LOC113534754 (LOC108264847)


Basic Information

Item Value
gene id LOC113534754
gene name LOC108264847
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6031416 ~ 6042803 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927705.2
TCAGTCGCGCTGGATTGTTATACATATTCATGACTGCAGCAGGAGTTCACATCCAATAGCAGGCGACCTGAGATGAATATTCAACAGATCCGTCGACGGAGAGCGTCGGCTTCAGTGTGCATCTGGATGAGAGGCGTGAGAGCGGCGTTAAGTGCGAGCTCACGTGGAGAAACGCTGCTGAAACTAAACAGCACGCTTTGGGTGGTCGGTTTAGAGGAGGAGAAATGCGAGGATAAGGAGCGGAATGCGCTTTTCTGGCGTTTTGCTGAGGCGTTTCACACGAGCCGGCTGATTTACAGCGTTCTGTTGAGTGAGGAAAGCACTCCCGTCTCCTCATCCTCATGCACCGCGGAATTTCTCTCCACATGACAAGCCGCAGTAAGGGGCTCCTGGAGGACATCGTGTCCAGCCTGTGGGAGCTGGAGAGCGCCAGACAGAGGCAGGAGAGACTCGTGCTGGGCGTCCTGGCAGCCGGAGACACCGAGAAGGAGCACGAGACTCTGAAATGGCAGCAGAAGCAGCTCCTGGATGCCCCTGGTGGTCTGATGGTGGTACTGCAGCAGCAGCTCAGCGAGTTGACGGTGGACTCTAACACAGAAGACAACCTGGACAGTGTGTCTAGCTCAGGTTTTTACGAGCAGAGTGAGATTCAGTCCCCTTTAAGACACTCAAGATCTTCTCCCAGTCTTTCTTTCTACAGCCGCAGAGGCAGACCAGTGGAAGATGCCTACATGCTGGACTGGGAGGGTCAGAGGGCACGACCCTTGCGTGCTTTTCTGCCTCGTTCATTCTCTGCCCCCTACCCCCCTTTAGAGGGCATTGCAGAAGGAATTGAGGATGCCGAGGATGATGACAATGGAACTCTGTGGTCAAAAGGCCAAACTCCAAATGGAGAGGACGTGAATGGAACTGATATGGGTACCATTACGAATTTAAATGAGGATGGTGGCCACACTGGGATCCATTGTGATTATCAAGGTCCCACTGTGGAGGTGGATGAGGGCCCCACAGCAGAGGACATTCAGCAAGCAATGCGTGTGGAGACCTATATTTTGGGTCTTCTACAACGCTATTGCCTCAACCAAACTCCAACCTCTACAGAAGTCCTCAGTTCTACTCCTGATTGCTGGCAAGAACTGCATGCTTTCCCCCCCAACTACTGTGAACAACCTGAAAATTCAGAGTGGCAGCAATGGGAACTCATCAATGATGAAAAAGCATCGCAAGATAGATACTATCTGGGAAGTGAGGCTAATCGATTCTCACAGGCTTGTAAAGATCCAGGCTCCTCCATAGAGTCATCCACTATCATTGCTGATATAGAGTCACATTGTCTTCATCATCCCTGTGTTTCTCCATCTTTAACTGAATCTCCCAAACAAGACTGGGAGCCTACATCTCTGGAactggcacatcaactgccctTAGCCAGACTGTATCAGGAGGAAAGCTGGTCATCAGTTAGGCAGAGGCATGTAAAGACAACCAGCCAGTCACTATCAGAAGGAAACTTTCAATCCCAAGGTTTTACCACCAAACCAGAGCATGGATACCATTCACTGGGGCGGGATATGGATATGCACTGCTTCAATGAAGATTATATGTCCAGTCAGAGACTCTGGAGCTCCACGGCAGACCTCAATCAAGAAGAGAAGGTGACGTTGCTCAGAGCAGAGGAACGACTGTTGAGAGACACACACCTACCATTTCACATCAGCCCACAGTCTTGTACTAAGTACACTGAGCAGGGCCATCACATTGGGAATGAGACGAATACTAGAGGAACTCAAGGAGATGGATCTGACTCCAGTCTGAGTGAGACATGCTCTCCAGGGTCCAGCTCAAGGTCAAGTGACTCAGATGAAAGTGGGGGCCTTGTCTGGCCACAGCAAGTGCCCCCATGTGTGCCTTCTTTCTCCCAGAATACACCTACTGCCATGGTCAGGATCAAAGCCTCGCATGCACTAAAGAGGAAGATCCTGCGTTTCCGGTCAGGCTCGCTAAAGGTCATGACCACAGTCTAGTCTTGGATGTGGCATTTGAGATTAATTTGGTATATGCTGTGCTTCCAGCCTTTGATGGTGTATGGTGTTAGTAAGTGGAATCCATGCACCCAAAGTTGGATTCAATATATGTCCAAATTCAGTATGACCTAGTTGAATGTTATGGAATCCTCTGTACAATTTACAAAGCTggctatgtatgtatgtatgtatgtatacacctTTGGTTCTCTGGGTGAGAGATTTGAATACTGTTCTCAACATGCTTTTAACCTTTGCCTTTTGTTCTCAGTGATCAAGACCAATCTGATATTCCTGATTTGTGGATTTCGCTGTCCTGGGTATCACTATACAGCAGCAGATATTTTGCCACTATGTCATGTCTGAATGCATTTCCTATGGATATTCCAGTTTTCTTTTCCCTTCTAAAACATGCTGGTTGGTGGATTGTCTCTTTGCCATGGACTAGCATaccatctagggtgtattcttaccttgtgcccagtgttcttgggatatGAGCTACACTAACCACAaccctgtccaggataaagtgaCTGAAGACAAATGAATAAGAATCACCAATCCTAAGATGGGCTTGACATTGATAGATACCACATTGCACCTTAGAAACATTTCTCTTGATAGTGCTGACCTGTGATGGTTGCTAACGACACAGTGCCTCTCTTTGGTGCATATCCTGGATATAATAACTGCAGGAAGCAAGAAGGATTTTATGTCTTCTAGAAAGTTCTTTAGACTCAGACTTACTTTCACGCATTTCCTATGAAGTGCCTGAAGTGGGCTATAGCAGGTGATTAACCACCCGCTCTACTTTTCCCCCCaagttgtctttttttgtgCTGTTCAACTTTGTAACACTAAGTCAAGTTAATTAAGAATGTTTCTTCTTATAATCTACTTTTTACAGAATGTAATGACGATCCTTTGACAAGCCATATGCAGTTTATTATAGTGAGATCTCCTAACAAAAATATCAAGTAGGTTTATTGTGAATCTCACACAGACATGGATTTACTTGctgaatttgttttaaatcttaCAACCTTCCAACACATCTGTATAGGTGTCTTGTGGTTTCAAAAGAGCAATGCCAGAagcctttttttcctgttgtcaTGCCCTGTGTTGAAACACCATCTGAACACCCTGATATAATCACAATCTGCAGGATCCAGGTCAAGGTCATGTGACTCAGATGAAAGTGAGAGTCTTGTCTGGCCTCAGCAAGTACCCcatgtttgctttctttctcacagaatgcaaatttattatttttgtgctCTTGACAAAACTTGACAGCAGAAAGTCTTTGTGGTATAAACACCAGTGAGAAATCATGCTTTTATGAAATTATCTGGAGTTGCTCTTTAAGTATGAGTTCGATGCCACCCAGTGTACCAGTTGAATGTGAGTTGTTTCTGACTTGTGATAGCACTGCCAACCTCGATGTGAGAAATAGCCATTCCGACAGCTGTAAAAATCTGTACATTAATGAATGCTTAAATAACTATTTCTGTGAATGCACGCTTTTGCAAAGTCTTGTACATAATGAAGTATTATCTTGCCTGCTGTTTTTACGCCAGCGTCTTTGCGTTTAGACGCACCTTTTTTAGTATTTGGAAAAACTTTCTTTTCTGATTCCCTTTTACTGCATGATGATAATAAACCTTTTATATTAACAGCTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC108264847

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927705.2 True 3712 mRNA 0.45 4 6031416 6042803

Neighbor

gene id symbol gene type direction distance location
chst8 LOC108264863,LOC108264314 coding downstream 103118 5924531 ~ 5928298 (-)
LOC117597570 NA coding downstream 221899 5807422 ~ 5809517 (-)
LOC113534712 NA coding downstream 224234 5805677 ~ 5807182 (-)
LOC113534713 NA coding downstream 235360 5792221 ~ 5796056 (-)
lsm14ab lsm14a coding downstream 373311 5644816 ~ 5658105 (-)
gramd1bb gramd1b,gramd1bb,LOC108264679,LOC107717608,LOC107670606,LOC107733299 coding upstream 5673 6048476 ~ 6171119 (-)
trnam-cau_19 NA coding upstream 151272 6194075 ~ 6194147 (-)
kirrel3b LOC108264823,LOC108434141,LOC103024239 coding upstream 434149 6476952 ~ 6680208 (-)
trnap-agg NA coding upstream 822465 6865268 ~ 6865339 (-)
ets1 ets1,LOC106581098,LOC106612966 coding upstream 950333 6993136 ~ 7035230 (-)
G94608 NA non-coding downstream 741 6029309 ~ 6030675 (-)
G94607 NA non-coding downstream 2181 6025360 ~ 6029235 (-)
LOC117597596 NA non-coding downstream 117823 5911768 ~ 5913593 (-)
G94441 NA non-coding downstream 327625 5703581 ~ 5703791 (-)
G94325 NA non-coding downstream 469010 5560555 ~ 5562406 (-)
G94728 NA non-coding upstream 188053 6230856 ~ 6231165 (-)
G94730 NA non-coding upstream 190202 6233005 ~ 6233239 (-)
G94732 NA non-coding upstream 195878 6238681 ~ 6239748 (-)
G94733 NA non-coding upstream 197398 6240201 ~ 6240526 (-)
G94734 NA non-coding upstream 197814 6240617 ~ 6242160 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 244985 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 388467 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 1810809 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 1857822 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1957883 4070800 ~ 4073533 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 154440 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 1103697 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 1395288 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 2353009 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 3131852 9174655 ~ 9215815 (-)

Expression


Co-expression Network