si:dkey-30c15.2 (LOC108264169)


Basic Information

Item Value
gene id si:dkey-30c15.2
gene name LOC108264169
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30792940 ~ 30804496 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305116.1
ttattattattattattattattattattattattacacactgcGGTGAAGGACATCATCCAGAAAAACAATCAGCCCCCAGGTGAAGGAGCGCGTTTTATTCCTCCAGACTGAGTGGATTTGGAAGATGAGATGAAGATTTATGGaatatttctttacttttaattctctggactttttttgttgttgattcaGCGACATGAACTCCAGCAGCGGATTATCAGACCGAGAGctcaCAGCTCTCTCTTCCGTGTACGTCTCCTGTCTCAGCTTAAGtttaattgGGAGCTGCTCTGTTTTCATCGCATCGATtgtaaagagaaaaaagctCAATGAACAGgcgaAGCCTCTGATCCAGCTGGCTCTAGCGGACCTGCTGgcgtctctctgcctctccatcACGGCTCTGCTGAACTTCCTGTCGGCCGGAGCGGTGCGGAGCAGTGAAGTGGTGTGCAGCGCAGGATTAGCTCTGTCTCTGACGTTTTATTATgtctctttcctcctcctcgtcGTTTATGCCTGTGAGTCAGCACACAGCGTTcagggatggagggaggaagATGAGAGAAGGTTCACACATCAGGACAGCAGGCGGAGGAGGAGGCTGATCGATCTGCTGTACGTGCTTGTGTGGACGGTACCAGTGATTGGATACGTGATCTACATCGGGACTGTTTCTTTTCCTATGATGTCTCTAATACCATCACATCAAGCCTCCAATTATAAACAAAGTGTTTGGCCCAATGCTCGCTTCTgcaacagTTGTATTCTGTTCCTCCACCTGCACATCGATGATAATGAAGTCTGTTCCACTGTGgatttaaaacatattaagtATATCAAGATTTTCACCTTTACAAGTGTGCTGTCTGTCCTCATCTGCTGTactTTGATGTACTGGAGGCTCCAGGTCAAATTGAGGCGTTATGACCAGGGCGGTGTGAGGCGAGCAGAGAGGATCTGGTCCTCGGCCAGGTACATGATCCTCGTCATCGTCCTCTGCTGGACTCCGGctcttgTGCTGATTGGTTTCTCGTTCGCTTGCTCTGAGACGGAGAGTTTGTTTCCTCTTTTCAtcatacaggctgtGTCAGTCTCTCTACACGGTTTCCTCAACAGCATCGTCTATGCCTGGAGACGCCGTAACTTCCGAGAAGCCGTGCTCGGGGAGAGAATGCCTCTGCTTTCCTACACACACCGAGCTTTCTTTGACCAATCGCTGAGAAACGATGcagaggaaacaggaagtggagagAATTAAATTAATATCAGACATCCAGAGACTAGTTACATTCATGAAGCACAAATGAACTCACAATGCAAGAAGCAGAGCACTTCTTAATCATACTGGAGGGATCTGATGAAAATGACACTTTGGTGATTTATTACATCTGCATGAACTTTTGAGTCTCAAGGTGGCAAAACTTATTTCAAATTTGTGATAGATattgaaattacacacatcggAATTCAGACTCGGACTTAAATGATCTCTTAGGAAGTGTAGATTTCTTCAATAAAGGaaaagttatttaacatttctcattatgagattgttatataacaaatagAAAACCATTAAGCccatttctagacatatttactaattaaaAACTCTTCTAACCCTAGAAATAAACACCTGAAATAAGTCATACATTATAATTGTAAGTTATCAGTGATCTGCGAATAGAATAAGATCATTTAAAGCTTGAGTCGCACTATAATTgagtaaaaatatctagaaataggattaataatgtgatatttgtttaaaaacaaagaaagagaaatattagttaaATTTCGGCCatgttcaagatattttttGTTGCGTAGAGATCATTATTTGCAGTGCAGCGATATTCAGAAGTAACACatggggcggagtttgtctaaaacagaggcgtgtctcagttacgcaTGATTCTGACCTGAAGTTGATATTTCCTGTGTGATATCAGCTCGAGCGATTAGCAGGAGTAAAGCAGGCGCATATGTGAAAAACTCCAACCTCAGAGgcgtgaactacacgcaggCGATTTTAATAacctgaatgtggagctcagaaacagccgcgtaacccgactctgaataccagcaactttccccatgtaaatacTGACGTAACTTTTGAACTGAATTCGCCGACTCTGATTACGGCTCTGAGGTGGATACCGAGTGTGAATGAAGTATTTAAAGATAACAGCAGACTGAGTTTGGCTGTATacgtgttaaaaataaaatatgaggcaccttttttttttgtattttatctgGAATGTTTTTATCCCTCTGCTGCGTaagttatattaatgtttttgatGTGTACAGAATAAATAACCTGATATTAAACTTTAACATGCAcatttgatagatagatagatagatagatagatagacagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagataaagggCATTTATTAGCAAACAGGTAGGAGTAAGATTAAAACAAATGGAGTATATTTTCTAACATATagtaatgttatattttttcctGCTCATGCATGTGAACTTatgttaatttaattgttttatctgaagtgtgtattataaaaacagacatatgtgtgtgttatatttttatgcaCTAAAACTCAAGGCACCTTTCACatttcaggaattttttttttttgcatttctaaCATGAATGATCCATTCCGTGACTGATATGATGTGAATTGTTCTTTGGCTTTTATTCTGTTATGTAACAATGACCCAGTGAAATATTTCA

Function

NR:

description
transmembrane protein 116-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305116.1 True 2798 mRNA 0.39 12 30792940 30804496

Neighbor

gene id symbol gene type direction distance location
pdp2 pdp2,LOC108423909 coding downstream 32761 30756449 ~ 30760179 (-)
si:dkey-30c15.10 LOC108264154 coding downstream 37850 30740467 ~ 30755090 (-)
caps2 caps2 coding downstream 82217 30700440 ~ 30710723 (-)
cd9a cd9 coding downstream 167607 30614083 ~ 30625333 (-)
si:dkey-88e18.8 LOC108264158 coding downstream 183733 30604089 ~ 30609207 (-)
LOC113524884 LOC108264165 coding upstream 45908 30850404 ~ 30857147 (-)
ppp1r37 ppp1r37 coding upstream 53433 30857929 ~ 30898090 (-)
gemin7 gemin7 coding upstream 156867 30961363 ~ 30967129 (-)
LOC113524886 arhgap42,LOC108264155,LOC108429891 coding upstream 182759 30987255 ~ 31068479 (-)
cntn5 cntn5,LOC107691883 coding upstream 303194 31107690 ~ 31236932 (-)
LOC113526678 NA non-coding downstream 77487 30714118 ~ 30715453 (-)
G107550 NA non-coding downstream 323037 30443523 ~ 30469903 (-)
G107574 NA non-coding downstream 369602 30421252 ~ 30423338 (-)
G107536 NA non-coding downstream 385976 30368887 ~ 30406964 (-)
G107533 NA non-coding downstream 423752 30368338 ~ 30369188 (-)
G107800 NA non-coding upstream 6551 30811047 ~ 30826087 (-)
G107804 NA non-coding upstream 16213 30820709 ~ 30822357 (-)
G107805 NA non-coding upstream 23655 30828151 ~ 30829653 (-)
G107806 NA non-coding upstream 31138 30835634 ~ 30884613 (-)
LOC117597590 NA non-coding upstream 96069 30900565 ~ 30908021 (-)
bbs10 bbs10 other downstream 60881 30728044 ~ 30732059 (-)
G107525 NA other downstream 448064 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 1078939 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3632841 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 4184601 26569085 ~ 26608339 (-)
G107803 NA other upstream 12083 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 114688 30919184 ~ 30989204 (-)

Expression


Co-expression Network