LOC113534594 (LOC108263928,LOC108264122,LOC108263926,LOC108263927,LOC108437985,LOC108434030,LOC108434028,LOC108434080,LOC108434082)


Basic Information

Item Value
gene id LOC113534594
gene name LOC108263928,LOC108264122,LOC108263926,LOC108263927,LOC108437985,LOC108434030,LOC108434028,LOC108434080,LOC108434082
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4031091 ~ 4036208 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927497.2
TTGCCTACACCAGGTTGCCATCAGAGCCACAATGCTCTGGcaTGGATTTCAGGGAAGTGCGCTTCGCCCGTGCCATGGAGTTCACCATCAACGAAATCAACAACAGAACAGATCTCCTCCCGGGCATCACGTTAGGATACCAGATACATGATTCATGCTCCACTGTGCCGATGGCTATAAAAGTTGCATTTCAGCTTGCAAACGGTTTGGAGCCGGTTTTCAACTACACTAATTCCTGTTCAAAATCTGCAGATGCCGCTGTAACAGCTGTCATAGGAGATTCTGCTTCCACACAGTCAATCAGCATAGCCAGAGTGCTTGGTCTTTTTGGAATTCCACAGGTGAGTCACTATGCGACCTGCGCATGTCTGAGTGATAAGCATCAGTATCCTGCCTTCTTTAGGACCATACCTAGTGACCAACATCAAGCAGCTGCACTGGCAAGAATGGTCAAGCATTTTGGTTGGACATGGATTGGAGCAGTGCGCAGCGACACAGACTATGGAAATTACGGAATGGCATCATTCCTAAAAGCTGCTCAAGCAGAGGGCATATGTGTGGAATACTCTGAGGCCTACTACAGGACACAGCCTCGCAATAAACTGGAGCGAGTGGCAAACGTGATCCGCCGATCAACAGCCCGGGTTATAGTAGCGTTTATGGCATCAGGTGACATGAGGCTTCTTTTAGAAGAGCTATCACGACAGCCACCACCTCCACTTCAGTGGATTGGGAGTGAAACATGGATCACAGATCCTGATTTTCTGCGGTATAACATGTGCGCCGGCGCAATAGGGTTTGGTGTTCCCCGCTCAGTTATTCCTGGCCTTCGTGAGTTTCTTTTAGATATAACTCCAGCTAAAGCATTACAATCACCCCTGTTAACAGAATTTTGGGAAAGCTCGTTCAACTGTTACCTTAAAGGGAGAACAGACAACAAAGAGGGTGCACGAGAATGTGATGGCAGTGAGGACATTCACACGCTCCAGAACCCATACTTAGACACATCTCAGTTACGAATCACTAACATGGTGTACAAAGCAACGTATGCCATAGCACATGCCATCCACAGACTCATTTGTAATGACACACAGTGCAACAAGAATATTAAATTTTCACCATGGCAGATATTTGACCAGCTCAAAAAAGTAAACTTCACTACGAGAAATGGATTTCAGGTCTCATTTGATTCTAATGGTGACCCTCCAGCTGTCTACGAGCTCATAAACTGGCAGTATAAGAAGGATGGCGCTTTGGATTTTATCACAGTGGGCCAATATGACTCATTCAGACCAAGAGGACAGGAGTTCAGAATGAGCAGAAATATCAGCTGGGTTGGAGGACAGAAGGAGGTGCCAGTgtctgtgtgcagtgagagcTGTCCTCCAGGAACCAGGAAAGCTGTACAGAAGCGAAGgcctgtttgctgttttgacTGTATACCATGCGCTGAAGGAGAGATCAGTAACAAGACAGACTCATTGGATTGTTCGCACTGTCTTCCTGAGTTTTGGCCCAACGCCAAGCAAGACAGCTGCCTCCCAAAGCCTATTGAGTTCTTGTCCTGGGATGAAACTCTGGGTATTCTCCTGACAGTGTTCTCCATCGCTGGGGCCttcatggctgtgtgtgtgggtgctgTCTTTTACAAGCATAGGACCTCTCCTATCGTTAGGGCCAACAACTCTGAACTGAGTTTTCTGTTGCTcttctctctgactctgtgtttcctctgttcaCTTACTTTCATTGGTCGGCCCTCTGAGTGGTCCTGTATGCTGCGCCACACAGCATTTGGAATCACCTTTGTCCTCTGCATCTCCTGTGTACTGGGGAAAACATTGGTTGTGTTAATGGCTTTCAGGGCTACAATTCCAGGCAGTAATGTGATGAAATGGTTTGGGCCTCCACAGCAGAGACTCAGTGTGATTTCTTTTACTCTTATACAGGTCCTTATTTGTGTGGTTTGGTTAAAAATATCACCTCCTTTCCCCTtcaaaaatctaaaacactaCAAGGAAAGAATTATCTTGGAATGTGGCTTAGGTTCAGCTATAGGATTCTGGGCTGTGCTGGGATATATAGGAGTCCTAgcacttttgtgttttgttttagctTTTCTAGCTCGGAAGCTGCCTGATAACTTTAATGAAGCCAAATTTATCACATTCAGCATGCTCATATTCTGTGCAGTGTGGCTCACCTTTATTCCTGCTTATGTCAGCTCTCCTGGAAAATTCACTGTAGCTGTTGAAATCTTTGCTATTTTGGCTTCAAGCTTTGGTTtgattgtttgtatttttgctccaaaatgttttataattgtATTTAGGCCAGATCAGAATACCAAGAAACACATTATGGGTAAAGTACCCAGTAAGGCTCTTTGAGACCTTTACATGATATTTAAT

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927497.2 True 2411 mRNA 0.45 6 4031091 4036208

Neighbor

gene id symbol gene type direction distance location
LOC113534603 LOC108263926,LOC108263927,LOC108264122,LOC108434080,LOC108437985,LOC108434028,LOC108263928,LOC108434077 coding downstream 2696 4025027 ~ 4028395 (-)
LOC113534321 LOC108263927,LOC108437985,LOC108434028,LOC108434080,LOC108434027,LOC108434077,LOC108434030,LOC108434025 coding downstream 21157 4005783 ~ 4009934 (-)
LOC113534613 LOC108264187,LOC108264182,LOC108437986 coding downstream 45351 3982119 ~ 3985740 (-)
LOC113534401 LOC108264182,LOC108264187,LOC108437986,LOC107676311,LOC107569153,LOC107741377 coding downstream 62365 3964872 ~ 3968726 (-)
LOC113534747 LOC108264124,LOC108434067,LOC108434036,LOC108264108,LOC103037408,LOC108434043 coding downstream 68466 3959381 ~ 3962625 (-)
LOC113534744 LOC108264122,LOC108263927,LOC108263928,LOC108263926,LOC108434028,LOC108437985,LOC108434080,LOC108434030 coding upstream 5314 4041522 ~ 4045470 (-)
LOC117597563 LOC108264122,LOC108263927,LOC108263928,LOC108437985,LOC108434028,LOC108434080,LOC108263926,LOC108434030 coding upstream 13532 4049740 ~ 4053694 (-)
LOC117597564 si:ch73-125k17.2,LOC108264120,LOC108264121,LOC108264117,LOC108434033,LOC107564266,LOC107695204,LOC107742945 coding upstream 39048 4075256 ~ 4076641 (-)
LOC117597565 NA coding upstream 40450 4076658 ~ 4078462 (-)
LOC113534742 LOC108264121,LOC108264120,LOC108264117,LOC108434033 coding upstream 48914 4085122 ~ 4092659 (-)
LOC113534402 NA non-coding downstream 84715 3944987 ~ 3946376 (-)
G93639 NA non-coding downstream 295699 3735097 ~ 3735392 (-)
G93557 NA non-coding downstream 449885 3579017 ~ 3581206 (-)
G93505 NA non-coding downstream 576720 3425023 ~ 3454371 (-)
LOC117597513 NA non-coding downstream 608933 3406145 ~ 3422158 (-)
G93707 NA non-coding upstream 119049 4155257 ~ 4155497 (-)
G93710 NA non-coding upstream 135865 4172073 ~ 4172312 (-)
G93716 NA non-coding upstream 147547 4183755 ~ 4183993 (-)
LOC117597614 NA non-coding upstream 195252 4231460 ~ 4231831 (-)
G93753 NA non-coding upstream 510231 4546439 ~ 4546705 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 482340 3425718 ~ 3548751 (-)
G93047 NA other downstream 1262793 2759612 ~ 2768298 (-)
G93046 NA other downstream 1279922 2749388 ~ 2751169 (-)
fam214a fam214a other downstream 1900301 2035941 ~ 2130790 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other upstream 34592 4070800 ~ 4073533 (-)
G93711 LOC101487076 other upstream 137080 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 180810 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 1603488 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1677635 5713843 ~ 5786431 (-)

Expression


Co-expression Network