LOC113534665


Basic Information

Item Value
gene id LOC113534665
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 140270 ~ 141515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927617.2
tttatacacacatacacacgatcGCTCATCACCAGTCTCACTGATTCCTCTCTGCTGTTACTCTCATTGACCAGAACCATGAGCAGGAATTTCTTGTCCATGAACGATGAGCTCCATAAGGGAGACTTCCTGTTATCCAACAACCAAGAGTACAAGGCAATCTTTCAGGAGGATGGGAACTTCGTGGTCTACGGCTGGAGACCTCTGTGGGCATCTGACACTTATGGCAATACCAGCGCCCAACGGCTGATCATGCAAGAAGACTGCAACCTCGTCATGTACACACCAGACAAACCCGTGTGGGCCACCAACACCAACTGCTCGAGTGTCAAAAGGTGCCGTTTGACTCTGGGTAACAACGGCATTCTGGTTGTCGAGAATGATGGCATTGTGGTGTGGAAATCCACcaagaaaaattaaaagtaatgaAGCAATCCTGTCTGAAAACTCTCCCAGCTTCATTTCTGTCTGTAAAGTCAATAAATCAGTAAAGAGCATCAGCTGga

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005516 calmodulin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927617.2 True 506 mRNA 0.47 3 140270 141515

Neighbor

gene id symbol gene type direction distance location
scg3 scg3,LOC107700587,LOC107550625,LOC107588544 coding downstream 3807 116563 ~ 136463 (-)
leo1 leo1,LOC102793363 coding downstream 79909 51413 ~ 60361 (-)
LOC113534766 mapk6,LOC107747613,LOC107550634,LOC107704268,LOC107700590,LOC107588533 coding downstream 120701 6409 ~ 19569 (-)
LOC117597506 NA coding upstream 12552 154067 ~ 155144 (-)
LOC117597586 NA coding upstream 35598 177113 ~ 177644 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding upstream 57458 198973 ~ 223384 (-)
LOC113534440 LOC108264511 coding upstream 97162 238677 ~ 247310 (-)
LOC113534387 NA coding upstream 381939 523454 ~ 660554 (-)
G91764 NA non-coding downstream 54725 84295 ~ 85545 (-)
G91752 NA non-coding downstream 76996 53728 ~ 63274 (-)
G91786 LOC108237865,LOC106563385,LOC106560410,LOC106599233,LOC106566551,LOC106561221,LOC106564134,LOC106572279 non-coding upstream 42019 183534 ~ 183796 (-)
G91873 NA non-coding upstream 157032 298547 ~ 299097 (-)
G92197 NA non-coding upstream 251517 393032 ~ 395264 (-)
LOC117597554 NA non-coding upstream 348047 489562 ~ 490796 (-)
G92220 NA non-coding upstream 462535 604050 ~ 606076 (-)
LOC113534658 NA other upstream 1910 143425 ~ 144961 (-)
dmxl2 dmxl2 other upstream 124692 266207 ~ 323940 (-)
G92240 NA other upstream 565235 706750 ~ 747530 (-)
usp8 LOC107665382,LOC107595392 other upstream 641395 782910 ~ 802212 (-)
slc27a2a LOC108264486 other upstream 693601 835116 ~ 846935 (-)

Expression


Co-expression Network