAGAGGCAATCCTCTGCCCACCTGAACATTTGGAGGCTCAAAAGGAACTGTGGATGTCCATCTGTGCCAGCCACAGCCATCTAGTTGGGATCATTGAAAAGTTTCCAGCCTCATTTTTCACCTCATCATGCCATATTGACCACCAAAGGGCCAATGTCACGTTCTTCCAGAACCTGGGCCTTAATAAACGTGTCATTGCTAAGCTGATGGCGAGCGCCCCGCAAAACTTCACAAGACCTGTTGAGCAGAACGAGGAGATGGTCCAAGCCCTTCAGAAGACATACTTGGAACTAGGAGGAAGTGAGGTCAATATGAAGGTCTGGCTGCAGAAGCTGCTCAGTCAGAACCCATACGTGCTCATGAAGTCTCCAGAAACCATGAGGAATAACTTCAACTTCCTGCATAAACAGGGCTTCACCAGCAGTGAGCTCCTTCAGCTTCTCTCCAGACTTAAAGGCTTTGTCACAGAGCTTCACCCAGAATCAATGGGTCTTTCTTTGAGTTACTCGCAGGAAACGCTGGCCTGCAGTGATGCTGAGCTACGACAGATCGTGCTGCAGTGCCCAGCATTGCTGTACTACTCTGTACCCATTTTGACAGACAGATTCAAATGCCTTCTCGGTGCTGGAATTAGCCTGCAGCAGATCATGCAGACACCCACCGTCCTGGAACTGACCACACAGATTGTCCAGTATCGCATTCAGAAGCTGCGTTCTTATGGTCATGATATTAagacagggagcctggagctccTCAATGGCACTAAGAAAGACTTTGAAATGAACTGTGGAAAATTGCTTCTGAGGCGAGAGCGTCCACTCTTTAACCCAGTAGCACCTCTAAGGACAGACGAGTGAGATTTCCTGTTGTGAAATGGTGCTATAAGCTTCTAATCAGAATCTCAAGGTTAACTCTGTTTATTGTCCTGCTGAATAACACAGCTATGTAGGTGTAATTACAGAGattatgattaaataattatgaCTCCTTA
>XM_034305059.1
CGGGAAAAGTAGAACAACAATATTCTGGTGTAAATATGCTGCACTAGATAGCTGTAGAAACGATTGTTTAAGATCCTATGTAGTGGACTTATACATGAGACTGTGTTTGGACTCGCTGgggttgtttgttgttgttttgtaaaGGTATGGCTTGGTGCTTATGGATGGTGTAGACTTCTGTTGCATAGCGTGTGAATGGGGCAGAGCATGCCCATAGGTAGCAGACACGCACCTGTGACATGTGCAGACATGCTGCGCTCTCTCACAGTGTCCCTGATGTTTTGCCGGCGGGCCCAACAGCTCCCCAGGATGCATTGCTCCTCCATCAGGCAGGTTGAGAACACATCTGCCGTTGATGCACTTTACAACCTGTCAGTCGACATCTCGAAGATCCGAAAGCTCAAGGGCTGGGTGTTGTACCAGAGCCCAGTTTATGTGATGGAGACTGTGGCCATGCTGAGAAACTTGGGAGCCAGAGACACGCTGATTGCTCAAGTGCTTGAACACCACCCAGAGGCAATCCTCTGCCCACCTGAACATTTGGAGGCTCAAAAGGAACTGTGGATGTCCATCTGTGCCAGCCACAGCCATCTAGTTGGGATCATTGAAAAGTTTCCAGCCTCATTTTTCACCTCATCATGCCATATTGACCACCAAAGGGCCAATGTCACGTTCTTCCAGAACCTGGGCCTTAATAAACGTGTCATTGCTAAGCTGATGGCGAGCGCCCCGCAAAACTTCACAAGACCTGTTGAGCAGAACGAGGAGATGGTCCAAGCCCTTCAGAAGACATACTTGGAACTAGGAGGAAGTGAGGTCAATATGAAGGTCTGGCTGCAGAAGCTGCTCAGTCAGAACCCATACGTGCTCATGAAGTCTCCAGAAACCATGAGGAATAACTTCAACTTCCTGCATAAACAGGGCTTCACCAGCAGTGAGCTCCTTCAGCTTCTCTCCAGACTTAAAGGCTTTGTCACAGAGCTTCACCCAGAATCAATGGGTCTTTCTTTGAGTTACTCGCAGGAAACGCTGGCCTGCAGTGATGCTGAGCTACGACAGATCGTGCTGCAGTGCCCAGCATTGCTGTACTACTCTGTACCCATTTTGACAGACAGATTCAAATGCCTTCTCGGTGCTGGAATTAGCCTGCAGCAGATCATGCAGACACCCACCGTCCTGGAACTGACCACACAGATTGTCCAGTATCGCATTCAGAAGCTGCGTTCTTATGGTCATGATATTAagacagggagcctggagctccTCAATGGCACTAAGAAAGACTTTGAAATGAACTGTGGAAAATTGCTTCTGAGGCGAGAGCGTCCACTCTTTAACCCAGTAGCACCTCTAAGGACAGACGAGTGAGATTTCCTGTTGTGAAATGGTGCTATAAGCTTCTAATCAGAATCTCAAGGTTAACTCTGTTTATTGTCCTGCTGAATAACACAGCTATGTAGGTGTAATTACAGAGattatgattaaataattatgaCTCCTTA

Function

symbol description
mterf2 Predicted to enable nucleic acid binding activity. Predicted to be involved in termination of mitochondrial transcription. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in mitochondrial matrix. Orthologous to human MTERF2 (mitochondrial transcription termination factor 2).

NR:

description
PREDICTED: transcription termination factor 2, mitochondrial

GO: NA

KEGG:

id description
K15031 MTERF; transcription termination factor, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927458.2 False 1438 mRNA 0.48 2 11406563 11408320
XM_034305059.1 True 1502 mRNA 0.48 2 11406563 11408320

Neighbor

gene id symbol gene type direction distance location
btbd11b btbd11,btbd11b,LOC107553977,LOC107664686,LOC107730921,LOC107672238,LOC107583829 coding downstream 23972 11320829 ~ 11382591 (-)
mlc1 mlc1 coding downstream 88371 11308950 ~ 11318192 (-)
panx2 panx2,LOC107583834,LOC107730920 coding downstream 99522 11293326 ~ 11307041 (-)
trabd trabd,LOC107583835 coding downstream 116511 11280607 ~ 11290052 (-)
selenoo1 selenoo coding downstream 126594 11271252 ~ 11279969 (-)
tmem263 tmem263,LOC107664679,LOC107583827,LOC107740170 coding upstream 41164 11449484 ~ 11453878 (-)
ric8b ric8b coding upstream 61768 11470088 ~ 11484458 (-)
rfx4 rfx4 coding upstream 81322 11489642 ~ 11506690 (-)
polr3b polr3b,LOC107664690 coding upstream 100455 11508775 ~ 11535664 (-)
endouc LOC108264851,LOC108425714 coding upstream 128922 11537242 ~ 11542381 (-)
G97607 NA non-coding downstream 215723 11190641 ~ 11190840 (-)
G97601 NA non-coding downstream 218540 11187495 ~ 11188023 (-)
G97246 mlycd non-coding downstream 745511 10657192 ~ 10661052 (-)
G97225 NA non-coding downstream 885566 10520795 ~ 10520997 (-)
G97224 NA non-coding downstream 887258 10519097 ~ 10519305 (-)
G97932 NA non-coding upstream 272409 11680729 ~ 11696665 (-)
G97931 NA non-coding upstream 282677 11690997 ~ 11693079 (-)
G98342 NA non-coding upstream 865955 12274275 ~ 12275411 (-)
G98343 NA non-coding upstream 867402 12275722 ~ 12276229 (-)
G98383 NA non-coding upstream 1069583 12477903 ~ 12478277 (-)
pdf pdf,spata2l other downstream 226955 11172687 ~ 11179608 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 824661 10527110 ~ 10581902 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 1111740 10266978 ~ 10294823 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other downstream 1488082 9822233 ~ 9918481 (-)
LOC113534661 NA other downstream 1634543 9750882 ~ 9772020 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 177737 11586057 ~ 11610964 (-)
plekhg7 plekhg7,LOC107583891 other upstream 344205 11752525 ~ 11769986 (-)
sspn sspn other upstream 462588 11870908 ~ 11878204 (-)
admb NA other upstream 903502 12311822 ~ 12345452 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 988187 12396507 ~ 12405281 (-)

Expression


Co-expression Network