larp6a (larp6,LOC107665376)


Basic Information

Item Value
gene id larp6a
gene name larp6,LOC107665376
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5409567 ~ 5414923 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927723.2
aaaaagagcaaagaaaagaaatcctacagtaacaataataacaatagcgATGCAGGTTTTAGTGAACGCCTTCTTGCGTTTTCTCTCCTTCCTGCTTCCTCCTTCTTGGCTCCAGCTCGCATTTCGGTGGTGGGTTGGGGGAGATGAGTGCGGAGGCTCTCCGTGGCCCAATCGTGGCGCTCCTTTCGCGCGCAGAAAGCCTCTTATTGAACACGAGGAAGTGACAGCGCGAGGCGACTCCCATCCTCGCGGTCGCGTCTCGCTCGCCGCTGCTCCTGCGCCCTCCGCCGCTGCCAccgctcctcctcctgctgctccgGTGGACGGCCCGGGGTTTCCGTGGCGCCGAATCCGGGAAGCCGCGGGGCTCGTCTTGGCGGCTCCGGTCGTCATTTCCGAGCGCCGGTGCCGAGAAGCGCGAAGCTCGCTTTCGCCGTGCGATCATCCGGGAGGCGTCACCGAGGACACAGAAGCACCGTGTAGAGCGCGCTGGTCCGCTACGGTCATGAGCGCGGCTACGGAGCTGCCGAACTCGGTGGAGGTCGTGGGCGCCGCCGCCGCCACCGCGGGCTTCCCGGACCAACGCCTGCGCGAGATGGGGACTCCGGTTACCATAACCGTGGCTATCCAGGCGGCGGAGGACGAGGAGCCCGACGAAGAGGAAACGATCAACAGTGAAGACGAAATTGTGAGGCACGAGAAATCGagcGGCGCTGGCACGAGTGGTGgagagctggaggaggagagCTGGCAGCCCCCAGACCCTGAACTGACCCAGAAGCTCATAGCTCAGATCGAGTACTACCTGTCTGATGAGAACCTGGAGCACGACGCCTTCCTGCTCAAGCACGTCCGGCGCAATAAGCTCGGCTTTGTCAGCGTCAAGTTGCTTACGTCTTTCAAGAAGGTAAAGCACTTGACAAGGGACTGGAGGACGACAGCATACGCGCTACGCCATTCCACCCTGTTGGAGTTGAACGAAGAAGGTCGGAAAGTTCGCCGCAGGACGAGCGTGCCGGTGTTTGCCAGTGAGTCTCTGCCGAGCCGCATGCTGCTCCTGAGTGAGCTGCAGCGCTGGCCTGAACTAGGTGTGGCTTTGGCAGGTGGGGGTGGGGCTGGGGACGGGAGCCCTGGGGCGAACCCAGCCCAGCAGGAGCGGCTCATGGAGCTTCTGCTCAAGGCCTTTGGTGCATATGGCCCGATTGCCTCGGTGCGTGTGCTGAAGCCTGGCAAAGACCTGCCACCTGATCTAAAGAAGCTGAGTGGGCGCTACTCGCAGCTGGGCACTGAGGAGTGTGCTATTGTTGAGTTTGAGGAGGTGGAGGCGGCTGTGAGGGCCCATGAGGCCTACACAGGCCAGCAGGGAGACGGGAAGGGCTCGATGGGGCTTAGGGTGGTGCTGATTGGCACCAAGCCACCTAAAAAGAAGGTGCCCAAGGAGAGGCAGCGGGAGGAGAACGGAAATGCGGGAGGAGGAGGAATGCGCAAGAGCCGCTCGCTGAACAGCCGTGTGCGTGAGCTTCAGTATCATGGAGACGACTCTGCCTGCAGCTCCTCTGAAACGGAGAGCAACCCGACCTCGCCTCGCCTCGGCCGCAAGTCACGTTCATGCAACAAGCTGAGTCCTGGCGGCTTCCACTTAAGCCCGGCCGTGTCTCCCCGCACCAGCCCATGGAACAGCCCACGAGCCAGCCCTTGTGCTCAACGCAAAGCCCCTCCTACTATCCGCTCACCCCTGGCCAGTGAGGGCAGGTTGAGCCCTGAGGCTGGGCGACGCTGGGCTGATTATTCCTCGGACAGCAGCTTGACTCCTTCAGGAAGCCCATGGGTGCAGCGCAGGAAGCAGGTGGCCAGTCAGGAGAGCAGCCCAGTGGGGAGCCCGATGCTGGGCAGAAAGATCCAGAACGCAGACGGCCTTCCCCCTGGCGTTGTGCGCCTGCCCAGGGGTCCGGATGGCACGCGTGGGTTTCACGCAGTCTTGGTGGCAGAACGGGGCAAAACTGCAGCCACTCAAACCTGACTTGAACCAGGGGGAGCCTCACGTCTCCTAAAACGGCAGCACTGAACTATAGCAGTGAGGTTTATGCATCGTACACCACACTGTCGACATGAAGTGTCATTCTGCAAAAATGGACCACTGATCTGTTGCACATCactgtctgtttatttgtctTTGTAATACCTTTTTTATATggatatttcttttgtttttgttttatatggaCATTATAATCAGACTTGGTTTGGTATTACAAGAAAGGGATGAGTGCAAATGTCAATCACTCCATACTggataaaataatgtttatttttgtgtgttgatGTGGACAGTGGTTTAGGCATGTGGATTTGATCACTTAATGCCTTGTTGCACCCAAAAAAGCAGCAATGAAACTAATTTTGTGGCCATAGTTTCTTTCCTGGAATTAAGCTTGAATAGTAATCACTTAAGAAAATGGTTGTCCCTTGTTTATTTTAggttttaatttgctttttaattcttttctgccttttctgGACTATTTTGTTCTTTTAAGGGATTACTATTTTAGCAGGGATGTGGTTCATAGAATTTGAATCCTATCTGAAGTCCTATGTTACGTTCCAGTGTAGTCTGTAAGAGACGGGAGGTAGTGAGGCTCCAGCCTGGCTCCAGCGTGTAAATATGCTTTGCTTTTGCCTTTACAGTTGAGTGGAGGCAAAGTACTGCACATTTCATACtgtacaaaataaatcattgCAATGGCATTCATCTGGTGTTCATTGCCTCTTCTAAACTCCAA

Function

symbol description
larp6 Enables RNA binding activity and myosin binding activity. Involved in positive regulation of collagen biosynthetic process; positive regulation of mRNA binding activity; and positive regulation of translation. Located in nucleus. Part of polysome.

NR:

description
PREDICTED: la-related protein 6-like

GO: NA

KEGG:

id description
K18733 LARP6; la-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927723.2 True 2783 mRNA 0.55 3 5409567 5414923

Neighbor

gene id symbol gene type direction distance location
ulk3 ulk3,LOC107665498,LOC107681021 coding downstream 37440 5354621 ~ 5372127 (-)
LOC113534806 NA coding downstream 302174 5085274 ~ 5107393 (-)
p2ry1 p2ry1,LOC102799884 coding downstream 433303 4973008 ~ 4976264 (-)
LOC113534489 rap2b coding downstream 478847 4928340 ~ 4930720 (-)
LOC113534715 arhgef26,LOC102799329 coding downstream 568533 4785197 ~ 4841034 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 155472 5570395 ~ 5583415 (-)
lsm14ab lsm14a coding upstream 229893 5644816 ~ 5658105 (-)
LOC113534713 NA coding upstream 377298 5792221 ~ 5796056 (-)
LOC113534712 NA coding upstream 390754 5805677 ~ 5807182 (-)
LOC117597570 NA coding upstream 392499 5807422 ~ 5809517 (-)
G94284 NA non-coding downstream 17719 5388102 ~ 5391848 (-)
G94058 NA non-coding downstream 73158 5332074 ~ 5336409 (-)
G94010 NA non-coding downstream 229766 5076140 ~ 5179801 (-)
G94045 LOC108264453 non-coding downstream 283240 5120028 ~ 5126327 (-)
G93988 NA non-coding downstream 398134 5007425 ~ 5011433 (-)
G94325 NA non-coding upstream 145632 5560555 ~ 5562406 (-)
G94441 NA non-coding upstream 288658 5703581 ~ 5703791 (-)
LOC117597596 NA non-coding upstream 496845 5911768 ~ 5913593 (-)
G94607 NA non-coding upstream 610437 6025360 ~ 6029235 (-)
G94608 NA non-coding upstream 614386 6029309 ~ 6030675 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 1188960 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 1235973 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1336034 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 1860816 3425718 ~ 3548751 (-)
G93047 NA other downstream 2641269 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 224773 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 298920 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 782320 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 1731577 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2023168 7438091 ~ 7694427 (-)

Expression


Co-expression Network