LOC113534721 (LOC108264207,LOC108264093,LOC108264205,LOC108264095,LOC108264099,LOC108264096,LOC108264094,LOC108264212,LOC108264097,LOC108264203)


Basic Information

Item Value
gene id LOC113534721
gene name LOC108264207,LOC108264093,LOC108264205,LOC108264095,LOC108264099,LOC108264096,LOC108264094,LOC108264212,LOC108264097,LOC108264203
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4597574 ~ 4602961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927677.2
ATGTTGATTCTATCAGACAACTCAAAACATCTGGCAATTATAAAGGTGACTGTACCCTGGATAGACCACATTGAGGAGGTCAATGAGAAGAAGTGTGCCAAATATCAGGAGCATATAGAAGATCTGGCAAAAGGGGAAAATTGCCATATTTTGGACAGCCCAGCATATCCTCTGCTGTCTAAAGATGGAGATGTGATAATTGGAGGTTTATTTTCAATACATGGTGATATAAAGCTTCTGTCACTGCCATATACTGAAAAACCTGAACCTTTAATCTGCACTAGCTTTAACCTTAGGGAATTTCGATTTGCTCAGACCATGACTTTTGTAATTGAGGAAATCAACAGGAGCAGCAGCTTGCTCCCAAATATCTCAATTGGTTACAGGATTTATGACAATTGTGGCTCAAGATTATTATCTATGAAAGCATCCATGGCTTTGATGAATGGTCAGGACATAACAGTAGATGATGCCTGCTCTGGACAAGCAGTAGTACAAGCCATCATAGGGGAGTCAGAGTCTTCTCCTACTATAGTACTCACAAAAACTACAGGGCCTTTTAACATCCCAGTGATAAGTCACGCTGCCACATGTGAATGTTTGAGCAACAGAAAAGACTATCCCTCGTTCTTCAGGACCATAGCAAGTGACTACTACCAGAGTAGAGCACTGGCATATTTGGTCAAGCACTTTGGCTGGTCTTGGGTGGGAGCTGTGAACAGTGATAATGATTACGGCAACAATGGAATGGCCATTTTTCTGAATGCAGCCAAAGAGGAGGGAATATGTGTTGAGTACTCTGAGAAGTTTGATCGGTCAGATCCTGCCAAATTAATGAAAGTGGTAGACGTTATTAAGAAAGGCACAGCCAAAGTAATCATTGTATTTCTTGGCCATGTTGAGATGAATGTTCTAGTAGAAGAACTTATTCTGAGGAATGTCACTGGCTACCAACTGATTGGTGTTGAGGCATGGATTACTGCAGTCAATCTAGTAACACCAACAAGTTACAATGTACTGATTGGATCCATGGGATTCGATGTGGGAAAATTGAACATTGGTGGTTTTGCTGACTACGTTATTAGAGAGTTTTGGCAAACGGATTTCCCTTGCTTGAATACAGAGGGAAACATTTCTCAAACTGAATACAACTGCAGCAGATATGAGGAAATCATTCCCTTTAAAAACTACAATGAAGATATATCAGAATTGAGATATGCCAATAACATCTACAGTGCAATTTATGCTGTGGCACATTCTCTACACAGCCTGTTGAGATGCACAGAAATCAAGAACTGTGAGAAAGGCAAGACAATACAATCATGGCAgGTTGTTGAGTCACTGAAAAAAGTCAATTTTACAACCAAAGCAGGAGAACAGGTTTGGTTTGACAGCACTGGGGCAACAGCTGCAAAATATGATGTAGTGAACTGGCAACGAGGCTTTAATGGAGAAATGCAGTTTAAGGTTGTGGGGTATTACGACGCCTCTCTGCCGAGTGGAAAGCAGTTTGTCTTAAATGCTAACAGTATAAGTTGGGCTGGAGGGAAATCAGAGCCAAGGTCTATGTGCAGTGAGAGCTGTCCTCCAGGTACCAGAAAAGCTGCACAGAAAGGAAGGCCTGTCTGCTGCTATGACTGTATACCATGTGCAGAGGGAGAGATCAGTAACCAGACAGATTCAAATAACTGCGAGCAGTGTCCAGGAGAATATTGGTCTAATGCTgacagaaataaatgtgtgttaaaagtCATAGAGTTTCTTTCATTTACAGAAGTTTTGGGGATAGTACTGGTACTTTTTTCCTTGTTTGGAGCTACATTAACTGTGCTGGtagctgttttatttctaataaaaaaagacactcCTATCGTTAAGGCCAACAACTCTGAACTGAGCTTCCTGCTGCTGTTCTCCCTGactctgtgttttctctgttcACTAACTTTCATTGGACGGCCTTCTAAGTGGTCTTGTATGTTGCGACACACAGCATTTGGGATCACCTTTGTCCTCTGTATCTCTTGTGTTCTGGGGAAAACAGTAGTTGTGTTAATGGCTTTCAGGGCTACACTTCCAGGCAGTAATGTCATGAAATGGTTTGGGCCTCtacagcagagactcagtgTACTTGCCTTCACTCTCATACAGGTCCTTATTTGTgtactttggttaacagtttcgcCTCCTTTCCCCTATAAGAACATGAACTACTTCAAGGAAAAGATCATATTAGAATGCAACTTGGGCTCAGCTATAGGTTTCTGGGCTGTGCTGGGTTATATAGGAGTTCTTGCTTTCTTGTGCTTTGTTTTGGCTTTTCTCGCCAGAAAGTTGCCAGATAATTTTAATGAAGCTAAATTCATCACATTCAGCATACTCATATTCTGTGCTGTGTGGATAACCTTTATTCCAGCTTATGTTAGCTCTCCTGGAAAATTTACTGTAGCTGTGGAGATATTTGCTATTTTGGCCTCCAGTTTTGCTCTATTATTCTGTATATTCATACCTAAATGTTATATTATTCTGTTTAAACCTGAGCTAAACACAAAGAAATGTGTAATAGGAAAAATGGCATCtaaatcactttaa

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927677.2 True 2592 mRNA 0.41 7 4597574 4602961

Neighbor

gene id symbol gene type direction distance location
LOC113534722 LOC108264093,LOC108264207,LOC108264095,LOC108264205,LOC108264099,LOC108264096,LOC108264094,LOC108264212,LOC108264097,LOC108434099 coding downstream 3539 4589186 ~ 4594035 (-)
LOC117597542 LOC108264205,LOC108264203,LOC108264208,LOC108264204,LOC108264207,LOC108264095,LOC108264093,LOC108264094,LOC108264097,LOC108264096 coding downstream 20002 4569303 ~ 4577572 (-)
LOC113534723 LOC108264099,LOC108264095,LOC108264205,LOC108264096,LOC108264212,LOC108264097,LOC108264093,LOC108264094,LOC108264203,LOC108264204 coding downstream 35252 4558097 ~ 4562322 (-)
LOC113534724 LOC108264203,LOC108264204,LOC108264095,LOC108264099,LOC108264208,LOC108264205,LOC108264096,LOC108264097,LOC108264207,LOC108264212 coding downstream 40461 4552139 ~ 4557113 (-)
LOC113534725 LOC108264094,LOC108264095,LOC108264099,LOC108264208,LOC108264205,LOC108264093,LOC108264096,LOC108264097,LOC108264212,LOC108264207 coding downstream 55806 4537081 ~ 4541768 (-)
LOC113534774 LOC108263974,LOC108263992,LOC108434102,LOC108437989 coding upstream 27891 4630852 ~ 4634757 (-)
LOC113534432 mme,LOC107548962,LOC107695447 coding upstream 39300 4642261 ~ 4677360 (-)
LOC113534715 arhgef26,LOC102799329 coding upstream 182236 4785197 ~ 4841034 (-)
LOC113534489 rap2b coding upstream 325379 4928340 ~ 4930720 (-)
p2ry1 p2ry1,LOC102799884 coding upstream 370047 4973008 ~ 4976264 (-)
G93753 NA non-coding downstream 50869 4546439 ~ 4546705 (-)
LOC117597614 NA non-coding downstream 365743 4231460 ~ 4231831 (-)
G93716 NA non-coding downstream 413581 4183755 ~ 4183993 (-)
G93710 NA non-coding downstream 425262 4172073 ~ 4172312 (-)
G93707 NA non-coding downstream 442077 4155257 ~ 4155497 (-)
G93896 NA non-coding upstream 180964 4783925 ~ 4785131 (-)
G93926 NA non-coding upstream 290625 4893586 ~ 4894074 (-)
LOC117597587 NA non-coding upstream 363673 4966634 ~ 4971603 (-)
G93988 NA non-coding upstream 404464 5007425 ~ 5011433 (-)
G94010 NA non-coding upstream 473179 5076140 ~ 5179801 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 376967 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 423980 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 524041 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 1048823 3425718 ~ 3548751 (-)
G93047 NA other downstream 1829276 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 1036735 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1110882 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1594282 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2543539 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2835130 7438091 ~ 7694427 (-)

Expression


Co-expression Network