si:dkey-30c15.10 (LOC108264154)


Basic Information

Item Value
gene id si:dkey-30c15.10
gene name LOC108264154
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30740467 ~ 30755090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304938.1
CGCCGAACGCGCGCGGAAATTCAAAAGTTCTTCCTTCAGTTGAACGAAGCGCGTTCACGAGAAACCGCCGTGTGTTGTTTCAGTCCTGTCACTGAGGAGGAGAGGATGGAAAAGCAGGCGGATAAAAAcccaaagagacagagagacccGCTGGAGGAGAACATCCCCGCCTCTAATGAGCTCGAGGCGGTGTTAAAGAGACGGCGCTTGGCTGCAGGAGGAGTCGAGAATCATAACCCCGAGCAGCGAGCTGTGAGGTCTCCGGCCCGGTCGCGGCACGTGGAGTCGGAGGTGAAACCGGACACGCCCGCCATCGCCTCGGTCCGACTCCGAGTTCAGCAGCTCGCCCAGAGACGGGATGgtggggcTGCGCTGGTCCAGCGCTGTATGTCAGACCCCGGGGCAGAGAGTCCCTCCAGCACTTTACTGCGAGACGTCTGTCACATCGgtgaaGGAGAGTTTATCTCTCGGTTGGAGCGCTTTAAGACCCCGACCCCAGAGAGCAGCCCCGCCCCGGCCACGCCCAGCACACGCCAGCTCTCCAGCTTTGTCCACAACATGCAGCAGCAGCTCAACGCCACCGCGACCCCCAGCAGCAAGGAGGCGTCCCGCATAcgccaggctcgAGAGGATGAGCTGAAGTCACTCAGGGTGCAGCCTCTCACAGAGAACATGTGGCTCAAGAGGAGCTTCTCTGACCCTTCACTGGCTGagAGAGTTACGCCTCCGAGCAGCTCTTGCGTTTGCCAGCGGACCAGAGCAATGCCTTGGCCTCCATTACAGTTTGAGAACGACGACTCCAGCATCGATTTCAAAGAATCTGAATGCAGTTTAAACTTCAGTGGCGTGAATGAGACGATGGGAGACAGTTTCAGCATCTCGTCTACCTTCACTGCAGAGACACAGCCTCCTGCTACAGCGCTTTGTGCTCCAGATTCCGTGGTGCGTCCTCATGAGGGAATGAGCACTTCTGCCTTAATCGACAAGATGTTCGAAGACGTCTTGCAGGCCGCCgacagagaagaggaagaagagaaagaggaagaagagcgAGGGAATGACACCGCCgacagagaagaggaagaagagaaagaggaagaagagcgAGGGAATGACAGCAGTGTGTCTGAGAGCAGAGAGGAAGCTGACGTGGAGACTGCTGAAACTGAGCCGAAGTTGAAATCTCCGAGTCCTAGCCCTGGAGGAGATGCAGAAGCTTGTGACGGAGAACAGAAAGAGTGCGAGAACTGGAACGAAGAAGAGGAAgtggctggagagagagaggagagcgCAGTGTGTAATGAGGAAGACTTCCTGTCTCTCCCGCCGAGCTGCGTCCTCTCTCCCCTCAGCAAGTCTGTCGAAGCCGTCGTCACGCCGATGaGGTTGACTGCCACTGCGCCTCCTCCCATGGTGCCGTGTGATCCTGCAGAGGAagtggccacgccccctgcgCCACCTCTGTACAGTATTGATGCGTACCGCTCTCAGAGAAAGATTCCTCCTCCGTCCTCTCAGAGTGTTACTCCTGGAGTTCAGAAACAGCGTGGTGAGAAATCTCGCATCAAACCGACCGTCAACACCAAGGAAACCATAAAGgctctCAGTGACGAGGCGTCCAAGCTGCAGACTGTTATAAACCAGACTCTCCAGGCCCTGAGCTGCTGCAGTGATGAAGAACACGGCAAAGGATCTCTGCAGGAGGCAGAAGCTGAGAAACTCCTGCTTGTTTCCAGTGAGAAGCGTGCGGCTCTGCTGGCCGAGATCAGTCGCCTGAGAGAGGGAGGAGCGGGACGAGAGCCGGACCTCCACCCTGTCCGTCTGCAGCCCTGTAGAGGCACCGTCAGCATCAACAACATCCAGCTGCCCCTCAAGGTGGAGTTTGTGTGCTCCGCCCGCACAGCTCGTCCTACTCACTACTTTTTCATCCTGATCCGTTACGGAGCGTGTAACATCGTGGCCACTCCGCTGGCGACTGCTGCTGACGCTGAGAACGGAGACACCATCACCTTCCCCACCTCCATCACACTgCAGGACATTCGCTCTAACTTTGAGATTGATGTAGAAGTCTACAGCCTGTGCAACAGCGCAGCGAACAGCAGCAGCGCTAACGTTCAACAGCACCGCAGTTCCACTCGATCAAAAGCGACACCAAAGAAGCTACTCAGCAGCATtaagAAATCCAACCCGTGTTCCACTACTGGAGCTTCATCTGCTCTGGATCCTCAGCGCTCCAGTAACTTCTCTCTAGTGGGTTCTCACAAGATCACGCTCTCCTCGCTGGGGCAGAGCAAGTTCCTGCTGGACAAGATGAAGTTTGAGGGCAAAATCAGGCGACTCCTGGGAGATGAGTTTCAGGAAAAGGTGCCCTTCCTGTCTCCCCTGGAGGGTCACATCTACCTGCGGCTGCACAGTGACAGTCACTCCAACGTACAGCACCAAGGATTTCTGACCATGTTTGAGGATGTGAGTGGGTTTGGAGCGTGGCAGCGTCTCTTCTTTAAGCTAGAAGGAGGTATTCTGTATTACTGGAACTACCCCAATGAGACGAGCAGCAAGccagcagagggcagcatCTCTCTGTGTGGCTTTGACAGCGTGAGGCCTGTGGAGAGGGACTCCTGCGCTCGGCCTCACACCTTTGAACTGGTGAACTCTAGGACCCTGCAGCAAGACCAAAGCCACACCTTAACCAAGAGCTGGTTCTCAGCAGACACTCGTGAGGAACGAGCAGACTGGATGGAGAAGCTGAACCAGGTGCTGCTGGACCTCCACACATGGAGCCGGCGAGCTGCTGGAGGAGAGAACGACCGAGCCAACATCTCGTCTATCACGGCAACGTCACGGGAAAGCGTCCTGTAGCACgttactgatacacacactgacaccagATGAAAGCAATTATCACTCAGTGTGAAGAGTAAAACACCCCGAGTCTGACGGACCGAGCAGCTTAGAGccgtgtgagagtgtgagagtgtgagtgagagtgtgcgTGAGAGGTGCGTGAGAGGTGCGTGAGAGGTgcgtg
>XM_034304939.1
CGCCGAACGCGCGCGGAAATTCAAAAGTTCTTCCTTCAGTTGAACGAAGCGCGTTCACGAGAAACCGCCGTGTGTTGTTTCAGTCCTGTCACTGAGGAGGAGAGGATGGAAAAGCAGGCGGATAAAAAcccaaagagacagagagacccGCTGGAGGAGAACATCCCCGCCTCTAATGAGCTCGAGGCGGTGTTAAAGAGACGGCGCTTGGCTGCAGGAGGAGTCGAGAATCATAACCCCGAGCAGCGAGCTGTGAGGTCTCCGGCCCGGTCGCGGCACGTGGAGTCGGAGGTGAAACCGGACACGCCCGCCATCGCCTCGGTCCGACTCCGAGTTCAGCAGCTCGCCCAGAGACGGGATGgtggggcTGCGCTGGTCCAGCGCTGTATGTCAGACCCCGGGGCAGAGAGTCCCTCCAGCACTTTACTGCGAGACGTCTGTCACATCGgtgaaGGAGAGTTTATCTCTCGGTTGGAGCGCTTTAAGACCCCGACCCCAGAGAGCAGCCCCGCCCCGGCCACGCCCAGCACACGCCAGCTCTCCAGCTTTGTCCACAACATGCAGCAGCAGCTCAACGCCACCGCGACCCCCAGCAGCAAGGAGGCGTCCCGCATAcgccaggctcgAGAGGATGAGCTGAAGTCACTCAGGGTGCAGCCTCTCACAGAGAACATGTGGCTCAAGAGGAGCTTCTCTGACCCTTCACTGGCTGagAGAGTTACGCCTCCGAGCAGCTCTTGCGTTTGCCAGCGGACCAGAGCAATGCCTTGGCCTCCATTACAGTTTGAGAACGACGACTCCAGCATCGATTTCAAAGAATCTGAATGCAGTTTAAACTTCAGTGGCGTGAATGAGACGATGGGAGACAGTTTCAGCATCTCGTCTACCTTCACTGCAGAGACACAGCCTCCTGCTACAGCGCTTTGTGCTCCAGATTCCGTGGTGCGTCCTCATGAGGGAATGAGCACTTCTGCCTTAATCGACAAGATGTTCGAAGACGTCTTGCAGGCCGCCgacagagaagaggaagaagagaaagaggaagaagagcgAGGGAATGACACCGCCgacagagaagaggaagaagagaaagaggaagaagagcgAGGGAATGACAGCAGTGTGTCTGAGAGCAGAGAGGAAGCTGACGTGGAGACTGCTGAAACTGAGCCGAAGTTGAAATCTCCGAGTCCTAGCCCTGGAGGAGATGCAGAAGCTTGTGACGGAGAACAGAAAGAGTGCGAGAACTGGAACGAAGAAGAGGAAgtggctggagagagagaggagagcgCAGTGTGTAATGAGGAAGACTTCCTGTCTCTCCCGCCGAGCTGCGTCCTCTCTCCCCTCAGCAAGTCTGTCGAAGCCGTCGTCACGCCGATGaGGTTGACTGCCACTGCGCCTCCTCCCATGGTGCCGTGTGATCCTGCAGAGGAagtggccacgccccctgcgCCACCTCTGTACAGTATTGATGCGTACCGCTCTCAGAGAAAGATTCCTCCTCCGTCCTCTCAGAGTGTTACTCCTGGAGTTCAGAAACAGCGTGGTGAGAAATCTCGCATCAAACCGACCGTCAACACCAAGGAAACCATAAAGgctctCAGTGACGAGGCGTCCAAGCTGCAGACTGTTATAAACCAGACTCTCCAGGCCCTGAGCTGCTGCAGTGATGAAGAACACGGCAAAGGATCTCTGCAGGAGGCAGAAGCTGAGAAACTCCTGCTTGTTTCCAGTGAGAAGCGTGCGGCTCTGCTGGCCGAGATCAGTCGCCTGAGAGAGGGAGGAGCGGGACGAGAGCCGGACCTCCACCCTGTCCGTCTGCAGCCCTGTAGAGGCACCGTCAGCATCAACAACATCCAGCTGCCCCTCAAGGTGGAGTTTGTGTGCTCCGCCCGCACAGCTCGTCCTACTCACTACTTTTTCATCCTGATCCGTTACGGAGCGTGTAACATCGTGGCCACTCCGCTGGCGACTGCTGCTGACGCTGAGAACGGAGACACCATCACCTTCCCCACCTCCATCACACTgCAGGACATTCGCTCTAACTTTGAGATTGATGTAGAAGTCTACAGCCTGTGCAACAGCGCAGCGAACAGCAGCAGCGCTAACGTTCAACAGCACCGCAGTTCCACTCGATCAAAAGCGACACCAAAGAAGCTACTCAGCAGCATtaagAAATCCAACCCGTGTTCCACTACTGGAGCTTCATCTGCTCTGGATCCTCAGCGCTCCAGTAACTTCTCTCTAGTGGGTTCTCACAAGATCACGCTCTCCTCGCTGGGGCAGAGCAAGTTCCTGCTGGACAAGGTGCCCTTCCTGTCTCCCCTGGAGGGTCACATCTACCTGCGGCTGCACAGTGACAGTCACTCCAACGTACAGCACCAAGGATTTCTGACCATGTTTGAGGATGTGAGTGGGTTTGGAGCGTGGCAGCGTCTCTTCTTTAAGCTAGAAGGAGGTATTCTGTATTACTGGAACTACCCCAATGAGACGAGCAGCAAGccagcagagggcagcatCTCTCTGTGTGGCTTTGACAGCGTGAGGCCTGTGGAGAGGGACTCCTGCGCTCGGCCTCACACCTTTGAACTGGTGAACTCTAGGACCCTGCAGCAAGACCAAAGCCACACCTTAACCAAGAGCTGGTTCTCAGCAGACACTCGTGAGGAACGAGCAGACTGGATGGAGAAGCTGAACCAGGTGCTGCTGGACCTCCACACATGGAGCCGGCGAGCTGCTGGAGGAGAGAACGACCGAGCCAACATCTCGTCTATCACGGCAACGTCACGGGAAAGCGTCCTGTAGCACgttactgatacacacactgacaccagATGAAAGCAATTATCACTCAGTGTGAAGAGTAAAACACCCCGAGTCTGACGGACCGAGCAGCTTAGAGccgtgtgagagtgtgagagtgtgagtgagagtgtgcgTGAGAGGTGCGTGAGAGGTGCGTGAGAGGTgcgtg
>XM_034304940.1
CGCCGAACGCGCGCGGAAATTCAAAAGTTCTTCCTTCAGTTGAACGAAGCGCGTTCACGAGAAACCGCCGTGTGTTGTTTCAGTCCTGTCACTGAGGAGGAGAGGATGGAAAAGCAGGCGGATAAAAAcccaaagagacagagagacccGCTGGAGGAGAACATCCCCGCCTCTAATGAGCTCGAGGCGGTGTTAAAGAGACGGCGCTTGGCTGCAGGAGGAGTCGAGAATCATAACCCCGAGCAGCGAGCTGTGAGGTCTCCGGCCCGGTCGCGGCACGTGGAGTCGGAGGTGAAACCGGACACGCCCGCCATCGCCTCGGTCCGACTCCGAGTTCAGCAGCTCGCCCAGAGACGGGATGgtggggcTGCGCTGGTCCAGCGCTGTATGTCAGACCCCGGGGCAGAGAGTCCCTCCAGCACTTTACTGCGAGACGTCTGTCACATCGgtgaaGGAGAGTTTATCTCTCGGTTGGAGCGCTTTAAGACCCCGACCCCAGAGAGCAGCCCCGCCCCGGCCACGCCCAGCACACGCCAGCTCTCCAGCTTTGTCCACAACATGCAGCAGCAGCTCAACGCCACCGCGACCCCCAGCAGCAAGGAGGCGTCCCGCATAcgccaggctcgAGAGGATGAGCTGAAGTCACTCAGGGTGCAGCCTCTCACAGAGAACATGTGGCTCAAGAGGAGCTTCTCTGACCCTTCACTGGCTGagGACGACTCCAGCATCGATTTCAAAGAATCTGAATGCAGTTTAAACTTCAGTGGCGTGAATGAGACGATGGGAGACAGTTTCAGCATCTCGTCTACCTTCACTGCAGAGACACAGCCTCCTGCTACAGCGCTTTGTGCTCCAGATTCCGTGGTGCGTCCTCATGAGGGAATGAGCACTTCTGCCTTAATCGACAAGATGTTCGAAGACGTCTTGCAGGCCGCCgacagagaagaggaagaagagaaagaggaagaagagcgAGGGAATGACACCGCCgacagagaagaggaagaagagaaagaggaagaagagcgAGGGAATGACAGCAGTGTGTCTGAGAGCAGAGAGGAAGCTGACGTGGAGACTGCTGAAACTGAGCCGAAGTTGAAATCTCCGAGTCCTAGCCCTGGAGGAGATGCAGAAGCTTGTGACGGAGAACAGAAAGAGTGCGAGAACTGGAACGAAGAAGAGGAAgtggctggagagagagaggagagcgCAGTGTGTAATGAGGAAGACTTCCTGTCTCTCCCGCCGAGCTGCGTCCTCTCTCCCCTCAGCAAGTCTGTCGAAGCCGTCGTCACGCCGATGaGGTTGACTGCCACTGCGCCTCCTCCCATGGTGCCGTGTGATCCTGCAGAGGAagtggccacgccccctgcgCCACCTCTGTACAGTATTGATGCGTACCGCTCTCAGAGAAAGATTCCTCCTCCGTCCTCTCAGAGTGTTACTCCTGGAGTTCAGAAACAGCGTGGTGAGAAATCTCGCATCAAACCGACCGTCAACACCAAGGAAACCATAAAGgctctCAGTGACGAGGCGTCCAAGCTGCAGACTGTTATAAACCAGACTCTCCAGGCCCTGAGCTGCTGCAGTGATGAAGAACACGGCAAAGGATCTCTGCAGGAGGCAGAAGCTGAGAAACTCCTGCTTGTTTCCAGTGAGAAGCGTGCGGCTCTGCTGGCCGAGATCAGTCGCCTGAGAGAGGGAGGAGCGGGACGAGAGCCGGACCTCCACCCTGTCCGTCTGCAGCCCTGTAGAGGCACCGTCAGCATCAACAACATCCAGCTGCCCCTCAAGGTGGAGTTTGTGTGCTCCGCCCGCACAGCTCGTCCTACTCACTACTTTTTCATCCTGATCCGTTACGGAGCGTGTAACATCGTGGCCACTCCGCTGGCGACTGCTGCTGACGCTGAGAACGGAGACACCATCACCTTCCCCACCTCCATCACACTgCAGGACATTCGCTCTAACTTTGAGATTGATGTAGAAGTCTACAGCCTGTGCAACAGCGCAGCGAACAGCAGCAGCGCTAACGTTCAACAGCACCGCAGTTCCACTCGATCAAAAGCGACACCAAAGAAGCTACTCAGCAGCATtaagAAATCCAACCCGTGTTCCACTACTGGAGCTTCATCTGCTCTGGATCCTCAGCGCTCCAGTAACTTCTCTCTAGTGGGTTCTCACAAGATCACGCTCTCCTCGCTGGGGCAGAGCAAGTTCCTGCTGGACAAGATGAAGTTTGAGGGCAAAATCAGGCGACTCCTGGGAGATGAGTTTCAGGAAAAGGTGCCCTTCCTGTCTCCCCTGGAGGGTCACATCTACCTGCGGCTGCACAGTGACAGTCACTCCAACGTACAGCACCAAGGATTTCTGACCATGTTTGAGGATGTGAGTGGGTTTGGAGCGTGGCAGCGTCTCTTCTTTAAGCTAGAAGGAGGTATTCTGTATTACTGGAACTACCCCAATGAGACGAGCAGCAAGccagcagagggcagcatCTCTCTGTGTGGCTTTGACAGCGTGAGGCCTGTGGAGAGGGACTCCTGCGCTCGGCCTCACACCTTTGAACTGGTGAACTCTAGGACCCTGCAGCAAGACCAAAGCCACACCTTAACCAAGAGCTGGTTCTCAGCAGACACTCGTGAGGAACGAGCAGACTGGATGGAGAAGCTGAACCAGGTGCTGCTGGACCTCCACACATGGAGCCGGCGAGCTGCTGGAGGAGAGAACGACCGAGCCAACATCTCGTCTATCACGGCAACGTCACGGGAAAGCGTCCTGTAGCACgttactgatacacacactgacaccagATGAAAGCAATTATCACTCAGTGTGAAGAGTAAAACACCCCGAGTCTGACGGACCGAGCAGCTTAGAGccgtgtgagagtgtgagagtgtgagtgagagtgtgcgTGAGAGGTGCGTGAGAGGTGCGTGAGAGGTgcgtg

Function

NR:

description
PREDICTED: actin-binding protein anillin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304938.1 True 3031 mRNA 0.56 24 30740467 30755090
XM_034304939.1 False 2977 mRNA 0.56 23 30740467 30755090
XM_034304940.1 False 2953 mRNA 0.56 23 30740467 30755090

Neighbor

gene id symbol gene type direction distance location
caps2 caps2 coding downstream 29744 30700440 ~ 30710723 (-)
cd9a cd9 coding downstream 115134 30614083 ~ 30625333 (-)
si:dkey-88e18.8 LOC108264158 coding downstream 131260 30604089 ~ 30609207 (-)
cfap161 cfap161 coding downstream 142723 30592721 ~ 30597744 (-)
utp15 utp15,LOC107559694,LOC107600050,LOC107735583 coding downstream 165792 30565402 ~ 30574675 (-)
pdp2 pdp2,LOC108423909 coding upstream 1359 30756449 ~ 30760179 (-)
si:dkey-30c15.2 LOC108264169 coding upstream 37850 30792940 ~ 30804496 (-)
LOC113524884 LOC108264165 coding upstream 95314 30850404 ~ 30857147 (-)
ppp1r37 ppp1r37 coding upstream 102839 30857929 ~ 30898090 (-)
gemin7 gemin7 coding upstream 206273 30961363 ~ 30967129 (-)
LOC113526678 NA non-coding downstream 25014 30714118 ~ 30715453 (-)
G107550 NA non-coding downstream 270564 30443523 ~ 30469903 (-)
G107574 NA non-coding downstream 317129 30421252 ~ 30423338 (-)
G107536 NA non-coding downstream 333503 30368887 ~ 30406964 (-)
G107532 NA non-coding downstream 349009 30363627 ~ 30391458 (-)
G107800 NA non-coding upstream 55957 30811047 ~ 30826087 (-)
G107804 NA non-coding upstream 65619 30820709 ~ 30822357 (-)
G107805 NA non-coding upstream 73061 30828151 ~ 30829653 (-)
G107806 NA non-coding upstream 80544 30835634 ~ 30884613 (-)
LOC117597590 NA non-coding upstream 145475 30900565 ~ 30908021 (-)
bbs10 bbs10 other downstream 8408 30728044 ~ 30732059 (-)
G107525 NA other downstream 395591 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 1026466 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3580368 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 4132128 26569085 ~ 26608339 (-)
selenot1b LOC108264179,LOC108429894 other upstream 30503 30785593 ~ 30849697 (-)
G107803 NA other upstream 61489 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 164094 30919184 ~ 30989204 (-)

Expression


Co-expression Network