LOC113534611 (LOC108264208,LOC108264094,LOC108264203,LOC108264204,LOC108264095,LOC108264099,LOC108264205,LOC108264093,LOC108264096,LOC108264212)


Basic Information

Item Value
gene id LOC113534611
gene name LOC108264208,LOC108264094,LOC108264203,LOC108264204,LOC108264095,LOC108264099,LOC108264205,LOC108264093,LOC108264096,LOC108264212
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4515183 ~ 4518934 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927531.1
CGCCTTGCTCAGACCATGATTTTTGCAATTGATGAAATCAACAGAAGCAACAGCTTGCTCCCAAATATCTCAGTTGGTTACAGGATTTATGACAATTGTCTCTCAAGATTGTTATCTATGAAGGCAGCCATGGCTTTGATGAATGGTGTGGAAATAACAGCAGATAGTGGCTGCTCTGGACAAGCAGTAGTACAAGCCATCATAGGGGAGTCAGAGTCTTCTCCTACTATAGCACTTGCAAAAACTACAGGGCCTTTTAAGATCCCAGTGGTAAGTCATGCTGCCACCTGTGAATGTTTGAGCAACAGAAAAGAGTATCCCTCTTTCTTTAGGACCATAGCAAGTGACTACTACCAGAGTAGAGCATTGGTATATTTGGTCAAGCACTTTGGCTGGTCTTGGGTGGGAGCTGTGAACAGTGATAATGACTATGGCAACAATGGAATGGCCATTTTTCTGAATGCAGCCAAAGAGGAGGGAATATGTGTTGAGTACTCAGAGAAGTTTGACAGGTCAGATACTGCCAAAATCATGAGAGTGGCGGATATTATTAAGAAAGGCACAGCcaaagtaattatcatatttCTTGCCCACTTTGATATGAAAATTCTAATAAACCAGCTTATTCTAAAAAATGTCACTGGCTACCAGATGATTGGTGTTGAAGCATGGATTACTTCTGTCAATCTAGTAACACCAGGAAGTTACAACATACTGGCTGGATCCATTGGTTTTGCTATAGGAAAACTGAACATTAGTGGTTTTGCTGACTATGTTGTCAACGAATTTTGGCAAACAGCAATCCCTTGCTTGCATACAGAGGGAAACATTTATCAAACTGAAAACAACTGCAGCAAATATAAAGATATGATTCAATTTAAAAACTACAATGAAGATGTATCAGAACTGAGGTATGCAAATAACATGTACAATGCGGTTTATGCTGTGGCACATTCTCTACACAGCCTTTTGAGatgcacagaaaaacagagtTGTGAGAAAATCAAAACAATACAACCGTGGCAGGTTGTTGAGTCTCTAAAAAAGGTAAATTTTACAACCAAATTAGGAGACCACATTTTGTTTGACAGCACTGGGGCAACGGCTGCAAAGTATGATGTAGTGAACTGGCAACGAGGGTTCAATGGAGAAGTGGAGTTTAAGGTTGTGGGCTATTATGATGCCTCTCTGCCATCTGGAAAGCAGTTTGTCCTAAATGCTGAAGATATAGTCTGGGCTGGAGAGAAAACAGAGAAGCCAAGgtctgtgtgcagtgagagcTGTCCTCCGGGAACCAGAAAAGCTGCACAGAAAGGAAGGCCTGTCTGCTGCTACGACTGTATACCATGTGCAGAGGGAGAGATCAGTAACCAGACAGattCAAATAACTGTGAGCAGTGTCCAGGAGAATTTTGGTCTAATGGTGACAgagataaatgtgtgttaaagGTCATAGAGTTTCTTTCATTTACAGAGGTTATGGGGATAGTACTGGtagctttttctttgtttggagCTACATTAACTGTGTTAGTAGCTATTTTATTTCTAGTAGAAAGGGACACGCCTATTGTTAAAGCCAACAACTCTGAACTGAGCTTCCTGTTGCTGTTCTCCCTGactctgtgtttcctctgttcaCTTACTTTCATTGGACGGCCCTCTCAGTGGTCCTGTATGCTGCGACACACAGCGTTTGGGATCACGTTTGTCCTCTGTATCTCCTGTGTACTGGGGAAAACAGTAGTTGTGCTAATGGCCTTCAGGGCTACACTTCCAGGCAGTAATGTTATGAAATGGTTTGGGCCTCCACAGCAGAGACTCAGTGTACTTGCCTTCACTCTCGTACAGGTTCTTATTTGTGTGCTGTGGTTAACAGTTTCTCCTCCTTTTCCCTACAAGAACATGAACTACTACAAGGAAAGGATCATATTAGAATGTAACTTGGGCTCAGCTATAGGTTTTTGGGCAGTGTTGGGTTACGTAGGAGTCCTTGCTTTCTTGTGCTTTGTTTTAGCTTTTCTAGCTAGAAAGTTGCCAGATAATTTTAATGAAGCTAAATTCATCACATTCAGCATACTCATATTCTGTGCTGTGTGGATAACCTTTATTCCAGCTTATGTTAGCTCTCCTGGAAAATTTACTGTAGCTGTGGagatatttgccattttggcatCAAGTTTTGCTctattattctgtatatttacacctaaatgttatattattctgtttaaacctgaactaaacacaaagaaaaatatgatgGGTAAAATGGCCTCTAAATCACATTAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927531.1 True 2292 mRNA 0.41 5 4515183 4518934

Neighbor

gene id symbol gene type direction distance location
LOC113534728 LOC108264097,LOC108264095,LOC108264099,LOC108264098,LOC108264205,LOC108264096,LOC108264093,LOC108264212,LOC108264094,LOC108264207 coding downstream 8184 4499062 ~ 4506999 (-)
LOC117597618 NA coding downstream 22444 4492546 ~ 4492739 (-)
LOC113534730 LOC108264099,LOC108264095,LOC108264096,LOC108264205,LOC108264212,LOC108264093,LOC108264097,LOC108264207,LOC108264094,LOC108264098 coding downstream 35576 4471011 ~ 4479607 (-)
LOC113534606 LOC108264205,LOC108264095,LOC108264093,LOC108264099,LOC108264203,LOC108264207,LOC108264208,LOC108264212,LOC108264204,LOC108264096 coding downstream 58651 4453199 ~ 4456532 (-)
LOC113534731 LOC108264100,LOC108434095 coding downstream 63694 4448274 ~ 4451489 (-)
LOC113534726 LOC108264095,LOC108264205,LOC108264099,LOC108264093,LOC108264096,LOC108264207,LOC108264212,LOC108264097,LOC108264094,LOC108264203 coding upstream 8274 4527208 ~ 4533871 (-)
LOC113534725 LOC108264094,LOC108264095,LOC108264099,LOC108264208,LOC108264205,LOC108264093,LOC108264096,LOC108264097,LOC108264212,LOC108264207 coding upstream 18147 4537081 ~ 4541768 (-)
LOC113534724 LOC108264203,LOC108264204,LOC108264095,LOC108264099,LOC108264208,LOC108264205,LOC108264096,LOC108264097,LOC108264207,LOC108264212 coding upstream 33205 4552139 ~ 4557113 (-)
LOC113534723 LOC108264099,LOC108264095,LOC108264205,LOC108264096,LOC108264212,LOC108264097,LOC108264093,LOC108264094,LOC108264203,LOC108264204 coding upstream 39163 4558097 ~ 4562322 (-)
LOC117597542 LOC108264205,LOC108264203,LOC108264208,LOC108264204,LOC108264207,LOC108264095,LOC108264093,LOC108264094,LOC108264097,LOC108264096 coding upstream 50369 4569303 ~ 4577572 (-)
LOC117597614 NA non-coding downstream 283352 4231460 ~ 4231831 (-)
G93716 NA non-coding downstream 331190 4183755 ~ 4183993 (-)
G93710 NA non-coding downstream 342871 4172073 ~ 4172312 (-)
G93707 NA non-coding downstream 359686 4155257 ~ 4155497 (-)
LOC113534402 NA non-coding downstream 568807 3944987 ~ 3946376 (-)
G93753 NA non-coding upstream 27505 4546439 ~ 4546705 (-)
G93896 NA non-coding upstream 264991 4783925 ~ 4785131 (-)
G93926 NA non-coding upstream 374652 4893586 ~ 4894074 (-)
LOC117597587 NA non-coding upstream 447700 4966634 ~ 4971603 (-)
G93988 NA non-coding upstream 488491 5007425 ~ 5011433 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 294576 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 341589 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 441650 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 966432 3425718 ~ 3548751 (-)
G93047 NA other downstream 1746885 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 1120762 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1194909 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1678309 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2627566 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2919157 7438091 ~ 7694427 (-)

Expression


Co-expression Network