LOC113534597 (LOC108263925,LOC108434083,LOC105904798)


Basic Information

Item Value
gene id LOC113534597
gene name LOC108263925,LOC108434083,LOC105904798
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4105227 ~ 4109059 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927500.2
ATGACTCTAATACTTCTTTGCCTCCTGGTGCTCCACTTTTCCATCTTCAGTGTAACCTTAGAATCTCAGTGCACTCTGCAGAATAATTTTGAGCCAGGATTCATGGCTGGTGGAGACTTTGTCATTGGGGGCATTTTCCCCTTGCATTACAATCAGGAAATGCCAGATCTGAACTGCACATACAAACCAGGACCAGTGCGATGTAATGGGTTTGATCCCAGAGCTTTCCGCTGGGCTCTGACTATGAAGCTTGCTGTGGAGGAAATTAACAACAGTAGTGAGCTGCTACCTAACCACACTCTAggttataaaatatttgattcCTGTGCATATCCTTTAACTGGTCAGAGAGCAGCTCTGGCTGTTATGAATGGACCAATGGAAGCAGATAGACCCATGTGTTCAAGTGCTAGCCCAATGTTAGCCATCATTGGTGAATCTGGGTCAGCTCAATCTATTGTGGTGTCTAGAATTTTACGACCTTTCAGGATTCcaatgATCAGCTACTTCTCATCCTGTGCCTGCCTCAGTGACAGACGAGAATTCTCCACCTTCTTTAGGGTCATCCCCAGTGACGCATATCAGGTGAAAGCCATTGCCAAGCTGCTGATACATTTCAACTGGACATGGGTGGGTGTGGTTAGGGGTGACCATGCGTATGGGCGTTCTGCCCTACAGGGACTGCTTAATGAGCTGGAGGAtacaagcgtgtgtgtgtcttatcAGGAGATGATCCCCCTGCTGTATGACAGCCAGAGAGCAATAGAGATCATCCGTGTGATGAACAGCTCCAGTGCTCGAGTGGTCGTTGTGTTTTCAGCTGAGGGAGAACTCACGCCTTTTCTGAAAGACTATATGAAACTGAATGTTACTGGAATTCAGTGGATTGCCAGTGAGGCCTGGGTAACAGCTTCAGTGTTCACAGGAAGTGAGTATTACCCCTTCTTGGGAGGCACGATTGGGTTTGGGATACGGCAGGGCTATATTCCAAAGCTGAAAGATTATATAACAACGGTGAACCCACACGTGTACCCTTCCAACACCCTGCTGCCCCTCTGCACTGGACAAGAGATACTCAACAAGCAACACTCTGCCTACATGAACACATCTAGTCCTCGCATTGCTTATAATGTATACAAAGGAGTGTATGCTATTGCTCACTCACTCCACAATCTCATTTCCTGCAAACCTGGAAATGGCCCATTCAATAATTCCATGTGCGCTGATAGCACTAAAGTCTATCCATGGCAGCTCCAGCATTACCTACAAGAAGTCTCATTTACTATCTCAGGTGAGACAGTCAACTTTGATATAAATGGCGACTCGATCCCGTCCTACGACCTGATCAACTGGCAGAAGGGCACAGCTGGCAATATTGAGCTGGTTAAAGTGGGCATGTATGATGGAGCTCGAGAGGCCGGGAGTGAACTGGTCATTTATGACACAGCTATCACATGGGCCAGAGACAAGATCTCTGTTTGCAGTGACAGCTGCCCTCAAGGATATAGGAAAGCTGTCCGTCAAGGGGAGCCTTTGTGCTGCTTTGACTGTGTACCATGTGACAGTGGCAAGATTAGTAATCAGACAGTAGACTGCAtggtctgtcctgaagattatTGGTCTAACGCTGATGGAACAGCATGTATTCCCAAGGTCATTGAGTTCCTTTCCCATGATGCAATGGGGATAGCACTGACAGTTATTGCTGTTTTCGGGGCTTGTGTCACCTTAGCTGTATTTGCAGTCTTTCTCTACCACAGAAACACTCCCATTGTGCGTATGAATAACTCAGAGCTGAGTTTCTTCATCCTGTTCTCCTTGACCCTGTGTTTCCTGTGTGCATTGATCTTTATTGGGGAGCCCACATCCTGGTCATGCATGCTGCGCCACACTGCTTTCAGCATCACCTTCTCGCTCTGCATCTCCTGCATCCTAGGTAAAACCTTAGTGGTTCTTGCTGCCTTCACAGCCACCCAGCCTGGTAACAATGTGATGAAATGGCTCGGGCCTACACAACAGAGGATCATCATCTTTAGTTGCACCCTGGTCCAGGTGATCATTTGTGCTGCATGGCTCATATCTTCTCCTCCATTCCcctacagaaacacacagtatcAGTACTCTAAGATCATTCTAGACTGCAGGGTGGGATCTGAGCTGGCCTTCTGGTGTGTACTAGGCTATATTGGCATTTTGGcctgtttgtgtttcattttggcCTTTCTGGCTCGGAAATTGCCTGGAAATTTTAACGAGGCAAAATTTATTACTTTTAGCATGTTAATATTTTGTGCAGTGTGGCTGGCATTCATACCTGCCTATGTAAGTTCACCTGGCAAATTCACTACTGCAGTTGAAATATTTGCTATTTTAGCTTCAAGCTCTGGTCTTCTTTTGTGCTTATTTGCTCCAAAGTGTTACATTATACTACTCAAACCTGAAAAGAATACCAAACAGCATCtaatgggaaaataa

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927500.2 True 2475 mRNA 0.46 7 4105227 4109059

Neighbor

gene id symbol gene type direction distance location
LOC113534741 LOC108263925,LOC108434083,LOC107730035 coding downstream 5172 4093602 ~ 4100055 (-)
LOC113534742 LOC108264121,LOC108264120,LOC108264117,LOC108434033 coding downstream 12568 4085122 ~ 4092659 (-)
LOC117597565 NA coding downstream 26765 4076658 ~ 4078462 (-)
LOC117597564 si:ch73-125k17.2,LOC108264120,LOC108264121,LOC108264117,LOC108434033,LOC107564266,LOC107695204,LOC107742945 coding downstream 28586 4075256 ~ 4076641 (-)
LOC117597563 LOC108264122,LOC108263927,LOC108263928,LOC108437985,LOC108434028,LOC108434080,LOC108263926,LOC108434030 coding downstream 51533 4049740 ~ 4053694 (-)
LOC113534596 LOC108264119,LOC107707879,LOC107557164 coding upstream 612 4109671 ~ 4112923 (-)
LOC113534739 LOC108264121,LOC108264117 coding upstream 14763 4123822 ~ 4126781 (-)
LOC117597529 NA coding upstream 22206 4131265 ~ 4134060 (-)
LOC113534615 LOC108264116,LOC108434034,LOC108264184,LOC108264127,LOC108264128,LOC108264136,LOC108264183 coding upstream 28101 4137160 ~ 4140602 (-)
LOC113534616 LOC108264115,LOC108434087 coding upstream 34172 4143231 ~ 4149410 (-)
LOC113534402 NA non-coding downstream 158851 3944987 ~ 3946376 (-)
G93639 NA non-coding downstream 369835 3735097 ~ 3735392 (-)
G93557 NA non-coding downstream 524021 3579017 ~ 3581206 (-)
G93505 NA non-coding downstream 650856 3425023 ~ 3454371 (-)
LOC117597513 NA non-coding downstream 683069 3406145 ~ 3422158 (-)
G93707 NA non-coding upstream 46198 4155257 ~ 4155497 (-)
G93710 NA non-coding upstream 63014 4172073 ~ 4172312 (-)
G93716 NA non-coding upstream 74696 4183755 ~ 4183993 (-)
LOC117597614 NA non-coding upstream 122401 4231460 ~ 4231831 (-)
G93753 NA non-coding upstream 437380 4546439 ~ 4546705 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 31694 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 556476 3425718 ~ 3548751 (-)
G93047 NA other downstream 1336929 2759612 ~ 2768298 (-)
G93046 NA other downstream 1354058 2749388 ~ 2751169 (-)
onecut1 onecut1 other downstream 1995292 2091734 ~ 2109935 (-)
G93711 LOC101487076 other upstream 64229 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 107959 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 1530637 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1604784 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 2088184 6197243 ~ 6281530 (-)

Expression


Co-expression Network