LOC113534615 (LOC108264116,LOC108434034,LOC108264184,LOC108264127,LOC108264128,LOC108264136,LOC108264183)


Basic Information

Item Value
gene id LOC113534615
gene name LOC108264116,LOC108434034,LOC108264184,LOC108264127,LOC108264128,LOC108264136,LOC108264183
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4137160 ~ 4140602 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927535.2
GATGGGGATGTAATGATTGGTGGAATATTCTCCTTTCACAACAGCTGGGAACAGCCAGTACATGCCTTCACATCAGGGCCACAGCAATTCAATTGCAAGAGTTTGAGCCTCCGAGAATttcaaaatgcacaaacaatGGTATTTGCCATTGAGGAAATCAACAACAGAACTGATGTTCTCCCTGGTGTCAAACTGGGTTATAAAATCTATGATTCCTGTGGATCAGTAGAAATGGCCATAAGAGCCTCCTTGTCCTTAGTTAATGGCCATGGAGAAAATACAACTTTAATGTCTTGCTCCAATCCTGAAACAGTTCAAGCTATCATAGCAGAAACATCATCCACCCCAACAATTGCCATCTCTGCTACCATGGGACCTTTACACATACCTGTGaTCAGTCACTTTGCAACATGTGCATGCCTAAGCAACAAAAAGAAACACCCATCTTTTTTCAGAACTGTTCCCAGTGATTACTACCAGAGCAGAGCTTTGGCTAAGTTGGTCAGGCATTTTGGCTGGACATGGGTAGGGGCCCTATGCAGTGATAATGACTATGGGAACAATGGTATGAACACCTTTATTAGTGCAGCCAAAGAAGAGGGAGTTTGTGTTGAATTTTCAGAGGCATTCTTTAGGACAGACTCAAGAGAAAAGATTCTAAGAATAGTTGAGATCATTAAGACTGCAACCTCCAAAGTTATTGTAGCTTTTATCTCATACTCTGATATGGAGGCTCTTCTAAAGGAAATCGCCTTGCAGAACATCACTGGGTTTCAGTGGATTGGAAGTGAATCCTGGATCTCTGACATGACCATCGCTACTGCTGAGTGGCAGCCTATTCTGAAAGGATCCATGGGGTTTGCTATCCCAAAAGCTCAAATCAATGGCCTACGGGAATTTCTGACTAAGCTTAATCCAGGTTCTGATGTAGATCTTTACAAAGAGTTGTGGGAGACAATTTTTGAATGCAAACTACCCACAAGAGAAAATGGTGAGGTCAAAGAAATGTGCAAAGGCAATGAAAAACTCAGTGAAGTGCAGAACCAGTATACAGATGTTTCAGAGTTACAAATTGCAAATAATGTATACAAGGCTGTGTATGCTGTGGCTTATGCCCTGCATAACAGTTATGGCTGTTCAAAGGGGGACAGTGGACAAGAAGGTGCTATTATGTGCACAAACCTAGCAGATAACCATCAACCATGGCATGTTCTCAATGAGATGAAGAAACTCCATTTCACCACTACCACAGGAGAGGATGTATTCTTCGATGAGAATGGAGACCCAGCAGCGAGGTATGATTTGCTTAACTGGCAGCAAGGCAAGGATGGTAAAACAGTGTTTGTTAAAGTAGGCTTCTATGATGCTTCTTTACAAACACACCTTCAGCTGTCATTTAACAACATCAGTATAGCCTGGGCCCACAGGAAACTGCAGGTGCCAGTCTCTGTGTGCAGTGAGAGGTGTTTCCCCGGCACCAGGAAGGCTGTGCAGAAAGGAAGACCGATCTGCTGCTATGATTGTATACCATGTGCAGAGGGGGAAATCAGTAATACAACAGatTCTGTTACTTGCTTCAAGTGTCCACCTGAACTGTGGTCTAATGACAAGAAAGATAACTGTGTCTTAAAGCTGGTGGAATTCCTGTCATTTGAGGAAATAATGGGAACCATTcttgtgttgttttctttgttagGAGTGTCTTTCACCATCGCCATTGCtgtaattttctttatatacaAGGACACACCAATTGTTAAAGCAAATAATTCAGAACTAAGCTTCCTGTTGCTCTTCTCCCTGACTCTGTGTTTCCTTTGTTCACTAACTTTCATTGGACGGCCCTCTGAATGGTCCTGTATGCTGCGCCACACAGTATTTGGCATCACGTTCGTCCTCTGCATCTCCTGTGTTCTGGGAAAAACAGTAGTGGTGTTAATGGCCTTCAGGGCTACACTTCCAGGCAGTAACATCATGAAATGGTTTGGGCCGGTACAGCAAAAACTCAGTGTTCTTGCATTCACGCTTATACAGGTCCTTATTTGTGTGATTTGGTTAACAATTTCCCCTCCTTTCCCATACAAGAACATGAACTACTACAAGGAAAAGATCATATTAGAATGTAATGTAGGTTCAGCTATAGGTTTCTGGGCCGTGCTGGGGTATATAGGACTTTTGgcacttttatgttttattttggctTTTCTGGCCCGGAAGCTGCCTGACAATTTCAATGAAGCCAAATTCATCACATTCAGCATGCTCATATTCTGTGCAGTTTGGATCACCTTTATTCCAGCTTATGTCAGCTCTCCTGGAAAATTCACTGTAGCTGTAGAGATATTTGCTATTTTAGCCTCTAGTTTTGGTTTACTATTCTGCATATTTCTCCCAAAGTGTTATGTAATTATACTGAAACCAGAGAAGAATACTAAAAAGCAAGTGATAGGGAAAGCATCTGTTAAATAACTTAGCTCCAAACTTATTTAAAGCACATGTTCTAGTTTAGCTGAAAGTGTAAAGCTGTACCCTGTTATTAACTCCAATAAATAAGCTTTTGCAgcactttttact

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927535.2 True 2574 mRNA 0.42 6 4137160 4140602

Neighbor

gene id symbol gene type direction distance location
LOC117597529 NA coding downstream 3100 4131265 ~ 4134060 (-)
LOC113534739 LOC108264121,LOC108264117 coding downstream 10379 4123822 ~ 4126781 (-)
LOC113534596 LOC108264119,LOC107707879,LOC107557164 coding downstream 24237 4109671 ~ 4112923 (-)
LOC113534597 LOC108263925,LOC108434083,LOC105904798 coding downstream 28101 4105227 ~ 4109059 (-)
LOC113534741 LOC108263925,LOC108434083,LOC107730035 coding downstream 37105 4093602 ~ 4100055 (-)
LOC113534616 LOC108264115,LOC108434087 coding upstream 2629 4143231 ~ 4149410 (-)
LOC113534737 LOC108264111,LOC108264124,LOC108434067,LOC108434036,LOC108264109,LOC108434043,LOC103037408,LOC108264189 coding upstream 51083 4191685 ~ 4195052 (-)
LOC117597613 NA coding upstream 85629 4226231 ~ 4231317 (-)
LOC113534733 LOC108434066,LOC108264124,LOC108263989,LOC108434049,LOC108434059,LOC108434091,LOC108434067,LOC108264112,LOC108264111 coding upstream 115715 4256317 ~ 4270798 (-)
LOC117597527 LOC108264109,LOC108264108,LOC108264124,LOC108264193,LOC108263989,LOC108434035,LOC108434067,LOC108264189,LOC108264102 coding upstream 128877 4269479 ~ 4273667 (-)
LOC113534402 NA non-coding downstream 190784 3944987 ~ 3946376 (-)
G93639 NA non-coding downstream 401768 3735097 ~ 3735392 (-)
G93557 NA non-coding downstream 555954 3579017 ~ 3581206 (-)
G93505 NA non-coding downstream 682789 3425023 ~ 3454371 (-)
LOC117597513 NA non-coding downstream 715002 3406145 ~ 3422158 (-)
G93707 NA non-coding upstream 14655 4155257 ~ 4155497 (-)
G93710 NA non-coding upstream 31471 4172073 ~ 4172312 (-)
G93716 NA non-coding upstream 43153 4183755 ~ 4183993 (-)
LOC117597614 NA non-coding upstream 90858 4231460 ~ 4231831 (-)
G93753 NA non-coding upstream 405837 4546439 ~ 4546705 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 63627 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 588409 3425718 ~ 3548751 (-)
G93047 NA other downstream 1368862 2759612 ~ 2768298 (-)
G93046 NA other downstream 1385991 2749388 ~ 2751169 (-)
onecut1 onecut1 other downstream 2027225 2091734 ~ 2109935 (-)
G93711 LOC101487076 other upstream 32686 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 76416 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 1499094 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1573241 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 2056641 6197243 ~ 6281530 (-)

Expression


Co-expression Network