LOC117597506


Basic Information

Item Value
gene id LOC117597506
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 154067 ~ 155144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304930.1
TCTCCATAGCAGCTTACTGATTCATCTACGGTGTCACTGTCATTGTGCAGAACCATGAGCAGGAACTTCTTGTCCATGAACGAAGAGCTCCGTAAGGGAGACTTCCTGTTATCCAACAACCGAGAGTACAAGGCAATCTTTCAGGAGGATGGGAACTTTGTGGTCTACGGCTGGAGACCTCTGTGGGCATCTAATACATGTGGCAAAACCGACGCCCATCGGCTGATCATGCAAGGAGACTGCAACCTCGTCATGTACATGCCGGGCAGACCCGTGTGGGCCACCAATACTGACCGGAAGGACGCCAGAATGTGCCGTCTGACTCTGGGCAACGACGGCATTCTTGTTGTCGATAATGATGCGGCTGTGGTGTGGAAATCTACTAAGTCTAATTAAAAGCAATGAAGCAATCTTGTCTCAAAACTCTCTGCAGCTGTCAggaaagttataaaataaatcagtaaagagaagcagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304930.1 True 476 mRNA 0.48 3 154067 155144

Neighbor

gene id symbol gene type direction distance location
LOC113534665 NA coding downstream 12552 140270 ~ 141515 (-)
scg3 scg3,LOC107700587,LOC107550625,LOC107588544 coding downstream 17604 116563 ~ 136463 (-)
leo1 leo1,LOC102793363 coding downstream 93706 51413 ~ 60361 (-)
LOC113534766 mapk6,LOC107747613,LOC107550634,LOC107704268,LOC107700590,LOC107588533 coding downstream 134498 6409 ~ 19569 (-)
LOC117597586 NA coding upstream 21969 177113 ~ 177644 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding upstream 43829 198973 ~ 223384 (-)
LOC113534440 LOC108264511 coding upstream 83533 238677 ~ 247310 (-)
LOC113534387 NA coding upstream 368310 523454 ~ 660554 (-)
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding upstream 540025 695169 ~ 699777 (-)
G91764 NA non-coding downstream 68522 84295 ~ 85545 (-)
G91752 NA non-coding downstream 90793 53728 ~ 63274 (-)
G91786 LOC108237865,LOC106563385,LOC106560410,LOC106599233,LOC106566551,LOC106561221,LOC106564134,LOC106572279 non-coding upstream 28390 183534 ~ 183796 (-)
G91873 NA non-coding upstream 143403 298547 ~ 299097 (-)
G92197 NA non-coding upstream 237888 393032 ~ 395264 (-)
LOC117597554 NA non-coding upstream 334418 489562 ~ 490796 (-)
G92220 NA non-coding upstream 448906 604050 ~ 606076 (-)
LOC113534658 NA other downstream 9106 143425 ~ 144961 (-)
dmxl2 dmxl2 other upstream 111063 266207 ~ 323940 (-)
G92240 NA other upstream 551606 706750 ~ 747530 (-)
usp8 LOC107665382,LOC107595392 other upstream 627766 782910 ~ 802212 (-)
slc27a2a LOC108264486 other upstream 679972 835116 ~ 846935 (-)
G92340 NA other upstream 826923 982067 ~ 989056 (-)

Expression


Co-expression Network