LOC113534648 (LOC108264479)


Basic Information

Item Value
gene id LOC113534648
gene name LOC108264479
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 2019857 ~ 2033455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927595.2
gtgaaagtgaaagtgaaagtggagAGGTTGTTTTGTTCCTGTGCCGCTGATCAGAACACACAAAGTCTGCATTTATACTTGAAGAAAATACCTTTAAGAAAACACACCACAGACCCCTGAAAATGAGTACCCCTGATGATGGTAAAGAGGAGAGATCTCAGAAAGAAAGATCTGACTCGCCTGCACCCAGCGCTGTCTCTATGAAGAGTGACCGGTCAATGGGTGAGCCAATAGTGTTtcaacagacagagaaagaaagTCTTATTGATCAAAAGAGCTCGGAGTCACCTGAAACCAGCTCTGTGTCTATGAAGAGTGACCGCTCAATGGGTGAGCCAATTGtgtttcagagagagaaagaaagAGACAAGCGCGGCATATCAAATCCTTCCATGGTGCTGGATGCTGATTCCCAGGTCCAGCATCTGAGCCAAGAATATCTAGCGAGctatgatggagtgatggaagACAAGGAGCATCAGGGCAGTACAAGAGAACTGGGTCCTGTGTTGAAAAGTTTCAAATCCAAACTGCAGAAGAAATTTCAGATGATTAATGAGGGAATCTCAATACATGGAAACTCAAAACTTCTAAATGAGGTTTACACAGAACTGTGTATCACATCAGATTGTGGGTGTGGACATGTCAATGATGAACATGAGGTCAGACATATTGAACAGGCATGCAGGAGTCTAATAACAGAGGAGTCCATCAACTGTAATGACATATTTAAACCCTTACCTGGAGATGAGAATCCCATCAGAACTGTGCTAACAGAAGGCATTGCTGGAATTGGGAAAACAGTGTCTGTGCAGAGGTTtgttctggactgggctgaaggaaaagcaaatcaggattTGGACTTCATTTTTCCCTTTAACTTTAGGGAGTTCAATTTTTTGAAGAGAGAAAATCTCAGTTTGTTGGAGCTTCTCCATTGTTTTTTCCCAGAAACCAAAGAACTTAAAACAGACTATCATCGCTACAGAATCATGTTCATCTTTGATGGACTGGATGAGTGTCGTTTTTCTCTTGATTTCCTAAACAGCAAAAGGTTGGCTGATCTAACAGAGTCAGCTTCAGTGGATGTACTGTTAACAAATCTTATTAACAGGAATCTGCTTCCGTCTGCATTCCTCTGGATAACATCTCGGCCAGCAGCGTCCAGTCAGATTCCTCCTGCTTATATTGACAGAGTAACAGAGATCCGAGGGTTCAGTGACCCTCAGAAAGATGAGTACTTCAGAAAAAGAATCAGTGATCAAACCCTAGctaataaaatcatcacacacctgAAGTCGTCGCGAAGTCTTTACATTATGTGCCACATGCCAGTCTTCTGTTGGATTGCAGCGACTGTTCTCGAGGGAATGTTCAGTGAAGCAGAAACTGGAGAGGTCCCCAAGAccctgactcaaatgttcacacatttCCTGATCTTGCAGATCAAACATCGATCCcaaaagtacaaaaaacatgaaatggaTCCTGGACAGATTGCAGATGTTGTACTAAAACTGGGAAAGCTGGCATTCcagcagctggagaaaggaaacctgatcttttACGAGGAGGACATCATAGAGTGTGGCATTGAGGTCCGAGAGGCCACGGTGTACTCAGGAGTTTGCACTCAGATCTTTATCGAGGAAGTCACTTCACATCTGGGGAAGGTGTACAGCTTTGtgcatctgagtgttcaggagcaTCTTGCTGCTGTGTATGCATTTCTCTCATGTATCAATGGAAATCTCTCAAAACAACAACCTGAAATCTTCGGCCTCTCCAGCAAGGCAACACTGTTAGACCTTCTAAAGGCAGCAGtagacaaggccttacagagtaagaatggacacctggaccttttCCTCCGCTTCCTTATGGGTCTCTCACTGCAGTCCAATTCACTTCTCTTACAAGACCTACTGACAGAGACAGGGCGCAGCTCTGTGAGCAAAAATGCTGCTGACACAAACAAGGAAATAACCatgtacatcaaggagaagattaGAAAGAATCCATCAACCTgcaaatccatcaatctgttccattGTCTGAATGAGCTGAATGACCAGTCTCTGGTACAGGAAGTTCAAACCTTTTTGAGTAAAACAGAAAATCATTGCCTCCATAGAGTCACACTTTCTCCAGTTCAGTGGTCAGCTGTGGTTTTCTTGTTGCTGAACTCAGAAAAGGACCTTGAAGAGTTTAACCTACAGAAATATTCAGCATCAGAGTATTGTTTGATAAACATGTGTCCAGTTATCAAAGCATCCAGAAAAGCTCTGCTGTGTGGTAGTAATCTTACAAAGAATATTTGTAAAAGTCTGGGAAAATGTCTCAGCTCAGTCTCTTCATGTCTGAGAGAGCTGGACCTGAGTGATAATAAACTACAGGATTCGGGAGTCAAACTGCTTTCTGCTGGGTTGGAGagtccacactgtaaactggagatcTTAAGaCTTGGTGACTGTGATCTCACAGAGAAAAGCTGTGCAGTTCTTGCTTCAGTTCTTACCTCTAAGTCGACACATCTGACAGAGCTGCGTCTCAGCcgcaataaactgcaggattcaggagtgaagcggCTCTCTGAGGCCCTGCAGAGCCCACGCTGTAAACTACAGACACTGAGGCTGAATACCTGCAGCATTACGGAGGAAGGCTTTACTGCTTTGATTTCAGCTCTGAGGTCGAACCCTTCTCACCTGAGAGCGCTGGATGTGGGGAGAAATAAAGCAGGACAGACGGGAGTCAACCTGCTCTCTGATCTCTTACAGGAACAGAGCTGTAAACTGGAGAAATTAAAATTGTTTGACTGTGGCATTACACAGGAAGGTGGCACTCATCTGATTTCAGCTCTGATCTCAAACCCCTCTCACCTCAGAGAACTGGATCTGGGCTGGAATAAAATAGGAGACCCGGGAATAAAATTAATCTCTGATTTCCTAAAGAATAAACTCTGTAAACTGGAGATATTAAAGTTGCATGACTGTAACATTACAGAAGAAGGCTGTGTTGCTCTTACTGAAGCTCTGAGGTTAAATTCACACCTGAGAGAGCTCGATCTGAGCGCTAATAATGTAGGAGAAGagggagtgaagctgctctctgatatACAGGAGGATGAAAAGTGCACACTGGAGAAGTTGGActtgtcacgttgCTGAGAAACAGCAAGGAAGCGTAAAcgtctctgtcctgaagatgtcagaaaacgtaaagttacagctttacctctgtaaatatatgtattctttttattcatatGGAAACATGATATGATGAATCATCATGAGTGTATAGCTACcatattcgtgtgtgtgtgtgtgtgtgtgtgagacatagACTGTATTCtgtaagtgtgtgcatgtgtgtcttgACTCATAGGCCTGTACTACAATCTTAGCATCAATTCCTATTtccacatgtattttttttttttaaagatggagTCAAACTCACACTATTTTGATTCAAAATCTGCAgcatctgttttaaaaaaagaaaacaaacattatatatatatacataaaggaTCACACAGCAAAGAAGAGCTGAAAAACAATGCAAGTTTTGTGTTTCACTGTAGGAATAATGTACAGACGTTAACATGGACATAAAGTTGTTTTGTAATATACTGGGAAAATAGAAACATCACATGATTAATTATAAAGCAAGTGAATTGTCAGTAAAAGCATTTCTGAAGCATTTAACTCGTCTGTATTCAGCAGTATGAGCAGCTTTTTTATGGAAGAACTTCAATTTAACTAGGTTTTAAATCCACATTTCTATCCATCACTGACTGTTGAtgcttttcttattatttgtaTTGAGTTGCTGTGGTTTCCATCacctacactgtgtgtttattgggaGTCTGTCTGTAGAAGGCAGAAAGTTCTGGATGTGAAAAGggaaaattttatttaagtttacttttagcattttattgtttgCACTTTAGATGTACTTTGAACAGCATTACTCTGAATGAAACTatattaatctgaatttgattaCACCTGCGAAAGAAATGACACAACGTCTCATCAAATCATTTCTGTGCACAGTCAGACATGCCTCCTTGCCAACCAATCAGCATTTGCCAGGCATAGCATCAAAGACACGCTAAACACGTAGTTAGCTTGTGGATGTTAGTTAGAAACAGAaagtctctgtgtctctgcatgCCATATTTACCCATGATCCCCCTCTCTGTCTGCCTTGAAGGGGAGTATTCACATCTCAGCTCCAGGGCATCACTTTACAGTCTGACAGATTAGCTTTGTGACGAAAACCATTTATACTCACTGTGGTTGTAATTTATTTCTAAACTTTCTTTCAtgatttttgtataacagtTCTGATAAACGAGTCGTTTTTGACTCAGCCATTGTTGTTGTAGTGGAAGTAAAGTTACCCTGTGAAGAACACCTCTGTCAGGAAATATGAAAAGATCccaatatttctgttttacacTCTTCAGCAAATGTATAATGTCTTTCCTAACTCTGATCTGTGACATGATGTTTTCAGTGCTagtaaataacaataaaatatgtaagAATGTTCTTTATAAAGCAAACATAAATTAAAGGATTTCATCTTA

Function

NR:

description
PREDICTED: protein NLRC3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927595.2 True 4612 mRNA 0.41 13 2019857 2033455

Neighbor

gene id symbol gene type direction distance location
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding downstream 27370 1987373 ~ 1992487 (-)
myo5aa myo5a,myo5aa coding downstream 35524 1906518 ~ 1984333 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding downstream 115446 1881831 ~ 1904411 (-)
bcl2l10 NA coding downstream 143812 1864583 ~ 1876045 (-)
slc24a5 slc24a5,LOC108412301 coding downstream 433487 1566571 ~ 1586370 (-)
rab27a rab27a,LOC106562223,LOC106587426 coding upstream 566086 2599541 ~ 2623825 (-)
ccpg1 ccpg1 coding upstream 606409 2639864 ~ 2656507 (-)
dnaaf4 dyx1c1 coding upstream 626248 2659703 ~ 2670869 (-)
pygo1 pygo1 coding upstream 637495 2670950 ~ 2674690 (-)
prtga prtg coding upstream 647825 2681280 ~ 2722022 (-)
LOC117597531 NA non-coding downstream 139284 1876965 ~ 1880573 (-)
G92592 NA non-coding downstream 157443 1861949 ~ 1862414 (-)
G92576 NA non-coding downstream 159986 1859594 ~ 1859871 (-)
G92560 NA non-coding downstream 178635 1840259 ~ 1841222 (-)
G92540 NA non-coding downstream 216054 1803578 ~ 1803803 (-)
LOC117597579 NA non-coding upstream 138419 2171874 ~ 2173454 (-)
G92763 NA non-coding upstream 190729 2224184 ~ 2224457 (-)
LOC117597578 NA non-coding upstream 206983 2240438 ~ 2260923 (-)
G92782 NA non-coding upstream 268651 2302106 ~ 2302430 (-)
G93023 NA non-coding upstream 554131 2587586 ~ 2606378 (-)
LOC113534649 LOC108264477 other downstream 4892 1995031 ~ 2014965 (-)
G92531 NA other downstream 251062 1768405 ~ 1768795 (-)
sema6dl sema6d other downstream 371571 1611811 ~ 1648286 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other downstream 488795 1515738 ~ 1531062 (-)
bloc1s6 bloc1s6 other downstream 727364 1197135 ~ 1292493 (-)
fam214a fam214a other upstream 2486 2035941 ~ 2130790 (-)
onecut1 onecut1 other upstream 58279 2091734 ~ 2109935 (-)
G93046 NA other upstream 715933 2749388 ~ 2751169 (-)
G93047 NA other upstream 726157 2759612 ~ 2768298 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other upstream 1392263 3425718 ~ 3548751 (-)

Expression


Co-expression Network