LOC113534739 (LOC108264121,LOC108264117)


Basic Information

Item Value
gene id LOC113534739
gene name LOC108264121,LOC108264117
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4123822 ~ 4126781 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927693.2
ATGTTTAAGGAAGGGGACATTATGATAGGTGGAATTTTTCCTATATTTAACAAACAGGAGAATATTCTTGCTTCATTTGAAAACAAACCACCTAAAGCTGAATGTAAAggATTTGACTTACGAGCATTTCGCTGGACTAGAACCATGATGTTTGCAATAGATGAAATAAATAGAGATGATAATTTGCTTCCTAACATCACTCTAGGGTATAAAATTTTAGACTCTTGTGCCTCTCCTACCAATGTTTTGCGAGCTGCCCTCACTCTGGCGAGCATgtcagagaaaaataaatctttctCTCAATGTTATCCACCTCCCCTATCAGCTATTGTAGCTGAATCAGGATCTACCCAGTCATTAGTTGTGGCTGGGGCACTTGGACCATTCAGAGTACCAATGGTGAGTTACTTTTCAACATGTGAATGTTTaagtgacaaaaataaatatcccACATTTTTCCGAACAATACCAAGTGACTATTACCAGGCAAAGGCTTTGGCTTTCCTTGTCAAAAGGTTTGGATGGACATGGATTGGAGTTTTACAGTCTGACAATGATTATGGACGAAATGGGATATCAGCATTCACAAAAGAAGTGCAGGCATTTGGTGTATGCATTTCATTTGTTGGCACAATTCTGCGGACATATCCCCAAAGTAAAATCCTTGAAATTGTTGAACTGATAAAACAATCAACCGTCAAAGTCATCCTTGCATTTGTGCCAGAGGGAGATCTCTACCCTTTAATGAAAGAAGtggtaaaacaaaacattatagGAATACAGTGGATTGCAAGCGAAGCCTGGATAACTGCAGACAGACCATCCACTCCAGAAATGTTCAAATCTTTTGGAGGAACAATAGGATTTGTGGTCCGAAAGATGGCCATGCCCAAACTGGGACCAGTTCTCAAGCATATCAGCCCTTATTATGAATCAGAGTCTAGTTTTGTCAGTGATTTCTGGGAAACAATTGTAAGTGAGCAGttgaaaaaagtacattttgtgGACGCATTTGGAGAGGCAGTGTTCTTTGACAAGAATGGAGACCCCCCTGCCTCATATGAAGTAATAAACTGGCAGCTGAAAGAAGGACAAACACCAAAAGCTGTTTGCTCAGAAATCTGTCCACAAGGCACAAGGAAAGCACAAATCAAAGGATTGCCTCTATGCTGTTTTGACTGTATCCCATGCACTGATGGATCTATATCAAATACAACAGCAGATTGCATCACCTGCCCTGAAGAGTACTGGTctaatgaaagaaaagacagcTGCATCATGAAAACAACAGAGTTTCTTTCATACATTGAAACAATGGGGATTGTTCTAATATCCTTGTCACTATTTGGTGCTTGTTTAGCATTTTCTACTATGGtgattttcatatatttcagaGACACGCCAATAGTAAAAGCAAATAATTCAGAGCTGAGCTTACTTTTACTTCTTTCTCTTATATTTTGCTTCCTCTGTCCTCTCACATTCATTGGCAAGCCCACAGTTTGGTCCTGCATGTTGCGTCATATAGCATTTGGTATCACCTTTGCTCTTTGCATTTCCTGTATCTTGGGAAAAACCATAGTTGTGGTAACTGCCTTCAGAGCAACACTACCTGGGAAAAATCTTGCAGGAAATTTTGGGCCACTTCAACAAAGGGCCATTGTGTCTTCATCCACTGTAGTTCAAATagttatttgtattatttggcTAAATGTTGCACCACCATTCCCTGATAAAGTCTTTGAGCaacagagtaaaaaaataatcttagaATGTAACACAGGCTCAGATGCTGCATTTTATGCAGTTCTAGGATACATTGGTCTTCTTGCTGTTATTTGCTTGGTCCTAGCCTTTTTAGCCAGAAAGCTACCTGATAATTTTAATGAAGCCAAATTCATCACATTTAGTATGCTTATATTCTGTGCGGTTTGGATCACCTTTATTCCAGCTTATGTCAGCTCTCCTGGAAAGTATACAGTAGCTGTAGAAATATTTGCAATTTTATCATCTGCCTTTGGCCTACTCTTATGCATTTTTGCACCAAAGTgttacatcattttaatcaaaccagagagaaacacaagaaAACATGTAATgggaaaaaatccaaaagttACTTAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927693.2 True 2124 mRNA 0.39 6 4123822 4126781

Neighbor

gene id symbol gene type direction distance location
LOC113534596 LOC108264119,LOC107707879,LOC107557164 coding downstream 10899 4109671 ~ 4112923 (-)
LOC113534597 LOC108263925,LOC108434083,LOC105904798 coding downstream 14763 4105227 ~ 4109059 (-)
LOC113534741 LOC108263925,LOC108434083,LOC107730035 coding downstream 23767 4093602 ~ 4100055 (-)
LOC113534742 LOC108264121,LOC108264120,LOC108264117,LOC108434033 coding downstream 31163 4085122 ~ 4092659 (-)
LOC117597565 NA coding downstream 45360 4076658 ~ 4078462 (-)
LOC117597529 NA coding upstream 4484 4131265 ~ 4134060 (-)
LOC113534615 LOC108264116,LOC108434034,LOC108264184,LOC108264127,LOC108264128,LOC108264136,LOC108264183 coding upstream 10379 4137160 ~ 4140602 (-)
LOC113534616 LOC108264115,LOC108434087 coding upstream 16450 4143231 ~ 4149410 (-)
LOC113534737 LOC108264111,LOC108264124,LOC108434067,LOC108434036,LOC108264109,LOC108434043,LOC103037408,LOC108264189 coding upstream 64904 4191685 ~ 4195052 (-)
LOC117597613 NA coding upstream 99450 4226231 ~ 4231317 (-)
LOC113534402 NA non-coding downstream 177446 3944987 ~ 3946376 (-)
G93639 NA non-coding downstream 388430 3735097 ~ 3735392 (-)
G93557 NA non-coding downstream 542616 3579017 ~ 3581206 (-)
G93505 NA non-coding downstream 669451 3425023 ~ 3454371 (-)
LOC117597513 NA non-coding downstream 701664 3406145 ~ 3422158 (-)
G93707 NA non-coding upstream 28476 4155257 ~ 4155497 (-)
G93710 NA non-coding upstream 45292 4172073 ~ 4172312 (-)
G93716 NA non-coding upstream 56974 4183755 ~ 4183993 (-)
LOC117597614 NA non-coding upstream 104679 4231460 ~ 4231831 (-)
G93753 NA non-coding upstream 419658 4546439 ~ 4546705 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 50289 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 575071 3425718 ~ 3548751 (-)
G93047 NA other downstream 1355524 2759612 ~ 2768298 (-)
G93046 NA other downstream 1372653 2749388 ~ 2751169 (-)
onecut1 onecut1 other downstream 2013887 2091734 ~ 2109935 (-)
G93711 LOC101487076 other upstream 46507 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 90237 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 1512915 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1587062 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 2070462 6197243 ~ 6281530 (-)

Expression


Co-expression Network