LOC117597537 (fsd2)


Basic Information

Item Value
gene id LOC117597537
gene name fsd2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1034949 ~ 1056267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305118.1
atgagTTTTATTTTCTCCCTCAGTATGGATCTGTATGAGATGAGGGGTCGACTGCAGGTCATCGCCGAGGAAACCACAGcgagtgaggaagaggaggagaatgaagaggaagatgaagatgagTTTGTGatggtgagaaacaggaagttgaTCTCTGACCCCACTGGCCCCCCTGATGCCTGGTGTAGAGACTGCAGCGTCCCGACACACTCGAACCcgagggaacacacacacacacagcacggAGTCGTCACTCTCAGCACCGCCGCTCAGGagatcaagagtgagCTTGGTAAGCACAGCAGCAGTTTAGCAGGGAAGATCACAGAGATGGACAGCTTCATCGGCAACCTGGAGGAGATCTTCATCACTGTGGAGgagAATTTCGGGCGTCAGGAGCAGAATCTGGAGCAGCACTATAACGACGTGCTGCAGTCTCTGTCTCAGCGTTTCAGAGAGAACAGCGCCGCCCTGCAGGACGAGAAGAAACTGAAACTGGAGGCTCTTTACGGGCAGCTGCTGAGCTGCGGAGACGCGCTGACGGCGAGTAAAGAGCTGATCGAACATGCGCAAGAACTGCACCGCTGCGATGACAAATACACCTTCCtacagACCGTAATGCCCATCATTAAGAGgatggaggacttttCAAAGGAGGAGGTGGAGCTTAAGGTGGGCGTGTCTATGGACTTTGCTCCACCCCCTTCAGACCTGACTGAGGTGAAACACATGATGGACTCCATTAATGTTGTACCAGctcccTCGGCCCCGGTTATGAACCCTCAGTTGGTGAACTCCGCCATGCCCTCTTCTCTGCGCGTGTGTTGGAGTCTGTTCTCCGACGATACGGTGGATTTCTACGAACTTTACTCCCGCCAGATCTCTGAGGACATCGCCACGGAAACCATGCAGGATGcatCTGTGTTGAGAGTAAAGGAGACTCACTGTGTGGTAAAGGACCTTCGTCCTAATTCTCAGTATGAATTTTGGGTCACAGCGACAAACACAACAGGAATCAGTCCAGCCAGTGAGAAGGCCGTGTACATGACcgtccccTCTCCTCCTGTGATTAGAGAGCGCGAGTGTGTGAGCTGTCTGGAGGCGGCGCTGATCCGCTGGGACTCTGGAAACACAAACCCAGTGGAGTCGTACACACTCGAGTTGTGTGAGGATGGAGAGACGGACAACGCAGTGAcggagtcGATCGTGGCAATCCCcacctgtgagtgtgtggtgcaGCTGAAGCCGTGGAAACGTTACATCATTACTGTCCGAGCTGTGAACATCGGCGGTGCCAGTGAAAAGAGTCGACCAATCAGGATCTCCACTACAGggactTTTTTCCACCTGCTGAAGGAGACGGCTCACCCGAGCCTGTGCATGTTGGATGACGGTTTCACCATCGTTTACCCGGACGAGGATCTTCCTCTGAGTGACATGGTGTTCAGCGACACCACCTTCAACagttgtgtagctGTGCTCGGTGACCTCATTCCTGTACGGGGGCGTCACTATTGGGAGATAGAAGTCGATGACTGGACAGAGTAtagagtgggcgtggcctacgAGGACACACAACGCAGCTCTTATCTTGGTGCTAATGCTACATCCTGGTGCATGAGACACATTCGCACACcttccagACACAAGTACGAGTTCCTGCATAACGGCTGGAGTGCGGACGTGCGCATCACGGTGCAGCCGCTGCGTGTCGGCGTGTTTCTGGATTACGACAGCGGCACACTCTCCttctacaacacacacctgcagcagcACTTACACACCTTCAGGTGCTGCTTCACACACAACGTCATGCCCTGCTTCGCCCTGGATAAACCCGGAACACTGAGGATACACACCGGGGTTCATACACcatcatacatcacacacacgcacacataaaacacacacacgcgcaagAGGATGTATCGCGTAATGTGACCtagcatctcacacacacacacacacacattttgctcTAACACAGTCTCTTATCCCAGatgtgtatttaatttattttgaagattgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttatttgACTGTAATGGAAATAGAGCTGCAGGTTGTGATTCCTGAATGAATCAatattgatatttaatatatatatataatatgtaagtCCTCTGTTAGATGAGTGGAATTAAGCTCTATTTGGGGCTTTGTTTACGCTGTGTGTTTCTGCGActctaaaactaaataaaatgtctgattAATGTCTGA
>XM_034305119.1
tgtaagggaagtgtaaaaaaaaatcctttgatTCTGGGACTTTTGGGACATTTTTTCTAGTTAcaaatatgagtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgaagacacaCTGCAGAATCTACACTTCAGTCCGGAAGTATGGATCTGTATGAGATGAGGGGTCGACTGCAGGTCATCGCCGAGGAAACCACAGcgagtgaggaagaggaggagaatgaagaggaagatgaagatgagTTTGTGatggtgagaaacaggaagttgaTCTCTGACCCCACTGGCCCCCCTGATGCCTGGTGTAGAGACTGCAGCGTCCCGACACACTCGAACCcgagggaacacacacacacacagcacggAGTCGTCACTCTCAGCACCGCCGCTCAGGagatcaagagtgagCTTGGTAAGCACAGCAGCAGTTTAGCAGGGAAGATCACAGAGATGGACAGCTTCATCGGCAACCTGGAGGAGATCTTCATCACTGTGGAGgagAATTTCGGGCGTCAGGAGCAGAATCTGGAGCAGCACTATAACGACGTGCTGCAGTCTCTGTCTCAGCGTTTCAGAGAGAACAGCGCCGCCCTGCAGGACGAGAAGAAACTGAAACTGGAGGCTCTTTACGGGCAGCTGCTGAGCTGCGGAGACGCGCTGACGGCGAGTAAAGAGCTGATCGAACATGCGCAAGAACTGCACCGCTGCGATGACAAATACACCTTCCtacagACCGTAATGCCCATCATTAAGAGgatggaggacttttCAAAGGAGGAGGTGGAGCTTAAGGTGGGCGTGTCTATGGACTTTGCTCCACCCCCTTCAGACCTGACTGAGGTGAAACACATGATGGACTCCATTAATGTTGTACCAGctcccTCGGCCCCGGTTATGAACCCTCAGTTGGTGAACTCCGCCATGCCCTCTTCTCTGCGCGTGTGTTGGAGTCTGTTCTCCGACGATACGGTGGATTTCTACGAACTTTACTCCCGCCAGATCTCTGAGGACATCGCCACGGAAACCATGCAGGATGcatCTGTGTTGAGAGTAAAGGAGACTCACTGTGTGGTAAAGGACCTTCGTCCTAATTCTCAGTATGAATTTTGGGTCACAGCGACAAACACAACAGGAATCAGTCCAGCCAGTGAGAAGGCCGTGTACATGACcgtccccTCTCCTCCTGTGATTAGAGAGCGCGAGTGTGTGAGCTGTCTGGAGGCGGCGCTGATCCGCTGGGACTCTGGAAACACAAACCCAGTGGAGTCGTACACACTCGAGTTGTGTGAGGATGGAGAGACGGACAACGCAGTGAcggagtcGATCGTGGCAATCCCcacctgtgagtgtgtggtgcaGCTGAAGCCGTGGAAACGTTACATCATTACTGTCCGAGCTGTGAACATCGGCGGTGCCAGTGAAAAGAGTCGACCAATCAGGATCTCCACTACAGggactTTTTTCCACCTGCTGAAGGAGACGGCTCACCCGAGCCTGTGCATGTTGGATGACGGTTTCACCATCGTTTACCCGGACGAGGATCTTCCTCTGAGTGACATGGTGTTCAGCGACACCACCTTCAACagttgtgtagctGTGCTCGGTGACCTCATTCCTGTACGGGGGCGTCACTATTGGGAGATAGAAGTCGATGACTGGACAGAGTAtagagtgggcgtggcctacgAGGACACACAACGCAGCTCTTATCTTGGTGCTAATGCTACATCCTGGTGCATGAGACACATTCGCACACcttccagACACAAGTACGAGTTCCTGCATAACGGCTGGAGTGCGGACGTGCGCATCACGGTGCAGCCGCTGCGTGTCGGCGTGTTTCTGGATTACGACAGCGGCACACTCTCCttctacaacacacacctgcagcagcACTTACACACCTTCAGGTGCTGCTTCACACACAACGTCATGCCCTGCTTCGCCCTGGATAAACCCGGAACACTGAGGATACACACCGGGGTTCATACACcatcatacatcacacacacgcacacataaaacacacacacgcgcaagAGGATGTATCGCGTAATGTGACCtagcatctcacacacacacacacacacattttgctcTAACACAGTCTCTTATCCCAGatgtgtatttaatttattttgaagattgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttatttgACTGTAATGGAAATAGAGCTGCAGGTTGTGATTCCTGAATGAATCAatattgatatttaatatatatatataatatgtaagtCCTCTGTTAGATGAGTGGAATTAAGCTCTATTTGGGGCTTTGTTTACGCTGTGTGTTTCTGCGActctaaaactaaataaaatgtctgattAATGTCTGA

Function

symbol description
fsd2 Predicted to be located in nucleus; perinuclear region of cytoplasm; and sarcoplasmic reticulum.

NR:

description
PREDICTED: fibronectin type III and SPRY domain-containing protein 2 isoform X1

GO: NA

KEGG:

id description
K24490 FSD2; fibronectin type III and SPRY domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305118.1 False 2287 mRNA 0.51 12 1034949 1041417
XM_034305119.1 True 2475 mRNA 0.50 14 1034949 1056267

Neighbor

gene id symbol gene type direction distance location
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 335172 695169 ~ 699777 (-)
LOC113534387 NA coding downstream 374395 523454 ~ 660554 (-)
LOC113534440 LOC108264511 coding downstream 787639 238677 ~ 247310 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding downstream 811565 198973 ~ 223384 (-)
LOC117597586 NA coding downstream 857305 177113 ~ 177644 (-)
homer2 homer2,LOC108414443 coding upstream 438 1056705 ~ 1074903 (-)
LOC113526880 NA coding upstream 26429 1082696 ~ 1085313 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding upstream 47684 1103951 ~ 1116054 (-)
bnc1 bnc1,LOC106591559 coding upstream 69364 1125631 ~ 1149797 (-)
spata5l1 spata5l1 coding upstream 171340 1227607 ~ 1234626 (-)
G92359 NA non-coding downstream 18767 1014447 ~ 1016182 (-)
G92343 NA non-coding downstream 50428 982501 ~ 984521 (-)
G92282 LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478 non-coding downstream 58400 931958 ~ 976549 (-)
G92338 NA non-coding downstream 71739 962489 ~ 963210 (-)
G92309 NA non-coding downstream 110830 887007 ~ 924119 (-)
G92294 NA non-coding upstream 93272 1149539 ~ 1216437 (-)
G92412 NA non-coding upstream 232434 1288701 ~ 1295898 (-)
G92421 NA non-coding upstream 280624 1336891 ~ 1341381 (-)
G92415 NA non-coding upstream 288283 1344550 ~ 1344828 (-)
G92413 secisbp2l non-coding upstream 294939 1351206 ~ 1354977 (-)
G92340 NA other downstream 45893 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 188014 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 232737 782910 ~ 802212 (-)
G92240 NA other downstream 287419 706750 ~ 747530 (-)
dmxl2 dmxl2 other downstream 711009 266207 ~ 323940 (-)
bloc1s6 bloc1s6 other upstream 140868 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 166454 1222721 ~ 1226351 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 459471 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 555544 1611811 ~ 1648286 (-)
G92531 NA other upstream 712138 1768405 ~ 1768795 (-)

Expression


Co-expression Network