LOC113534639 (LOC108264108,LOC108264106,LOC108264189,LOC108264104,LOC108264105,LOC108264109,LOC108264107,LOC108264102,LOC108263989,LOC108264193)


Basic Information

Item Value
gene id LOC113534639
gene name LOC108264108,LOC108264106,LOC108264189,LOC108264104,LOC108264105,LOC108264109,LOC108264107,LOC108264102,LOC108263989,LOC108264193
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4341566 ~ 4344946 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927564.1
ATGGAGTCAATCTTTACACTCTTGCATATAGTAATGGCCATCATCAATTCTTCCAGGGCCCAAGAAGATACCTGTAGCGTGCGTGGAGAGCCTGCATACCCCCAGCTATGGAAGCATGGTGATATCATTGTTGGAGGAATTTTCCCTTTCCATAGTAAATGGGAAATCACAGACTCATCCTATTCGGTCATGCCACCTGCAATGAATTGCATGAGTCTGGAATTTAGAGCCCTGCAGTATTCACAGACCCTGATCTTTGCAATAGAGGAGATCAACAACAGTTCATCTCTACTGCCTGGAGTCTCACTGGGCTACAAAATCTATGATACCTGTGGTTCTGCAGCACTGGGGGTGAAAGTAGCAATGACACTTGTGAATGGAAATGAGAACTCAGTCTCAGACCAGATCTGCACAAAGCCAGCCCAGGTGCAAGCCATAATAGGAGAGACATACTCATCTGTGTCCATGGCCATAGCAAAGAGTATTGGGCCTTTCAGCATGCCTTtgATCAGTTATTATTCCACCTGTGAGTGTCTGAGTGATAAAAGGAAATATCCTTCATTTCTGCGCACCATTCCCAGTGATTACTACCAGACCATAGCACTTGCAGAGATGGTCAAACACTTTGGATGGACCTGGGTGGGAGCAATAAGAAGAGATGATGATTATGGTAACAGTGGGATGGCTGCATTTACAAAAATTGCAGAACAACTAGGCATATGTTTAGAATACTCCCTTCCATTTTTCAGAACCTACTCACAAGAAAAAGTGTTGAGGATTGTTGAGCAAATTAAAAGCTCCACTTCTCGAGTGATAGTGGGATTTGTCACTCCCTGGGACCTGGAGATTTTGCTTCATGTATTTTCTGAACACAACATCACTGGATACCAGTGGGTAGGAACTGAGGGATGGATTGCTGATCCAGTTGCAGTCACATTGGACAAGTACAATATTCTGCAAGGAGCTATTGGGCTAGCAATTCCCAAAACAACAGTAACAGGTTTGAAGGACTTTATTCTGGATATAAAACCACTGAAATCTGCAGGCAGTGCAATTTTTATGAAATTCTGGGAATCTATGTTTACTTGTAAATATGGTATGCAGAATAATTCAAAGGACATACCAGTGTGCACAGGTGAAGAGAAACTGTCTGACATCGAAAACACCTTCACTGACATGTCTATGATGCCTATTTTCAGTAATGTGTATAAAGGAGTATATGCCATTGCCCATACACTACATGAACTTCTTGGCTGCAAACAAACATGTCTTACAAAGATGCAGCCTGATCCTTTCACATTTCTAGAACACCTCAAAAAGGTGCGTTTCAAAACCAAGGAAGGTGAAGAGgtttattttgataaaaatgGTGATCCTCCggcaaaatatgaaataataaattggcaaaaaaataaagaaaatcaatatgAGTTTGTCACAGTTGGACTTTATGACTCCTCTGTTGCTGCTCAGGATCGACTAGCAGTAAACATGGCCTCCATTGTCTgggcacaaaataaaaatcaaATGCCAAAATCTGTATGCAGTGAGAGTTGCCTCCCTGGCACAAGGAAGGCTGTACGGAAAGGAAAGCCTATCTGCTGTTTTGACTGCATACCATGTGCTGCTGGAGAGATAAGTAATATCACAGattcTATTAAATGTGAACAATGCCAGCAAGATTACTGGTCAAATGCAGACAGAGATCAATGTGTAAAGAAGGAAATTGAATATCTGTCCTATGAAGAAACTATGGGAATTTTGCTAACGGCAGTGTCCATTATCGGTGCTTTAATGACATTGGTAATAGCAATCATATTCTATAGATATAAAAATACCCCAATAGTCAAAGCAAACAACTCTGAACTCAGCTTCCTACTGCTCTTCTCGCTGACTCTGTGTTTCCTTTGTTCACTTACTTTCATTGGCCGGCCCTCTGAGTGGTCCTGTATGCTGCGCCACACAGTGTTTGGGATCACTTTTGTCCTCTGCATTTCCTGTGTTCTGGGAAAGACAATAGTGGTGCTAATGGCGTTCAGGGCTACAATTCCAGGCAGTAATGTTATGAAATGGTTTGGGCCTCCACAACAGAGACTCAGTGTTCTTGTCTTCACTCTCATACAGTTCcttatttgtgtgctttggttaTCAATATCTCCTCCTTTCCCCTTCAAAAATCTAAAGCACTACAAGGAAAAGATAATTCTAGAATGTCATTTGGGCTCAAATTTAGGATTCTGGGCTGTGCTTGGTTATATAGGCCTTCTGGctcttttatgttttgttttggctttCCTCGCTCGAAAATTGCCTGATAATTTTAATGAGGCTAAATTCATTACATTCAGTATGCTAATGTTCTGTGCAGTTTGGATCACTTTTATTCCAGCTTATGTTAGCTCTCCTGGAAAATTCACTGTAGCTGTGGAAATATTTGCAATTTTAGCATCAAGCTTTGGTTTGCTGTTTTGTATATTTCTACCAAAGTGTTACATAATCATACTGCAACCAGAGAAGAacaccaaaaaacaaataatgggGAAGGTATCTATTAAATGA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927564.1 True 2559 mRNA 0.41 6 4341566 4344946

Neighbor

gene id symbol gene type direction distance location
LOC113534650 LOC108264109,LOC108263989,LOC108264108,LOC108264189,LOC108264193,LOC108264106,LOC108264102,LOC108264124,LOC108434067,LOC108264104 coding downstream 8635 4329217 ~ 4332931 (-)
LOC117597581 LOC108264109,LOC108264108,LOC108264193,LOC108263989,LOC108264124,LOC108434035,LOC108264189,LOC108264106,LOC108434067 coding downstream 43795 4294055 ~ 4297771 (-)
LOC117597527 LOC108264109,LOC108264108,LOC108264124,LOC108264193,LOC108263989,LOC108434035,LOC108434067,LOC108264189,LOC108264102 coding downstream 67899 4269479 ~ 4273667 (-)
LOC113534733 LOC108434066,LOC108264124,LOC108263989,LOC108434049,LOC108434059,LOC108434091,LOC108434067,LOC108264112,LOC108264111 coding downstream 70768 4256317 ~ 4270798 (-)
LOC117597613 NA coding downstream 110249 4226231 ~ 4231317 (-)
LOC113534706 LOC108264189,LOC108264106,LOC108264108,LOC108264104,LOC108264109,LOC108264107,LOC108264105,LOC108264102,LOC108263989,LOC108264124 coding upstream 9721 4354667 ~ 4358066 (-)
LOC113534610 LOC108264106,LOC108264189,LOC108264108,LOC108264104,LOC108264107,LOC108264102,LOC108264109,LOC108264105,LOC108263989,LOC108264193 coding upstream 26428 4371374 ~ 4374959 (-)
LOC113534636 LOC108264105,LOC108264108,LOC108264104,LOC108264107,LOC108264106,LOC108264189,LOC108264102,LOC108264193,LOC108263989,LOC108264109 coding upstream 49948 4394894 ~ 4398473 (-)
LOC113534627 LOC108264104,LOC108264107,LOC108264108,LOC108264102,LOC108264106,LOC108264105,LOC108264189,LOC108264193,LOC108264109,LOC108264124 coding upstream 55895 4400841 ~ 4404294 (-)
LOC113534655 LOC108264102,LOC108264193,LOC108264104,LOC108264107,LOC108264108,LOC108264106,LOC108264105,LOC108264109,LOC108264189,LOC108263989 coding upstream 66447 4411393 ~ 4414689 (-)
LOC117597614 NA non-coding downstream 109735 4231460 ~ 4231831 (-)
G93716 NA non-coding downstream 157573 4183755 ~ 4183993 (-)
G93710 NA non-coding downstream 169254 4172073 ~ 4172312 (-)
G93707 NA non-coding downstream 186069 4155257 ~ 4155497 (-)
LOC113534402 NA non-coding downstream 395190 3944987 ~ 3946376 (-)
G93753 NA non-coding upstream 201493 4546439 ~ 4546705 (-)
G93896 NA non-coding upstream 438979 4783925 ~ 4785131 (-)
G93926 NA non-coding upstream 548640 4893586 ~ 4894074 (-)
LOC117597587 NA non-coding upstream 621688 4966634 ~ 4971603 (-)
G93988 NA non-coding upstream 662479 5007425 ~ 5011433 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 120959 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 167972 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 268033 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 792815 3425718 ~ 3548751 (-)
G93047 NA other downstream 1573268 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 1294750 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1368897 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1852297 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2801554 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 3093145 7438091 ~ 7694427 (-)

Expression


Co-expression Network