LOC113534806


Basic Information

Item Value
gene id LOC113534806
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5085274 ~ 5107393 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927773.2
TGAAGTATAAATAAGCCAGCATGGCGCGTCTCGATCCTATTTAGACTGATGATGGCACTCAGAATAGCATACACACTGCTTTTAGCTTTAATCTGGACTGTATTTTCCAGCTCCACACTCGGGATTCATCTGTTTAAGGCGAGGATCAGAGTGAAGGGAGAAAATGCAGAATTTCTCAGTTTTAAAACATCAAATGGAAACATGATAAATAACCTGAAGCTGATCCACAATCCCTACGGCGTAAACATTTTTGCAGGAGGTCCTCAGGGCCTGTACATGTTAAAACCAGGAAAACATCCAACACTGGAGCAGGTACATGTGCCGATATTTGGACCAGAATGCCAGAGCAGCACTACTGATTGTAAATACACAATCTCTTTACTGAAAGAAGGGAGGAATGGAAATCCACTGTTCATGTGTGGATCCAAACCAGAAACGACAATATGCTGTGATGTgACCTCAGAGCACGTTCCTGTGAACTGCTCCGAACTGATGTATCCAACACAAATCAATGATTCGTCTTTGCACGTTGGCAATTCGCTATATTACACAATCTCACATCGGAACAATGATGAATTAATTACCAGTGGCCTCTACAGATGGACTATGAGCAAAGCCACCTGGTCAAAGTCAAGACAAACCGAGCAGAGGTATGTAAAAATCTTAGCAAATCAAGGCAATGGATCACTGGATGGAAAAGTGTACACCTTCTACGTAGAACAGAACAAGAACCAGGACCCGGACATGCCCCACTGGATACCCCGAGTTTCTCAGATCTGCATGGCGGATCGTGGTGGAAGTAAATCTGTGCTGCAGTACCGCTGGACGTCCATGCTGACCGCACGCCTGTTTTGCGGAGATGAGAAGAAGCGGCTCTCGTATACAGAGCTGCTGGACGTTGCTGTGCTGGAAGCTGTGGAATGGAAAAACACCATGATTTACGCCCTCTTCAAAAATGCCTACAACTTgcgagcagtgtgtgtttacaaaatgTCCGACATCATTCGCGTCTTCACGAGCAACAATTTCAAAACTGGCACTGAGTCTTTCTCTTCACCACGTCCTGGAGAGtgcGTAGAAAACAGTCCTACGTTACCATCAAACATTCTGAAGTTTATGGAAAGTCATCCTGAGTTGGAGCAGTGGATTAAGCCTGCACAGGCCCCTCTGTTGTTCAACCATTATCACTACACACATCTGCAGGTGGACAGAGTGCAGAGCAAGAAATCAGGAAATAGCCATCATAATGTCCTCCTCATGAGTCTAGACAATGGCAATGTCCATAAAATCCTGGAACAGGATGGTGCCCCTTTCATCATCGCAGAGTACGAGCCCTTTAAAACCCGGACACACATCTCCAGCATGCTGCTTGACAGTAAAGCAAAAAAGCTGTTGGTGAGCTCCAGCAGTGAGGTGGTCCAGATCGACCTGCACAACTGCAGAGTGTATGGGAACCACTGTGACACATGTGTGATGGCCCGAGACCCATACTGTGGCTGGGACTGGACGAGGTGTTCAGCTGACACTGGaTCCTTAATACAAGATGTGACCCATGGAAACCACTCTATATGTGAAAAAAATGTCCCCAAAACCAGTGAGTCCCGGACGCATAGCAAGAGTGACTCTCCTAGCAGCGTCCCTCAAGACTCCAAATTCTTCCTTACATGTCCCATGGAATCCCAGCATGCCTCATATGCGTGGATCCACCAGGGCAGGACAATTGAGTGTGTCTTAGCTGAACAGGACTGCCTTTTGTTGATCGACAGCATGAGCGAAAAGGATGAGGGCGTTTATAAATGTGTCGCCTCAGAGAACGGCTACAACAGGGCAATCGTCCATCAGAAGCTGCAGATGAACGCCGCCTCGGAGACCAGAATGACAAACGTAGCTTTGTTGTGCCTTCTGTTCCTGATCTTTGTGATCTAGCACTATCTGGATGTTGaatttatgtagcacctttcTCATAATGAAGTTTGATTTAGAGTTTTGGGGGCCTCACACTCGTTAGTCGATGAACCCAGTCACAAAGTTTTCTAAGTACAATAACCACCCCTCACTCATACACATAAACCCTGAATAATAATGTGCCAACGGAAGAGACATAATAAGACAAGACCACAGCCAGTGAGATCATGTTCATTTTCCTGTGTTCACCGGAGTTACCACATCATCCCACCTTTGTTGAACTAAGGTTTCATGACTTGACTCATGAGTCCAGAGTGTGACTGATGCAACAATACCATTTCTACATGTGACTGCTCCATTACTGCATCAGTGAGTTTCCACAACCTTACAGCTCTTCAGAGGAACACAACATTTTACACCACCACAAACTGTGAAGTTACATGATGCTTTTATGTAAAGATGGTTAACATGCActgagaaatatattttaacaaaagtATTGTAAATTATTaggaatttttttctgtcacctAATTTATGATGTCCTTGATTTGTCTTATATAACTTCTTGCTTTTTggatgcatgtttataatagaATTTATCTGAAATTAACTCAAGAATAAAATCGCTATTTTACTAAGA

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927773.2 True 2548 mRNA 0.44 14 5085274 5107393

Neighbor

gene id symbol gene type direction distance location
p2ry1 p2ry1,LOC102799884 coding downstream 109010 4973008 ~ 4976264 (-)
LOC113534489 rap2b coding downstream 154554 4928340 ~ 4930720 (-)
LOC113534715 arhgef26,LOC102799329 coding downstream 244240 4785197 ~ 4841034 (-)
LOC113534432 mme,LOC107548962,LOC107695447 coding downstream 407914 4642261 ~ 4677360 (-)
LOC113534774 LOC108263974,LOC108263992,LOC108434102,LOC108437989 coding downstream 450517 4630852 ~ 4634757 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 247228 5354621 ~ 5372127 (-)
larp6a larp6,LOC107665376 coding upstream 302174 5409567 ~ 5414923 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 463002 5570395 ~ 5583415 (-)
lsm14ab lsm14a coding upstream 537423 5644816 ~ 5658105 (-)
LOC113534713 NA coding upstream 684828 5792221 ~ 5796056 (-)
G93988 NA non-coding downstream 73841 5007425 ~ 5011433 (-)
LOC117597587 NA non-coding downstream 113671 4966634 ~ 4971603 (-)
G93926 NA non-coding downstream 191200 4893586 ~ 4894074 (-)
G93896 NA non-coding downstream 300143 4783925 ~ 4785131 (-)
G93753 NA non-coding downstream 538569 4546439 ~ 4546705 (-)
G94045 LOC108264453 non-coding upstream 12635 5120028 ~ 5126327 (-)
G94058 NA non-coding upstream 224681 5332074 ~ 5336409 (-)
G94284 NA non-coding upstream 280709 5388102 ~ 5391848 (-)
G94325 NA non-coding upstream 453162 5560555 ~ 5562406 (-)
G94441 NA non-coding upstream 596188 5703581 ~ 5703791 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 864667 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 911680 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1011741 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 1536523 3425718 ~ 3548751 (-)
G93047 NA other downstream 2316976 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 532303 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 606450 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1089850 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2039107 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2330698 7438091 ~ 7694427 (-)

Expression


Co-expression Network