LOC117597520 (LOC108264051)


Basic Information

Item Value
gene id LOC117597520
gene name LOC108264051
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30499865 ~ 30514364 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304989.1
AGTGTTCTCCTGGTTTGAGTGtggatacagtgtgtgtgtttgtaagtgtgtgtagagatggaGGATTGTGTGCGTTTGGTGTGTGAGACTCTGGGCGTACACACGGGCGATGAGGTGAGCGCAGAGAAGATCGCTGTGCTCTATCAGAAAGTCTTCCACACTGCCGCTGATCTCGGAGACGCACAGAGAGCCGTCAcgcaggtcagcGCACAGAACGGCGGGTTGCCATGTTCAGGCAGATGGATTCTGCATGTTCTTCTGGAGATGGAGAAGGAACGACAGAACAGGGAAAAGCTGTTCTGGGAGCTGCAGATGTTGAAAAGCAGCGTTTCTGATGGAGTAAACACACAACCGCTGTCCAAAAACTCCAGCTGCAAACACAAGAAAaagcGAGACACAAAGGCATGTGGTTTGTCGAGTCTCTTGGGAAGGGCTAGAAGACTTTATGTGagGCTGGATGTTGATGGTGTCTGGAGCATCCTCCCGTCTCCGTCCCTCAGTCACGTGACCTCCAGACGCCTGGGTTTGATCAATCCCACTAAATCAGACGTCCTGCTCTTACTGCAGTATAAATATGACATCATCAAAGAGCGACTTTACAGAGAGATGCTGCAGGAGGAGCATGgtgtcgGATGGTGGGAGTCGATGGAACCCTCGGAGcagacagactgtgtgtgtgatgtggagcAGAGAGCAGAAGAAGCTTTTAAACTGAAcgatgtgctgtgtgtgtgtgagctgcccGGCGTTCTTCACTGTTACAGGGGCGGAGACGAGGCGGAGTTACACTCCTGTCGTGATGAGGTCAGAGTGAGAGAGCGGGCGTGGACGTCCTCGCCCCGGGGACAGAGCTGGACATCCGCCATCTTCCTCTGTGATCTCCGGTCTCACTGTGAGGAGGAGAGACGCGCTCTCACCCGGCTGCTCAACAGAGTGGAGCGACTCGTCCTGACTGAGAtttatctgagtgtgtgtgtttctgtaaggagagccgagagagaaacacactcacacacggcACTGCTGACCTCCAGACAACACTGGGACAACtgGCCGTATCTGAGACGTTTGGGTGTGGAGGAGTTAGTGAAGTTCTGGCTGCAGGAGAAACAAGATCCAGCTACACCGCTCAGAAACGAGTGCAGAACATCACGCTGTGTACGACAGGCCGTGCTGCAGTGTGTGGTCCTGTGTCAGGAGCAGGAAAGGAGAACGCTCATGGAGATCCTACACAGTGTCTCACAGGAGGAGCTGCAggagcagagacacacactgacacctgactacaaggctgCAGGGACGACAGGTTCGGCTCTGAGACGAGGGTGTGTGTCCATCCTGAGGCAGATTAAATCCTCTCTACACTGCAGCTCCACACACTCGTCTGTGTCGTGGGCCGACTGCGCTGTTCATTTACTGgctcagctcacacacacacacgacgaGGAAGTCCagactgtaatacacacacttccagtcatgGATGCTGCTGCTCTTATGGTTCTGCTACACAAATATGAACTCGAGCTGCGTTCACCCAAACTACACAACCTGCACAACTTACTGCAGACGTCCAGCATCGAGAACACACAGATTAACGTCTCTGTAACAGACAGCGAGAGGACGGAGCAGAGACAGAACACTCCATCAGTTAGTGACGCACAACAAATCTGCACGGgcTGTGGTGTTGTCCTCGTCCCTGAGGACGCTCCGTATTTAGAGATCCTCGGCGTCGGAGAGAAGAGAGATgatgagaggaaagaaagaagagagggagaagaggaagagaggagagaaggaagagaggaagagaaagagaggagagaaagaagagagggagaagagaaagagtggAGAGAAGGAAGTgagggagaagagaagaggagagaaggacGAGAgGAAGTGACCTCAGCTCTACCTGAAGCACAGACGACAGAGGCGTCGTCTGCAGACTCACACACTccgcaccacacacactccgctTCGTCCGAGCACGAACACACACCGtctgcacacagacacacactcgtGGAGCCGCTGCAGGAGCAGTCCACATCCAGCATGGACGCTCAGAACGAGAGCAGCAGCGATGAACACGGAACAACATCAGCAGCTCTGGAGCTCGACTCGGAGAACGCACCGGCCACCggcgagacacacacacaggatgggGTGTGTGACggagtgtgtgaggaacagCAGCTCCAGCGAGATGCCACCATGCGCAGCCTCGTCGACATCCAGAGAAGAGCAGAGCAGCGGTGGCAACGAGACCGAGACCGACAAATTCTtagaGTTCAGGAGCGACTGTCAATCATTCAGAACAGGAAGTCAGACGAGGACGTGCTGGGCCTGAGACGCGAGGAAACATTCAGACACCTGACCAACACAcagGGACaacttgtgtga

Function

NR:

description
PREDICTED: uncharacterized protein LOC108264051

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304989.1 True 2409 mRNA 0.54 18 30499865 30514364

Neighbor

gene id symbol gene type direction distance location
ppp6r2b ppp6r2 coding downstream 9952 30469960 ~ 30489913 (-)
LOC113526499 LOC108264175 coding downstream 35791 30452707 ~ 30464074 (-)
adm2b LOC108264181 coding downstream 55546 30437029 ~ 30444319 (-)
miox miox,LOC107705808,LOC107686568,LOC102303880 coding downstream 66810 30427180 ~ 30433055 (-)
tnni1c tnni1,tnni1c,LOC107564917,LOC107705806,LOC107686571,LOC108423488 coding downstream 140335 30355521 ~ 30359530 (-)
kcp NA coding upstream 1989 30516353 ~ 30550285 (-)
calub calu,calub,LOC107600067,LOC105939814,LOC107735596,LOC107090546,LOC107662890 coding upstream 43231 30557595 ~ 30562846 (-)
utp15 utp15,LOC107559694,LOC107600050,LOC107735583 coding upstream 51038 30565402 ~ 30574675 (-)
cfap161 cfap161 coding upstream 78357 30592721 ~ 30597744 (-)
si:dkey-88e18.8 LOC108264158 coding upstream 89725 30604089 ~ 30609207 (-)
G107550 NA non-coding downstream 29962 30443523 ~ 30469903 (-)
G107574 NA non-coding downstream 76527 30421252 ~ 30423338 (-)
G107536 NA non-coding downstream 92901 30368887 ~ 30406964 (-)
G107532 NA non-coding downstream 108407 30363627 ~ 30391458 (-)
LOC113526678 NA non-coding upstream 199754 30714118 ~ 30715453 (-)
G107800 NA non-coding upstream 296683 30811047 ~ 30826087 (-)
G107804 NA non-coding upstream 306345 30820709 ~ 30822357 (-)
G107805 NA non-coding upstream 313787 30828151 ~ 30829653 (-)
G107806 NA non-coding upstream 321270 30835634 ~ 30884613 (-)
G107525 NA other downstream 154989 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 785864 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3339766 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 3891526 26569085 ~ 26608339 (-)
G105376 NA other downstream 4258860 26239330 ~ 26241005 (-)
bbs10 bbs10 other upstream 213680 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 271229 30785593 ~ 30849697 (-)
G107803 NA other upstream 302215 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 404820 30919184 ~ 30989204 (-)

Expression


Co-expression Network