LOC117597527 (LOC108264109,LOC108264108,LOC108264124,LOC108264193,LOC108263989,LOC108434035,LOC108434067,LOC108264189,LOC108264102)


Basic Information

Item Value
gene id LOC117597527
gene name LOC108264109,LOC108264108,LOC108264124,LOC108264193,LOC108263989,LOC108434035,LOC108434067,LOC108264189,LOC108264102
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4269479 ~ 4273667 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305024.1
ATGGAGTCAATATTTACTGTCTTGCATATGCTAATAGCCATCATCAATTTTTCGAGAGCTAATGAAACTACTTGTAGCCTGAGAGGAGAGCTTTCATACCcacatttttggaaaaatggtgATATCATAGTTGGAggaatttttccattttatagTAGTTGGGAGTTCACAGACTCATCCTATTCTGTCATGCCACCTCCAATAAAGTGCTCAAGCTTAGATTTCAGAGCCTTTCAATACACACAGTCCTTGATCTTTGCAGTAGAAGAGATTAACAACAGTTCCTCTTTACTTCCTGGAGTCTCACTGGGCTACAAGATCTATGACACCTGTAGTTCTTCAGCAATGGGAGTTAAAATGGCAATGACACTTATTAATGGAAACGAGAACTCGGTTGCACATCAGGTCTGCACAAAGCCAGCCCAGGTGCAAGCCATAATAGGCGAGGCATACTCATCGGTGTCCACAGTTATAGCAAAGAGTATTGGACCTTTCAACATGCCCATAATCAGTCACTCTGCCACCTGTGAGTGTCTCAGTGACAAAAAGAAATATCCCTCATTTCTGCGCACTGTTCCCAGTGATTACCACCAATCCCGGGCCCTGGCAGAGATGGTCAAACACTTTGGCTGGACCTGGGTGGGAGCAATAAGAAGAGATGATGACTATGGTAACAATGGGATGGCTACATTTACTAAAGTTGCAGAACAGTTGGGCATATGCTTAGAATATTCCCTTCCATTTTTTAGAACCTACTCACAAGAAAGAGTGCTGAGAATCATAGAGCAAATCAAAAGCTCCACTTCTCGAGTGATAGTAGGATTTCTTGCTCACTGGGATTGGGAGATTTTGGTACATGTATTTACTGAACACAACATCACTGGATACCAATGGGTGGGAACTGAAAGTTGGATCGGTGATCCAGTAGTGGCCACACTGGATAAGCAAAATATACTGCAAGGAGCCATAGGGCTTGCTATTTCCAAAACAACAGTAACTGGTCTAGAGGACTTCATTCTAGATATAAAACCACTGAAATCTGTAGGCAgtggtatttttaaaaaattttgggAAGCTCtgtttaattgtaaatatacaATGCAGAATGATTCGGGGGACTTACCAATGTGCACTGGAGAAGAAAATCTGTCCGAAGTGGAAAACACCTTCACTGATATGTCCATGATGCCCATTATCAGTAACGTGTATAAAGGTGTTTATGCCATTGGCCATACCCTACATGACCTTCTTGGCTGCAAACAAACTTGTCCTACAAAGAAGCAAGCTGATCCTCTCACTtttcttgAGCATATCAAAAAGGTGCATTTCAAGACCAAAGATGgtgaaagtgtttattttgataaaaatgGTGACCCTGcaggaaaatatgaaataataaactggcaaacaaataaagaacacCTGCATAAATTTGTTACTGTTGGATTTTATGACTCCTCttttcctggtcagagtcgTTTATCTGTAAACGTGACCTCTATTGTTTGGGCAAAAAATACTGATAAAGTACCACAATCTGTATGCAGCGAGAGCTGCCCACCTAGAACAAGGAAAGCTGTGCAAAAAGGAAAGCCTATCTGCTGCTTTGACTGCATACCATGTGCTGCAGGAGAGATTAGTAATATGACAGATTCTATTGAATGTATACAATGTCAGCAAGATTACTGGTCAAATCCACAGAAGGACGAATGTGTCAAGAAAGAAATTGAATATCTATCATATGAGGAAACTATGGGAATATTGCTCACAGTTATTTCTGTTGTCGGTGCATTTATGACAATGGTAATAGCAATCatatttcttaaatataaaaacactccAATAGTCAAAGCCAACAACTCTGAGCTCAGCTTCCTGCTGCTCTTTGCACTGGCTCTATGTTTCCTTTGTTCACTTACTTTCATTGGACGTCCCTCTGAGTGGTCTTGTATGCTGCGCCACACAGCATTTGGGATCACTTTTGTCCTCTGCATTTCCTGTGTTCTGGGAAAAACAATAGTGGTGTTAATGGCCTTCAGAGCTACACTTCCAGGCAGTAATGCCATGAAATGGTTTGGGCCTCCACAACAGAGACTTAGTGTACTTGCCTTCACTCTCATACAGGTGCTAATTTGTGTCCTTTGGCTCACAATATCTCCTCCTTTCCCCTTCAAAAACCTAAATCACTACAAGGAAAAGATAATTCTGGAATGTCATTTGGGCTCAACCATAGGATTCTGGGCTGTGCTGGGTTATATAGgacttttggctcttttatgttttgttttggctttTCTGGCTCGGAAGTTGCCTGATAATTTTAATGAAGCTAAATTCATTACGTTTAGCATGCTCATATTCTGTGCAGTTTGGATCACTTTTATTCCAGCTTATGTCAGTTCACCTGGGAAATTTACTGTAGCTGTGgaaatatttgccattttggcatCAAGCTTTGGTTTGTTATTCTGTATCTTTCTTCCAAAATGTTACATAATTATACTGAAGCCagagaaaaacactaaaaagcaAATTATGGGGAAAATACCAGTTAAGTAAGCTAACAGTCCaaatgttattcattaatatggCATGTAAAGCATATAACTAGGTAACTATAACTGAACACACTGGATATTTTAACATTAAGATCTGTTCTGTACCTTTTATTCACGTAATAATGGCTCATTGATATAGGGCATCCAccttaataatgataatattccattttaaaatgtttcttttgtaTCATTTTCCAACAAATTCCCATACTGTGAAGTATGTAGCACAAGCACCATTAACATAAAAAGATtgattgaatgaataaatgaatgaatgaatgaatgaatgaatttttaatacatttaaacttGTGAATTATGAATATATGCAGAATCCCAGGGTACAAaacaaatgtatataaaaacCCATATCTCTTGTATCAGCACTGAATTATGGCCAAGTGTAAAATCTACAGCTAGTAACACAAGCTGATTTGGAAATCAAAGACCATGGAGGGAGATATA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305024.1 True 3026 mRNA 0.39 6 4269479 4273667

Neighbor

gene id symbol gene type direction distance location
LOC117597613 NA coding downstream 38162 4226231 ~ 4231317 (-)
LOC113534737 LOC108264111,LOC108264124,LOC108434067,LOC108434036,LOC108264109,LOC108434043,LOC103037408,LOC108264189 coding downstream 74427 4191685 ~ 4195052 (-)
LOC113534616 LOC108264115,LOC108434087 coding downstream 120069 4143231 ~ 4149410 (-)
LOC113534615 LOC108264116,LOC108434034,LOC108264184,LOC108264127,LOC108264128,LOC108264136,LOC108264183 coding downstream 128877 4137160 ~ 4140602 (-)
LOC117597529 NA coding downstream 135419 4131265 ~ 4134060 (-)
LOC117597581 LOC108264109,LOC108264108,LOC108264193,LOC108263989,LOC108264124,LOC108434035,LOC108264189,LOC108264106,LOC108434067 coding upstream 20388 4294055 ~ 4297771 (-)
LOC113534650 LOC108264109,LOC108263989,LOC108264108,LOC108264189,LOC108264193,LOC108264106,LOC108264102,LOC108264124,LOC108434067,LOC108264104 coding upstream 55550 4329217 ~ 4332931 (-)
LOC113534639 LOC108264108,LOC108264106,LOC108264189,LOC108264104,LOC108264105,LOC108264109,LOC108264107,LOC108264102,LOC108263989,LOC108264193 coding upstream 67899 4341566 ~ 4344946 (-)
LOC113534706 LOC108264189,LOC108264106,LOC108264108,LOC108264104,LOC108264109,LOC108264107,LOC108264105,LOC108264102,LOC108263989,LOC108264124 coding upstream 81000 4354667 ~ 4358066 (-)
LOC113534610 LOC108264106,LOC108264189,LOC108264108,LOC108264104,LOC108264107,LOC108264102,LOC108264109,LOC108264105,LOC108263989,LOC108264193 coding upstream 97707 4371374 ~ 4374959 (-)
LOC117597614 NA non-coding downstream 37648 4231460 ~ 4231831 (-)
G93716 NA non-coding downstream 85486 4183755 ~ 4183993 (-)
G93710 NA non-coding downstream 97167 4172073 ~ 4172312 (-)
G93707 NA non-coding downstream 113982 4155257 ~ 4155497 (-)
LOC113534402 NA non-coding downstream 323103 3944987 ~ 3946376 (-)
G93753 NA non-coding upstream 272772 4546439 ~ 4546705 (-)
G93896 NA non-coding upstream 510258 4783925 ~ 4785131 (-)
G93926 NA non-coding upstream 619919 4893586 ~ 4894074 (-)
LOC117597587 NA non-coding upstream 692967 4966634 ~ 4971603 (-)
G93988 NA non-coding upstream 733758 5007425 ~ 5011433 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 48872 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 95885 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 195946 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 720728 3425718 ~ 3548751 (-)
G93047 NA other downstream 1501181 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 1366029 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1440176 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1923576 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2872833 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 3164424 7438091 ~ 7694427 (-)

Expression


Co-expression Network