homer2 (homer2,LOC108414443)


Basic Information

Item Value
gene id homer2
gene name homer2,LOC108414443
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1056705 ~ 1074903 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305120.1
TGATCCgagcaacacacactctttctcacacacacacacacacacacacacacactcgcgcgcgCAGTGTGAGGATCAGAAGTGCTTCGGTTCATGACGATCGGGTTTCAGTCTCGGGGCCTGAAATGGAGTCGGAGCggagctaacacacacacacacacacacacacacacacacacacacacacacttccatacacttatacactctcacacacacacctcaccctCATAGCGCTCAGTTTTCCGACGCGGATCCACGGCCATGggggagcAGCCGATCTTCACCACTCGAGCTCATGTCTTCCAGATCGATCCCACCACCAAGAAGAACTGGGTTCCTGCCAGTAAACAAGCCGTCACCGTGTCCTACTTTTACGACAGCACTCGCAACAGCTATCGCATCATCAGCGTGGacgggtcaaaggtgatcATAAACAGCACCATCACCCCCAACATGACCTTCACAAAGACGTCACAGAAGTTCGGCCAATGGGCCGACAGCCGCGCAAACACCGTGTTCGGTCTCGGGTTCGCCTCTGAACAGCAGCTGTCCAAGTTTGCTGAAAAGTTCCAGGAAGTGAAGGATGCGGCTAAAATGGCAAGAGAGAAATCACAGGAGAAAACAGATGCAGCCAGCATCCACTCACAGGAATCTGGCCGCGAGACTCCACTGTCCAATCAGGCGTCGAGTATGAATGGTACAGACGATGACAAAATCTCACACCCACCTGATAACACGGTGCTGATGAGTGAGAACAACCGACTGAAGTCTGCTGTGGagcagagtaCTAACCAGTATGAGTCGGAGCTGCAGGCTCTGAAGGAGAGTAACGCTCGGCTGATGGAGGCTCTGCAGGAGGCAAACAGCAGTGTGGAGAAgtggaaaacacacaccagcGCATGCCAGGAGGAGAACACCACACTCAAGAacaagattgcAGACCTGGAGGCGGTGTGTAAAGAGGTGAatcaggagaaagagagaaacgcTCAGCTCAGTACCCGAGTGCAGAAACTTGAGAACGAAATAAAGGACAAAgagcaggagCTTGAGAATCTGAGGAAGCAGGCTGAGATAATTCCACAGCTCATGTCCGAATGTGACAACCTCAACGCCAAGCTACAGGCGGCGGAGCTGGCCAATCAGGAGGCTCGTGGGCGTGTGTCAGCGCTGCAGAGTGAGGTGAGTGAAGGACAGCAAAGACAAGGAGCCATGAAGAAAGAGCTGAAGAAGTTCATGGAGCTTCTGGAGGGCAAGATAGACGAACTGCACGAAGTCCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacacacacacacacacacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGGACAactaacacagacacacacacacacacacacacacacagacacacacacacacagacacacacacacacagacacacacacacaccacacacacaccccaagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacacacacacacacacacacacacacacacacacaccccccgaGTTCGCCAGGGACTGTCTCACCCGGACATGGACAActaactcactctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacagaatccgCCAGAGACTGTCTCACCCAGACATGGAcaactgactcacacacacactctctctctctctcttacacacacaatatagcATCTCAATATCTAGGGAGTGACAGCCATAAATCCTTATATTACAATATTGTatgtaatataacataataatgtacttatatctcacacacacacacacacacacac
>XM_034305121.1
TTTGATCCgagcaacacacactctttctcacacacacacacacacacacacacacactcgcgcgcgCAGTGTGAGGATCAGAAGTGCTTCGGTTCATGACGATCGGGTTTCAGTCTCGGGGCCTGAAATGGAGTCGGAGCggagctaacacacacacacacacacacacacacacacacacacacacacacttccatacacttatacactctcacacacacacctcaccctCATAGCGCTCAGTTTTCCGACGCGGATCCACGGCCATGggggagcAGCCGATCTTCACCACTCGAGCTCATGTCTTCCAGATCGATCCCACCACCAAGAAGAACTGGGTTCCTGCCAGTAAACAAGCCGTCACCGTGTCCTACTTTTACGACAGCACTCGCAACAGCTATCGCATCATCAGCGTGGacgggtcaaaggtgatcATAAACAGCACCATCACCCCCAACATGACCTTCACAAAGACGTCACAGAAGTTCGGCCAATGGGCCGACAGCCGCGCAAACACCGTGTTCGGTCTCGGGTTCGCCTCTGAACAGCAGCTGTCCAAGTTTGCTGAAAAGTTCCAGGAAGTGAAGGATGCGGCTAAAATGGCAAGAGAGAAATCACAGGAGAAAACAGATGCAGCCAGCATCCACTCACAGGAATCTGGCCGCGAGACTCCACTGTCCAATCAGGCGTCGAGTATGAATGGTACAGACGATGACAAAATCTCACACCCACCTGATAACACGGTGCTGATGAGTGAGAACAACCGACTGAAGTCTGCTGTGGagcagagtaCTAACCAGTATGAGTCGGAGCTGCAGGCTCTGAAGGAGAGTAACGCTCGGCTGATGGAGGCTCTGCAGGAGGCAAACAGCAGTGTGGAGAAgtggaaaacacacaccagcGCATGCCAGGAGGAGAACACCACACTCAAGAacaagattgcAGACCTGGAGGCGGTGTGTAAAGAGGTGAatcaggagaaagagagaaacgcTCAGCTCAGTACCCGAGTGCAGAAACTTGAGAACGAAATAAAGGACAAAgagcaggagCTTGAGAATCTGAGGAAGCAGGCTGAGATAATTCCACAGCTCATGTCCGAATGTGACAACCTCAACGCCAAGCTACAGGCGGCGGAGCTGGCCAATCAGGAGGCTCGTGGGCGTGTGTCAGCGCTGCAGAGTGAGGTGAGTGAAGGACAGCAAAGACAAGGAGCCATGAAGAAAGAGCTGAAGAAGTTCATGGAGCTTCTGGAGGGCAAGATAGACGAACTGCACGAAGTCCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGGACAactaacacagacacacacacacacacacacacacacagacacacacacacacagacacacacacacacagacacacacacacaccacacacacaccccaagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacacacacacacacacacacacacacacacacacaccccccgaGTTCGCCAGGGACTGTCTCACCCGGACATGGACAActaactcactctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacagaatccgCCAGAGACTGTCTCACCCAGACATGGAcaactgactcacacacacactctctctctctctcttacacacacaatatagcATCTCAATATCTAGGGAGTGACAGCCATAAATCCTTATATTACAATATTGTatgtaatataacataataatgtacttatatctcacacacacacacacacacacac
>XM_034305122.1
GAGTCCCGGAGTCGCACCGCAGCCATGTCGGGGAGCGCGAGCACGAGCGCGAGCACAGCGTGAGGCTTCCACCTGAGCGTTCAGTCCACCTGTTAAAGGAGACCTTTCATTTCTTATCACCTAATTACCGGCCGGATCGCAGCGCGCGCGCCTCcagaccccacacacacaccagccaagtttgtttttttattattattattattattattaataatattattttaaacatttcatctCAAGTGTGGAGAAAAAGGCAACACCTTCAGACTCATggagcAGCCGATCTTCACCACTCGAGCTCATGTCTTCCAGATCGATCCCACCACCAAGAAGAACTGGGTTCCTGCCAGTAAACAAGCCGTCACCGTGTCCTACTTTTACGACAGCACTCGCAACAGCTATCGCATCATCAGCGTGGacgggtcaaaggtgatcATAAACAGCACCATCACCCCCAACATGACCTTCACAAAGACGTCACAGAAGTTCGGCCAATGGGCCGACAGCCGCGCAAACACCGTGTTCGGTCTCGGGTTCGCCTCTGAACAGCAGCTGTCCAAGTTTGCTGAAAAGTTCCAGGAAGTGAAGGATGCGGCTAAAATGGCAAGAGAGAAATCACAGGAGAAAACAGATGCAGCCAGCATCCACTCACAGGAATCTGGCCGCGAGACTCCACTGTCCAATCAGGCGTCGAGTATGAATGGTACAGACGATGACAAAATCTCACACCCACCTGATAACACGGTGCTGATGAGTGAGAACAACCGACTGAAGTCTGCTGTGGagcagagtaCTAACCAGTATGAGTCGGAGCTGCAGGCTCTGAAGGAGAGTAACGCTCGGCTGATGGAGGCTCTGCAGGAGGCAAACAGCAGTGTGGAGAAgtggaaaacacacaccagcGCATGCCAGGAGGAGAACACCACACTCAAGAacaagattgcAGACCTGGAGGCGGTGTGTAAAGAGGTGAatcaggagaaagagagaaacgcTCAGCTCAGTACCCGAGTGCAGAAACTTGAGAACGAAATAAAGGACAAAgagcaggagCTTGAGAATCTGAGGAAGCAGGCTGAGATAATTCCACAGCTCATGTCCGAATGTGACAACCTCAACGCCAAGCTACAGGCGGCGGAGCTGGCCAATCAGGAGGCTCGTGGGCGTGTGTCAGCGCTGCAGAGTGAGGTGAGTGAAGGACAGCAAAGACAAGGAGCCATGAAGAAAGAGCTGAAGAAGTTCATGGAGCTTCTGGAGGGCAAGATAGACGAACTGCACGAAGTCCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacacacacacacacacacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGGACAactaacacagacacacacacacacacacacacacacagacacacacacacacagacacacacacacacagacacacacacacaccacacacacaccccaagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacacacacacacacacacacacacacacacacacaccccccgaGTTCGCCAGGGACTGTCTCACCCGGACATGGACAActaactcactctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacagaatccgCCAGAGACTGTCTCACCCAGACATGGAcaactgactcacacacacactctctctctctctcttacacacacaatatagcATCTCAATATCTAGGGAGTGACAGCCATAAATCCTTATATTACAATATTGTatgtaatataacataataatgtacttatatctcacacacacacacacacacacac

Function

symbol description
homer2 Predicted to enable G protein-coupled glutamate receptor binding activity. Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in synapse. Is expressed in musculature system; periderm; and somite. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 68. Orthologous to human HOMER2 (homer scaffold protein 2).

NR:

description
PREDICTED: homer protein homolog 2

GO: NA

KEGG:

id description
K15010 HOMER; homer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305120.1 False 2148 mRNA 0.52 9 1056705 1074007
XM_034305121.1 False 2057 mRNA 0.52 10 1056705 1074009
XM_034305122.1 True 2154 mRNA 0.51 9 1056705 1074903

Neighbor

gene id symbol gene type direction distance location
LOC117597537 fsd2 coding downstream 438 1034949 ~ 1056267 (-)
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 356928 695169 ~ 699777 (-)
LOC113534387 NA coding downstream 396151 523454 ~ 660554 (-)
LOC113534440 LOC108264511 coding downstream 809395 238677 ~ 247310 (-)
tnfaip8l3 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 coding downstream 833321 198973 ~ 223384 (-)
LOC113526880 NA coding upstream 7793 1082696 ~ 1085313 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding upstream 29048 1103951 ~ 1116054 (-)
bnc1 bnc1,LOC106591559 coding upstream 50728 1125631 ~ 1149797 (-)
spata5l1 spata5l1 coding upstream 152704 1227607 ~ 1234626 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding upstream 219149 1294052 ~ 1314655 (-)
G92359 NA non-coding downstream 40523 1014447 ~ 1016182 (-)
G92343 NA non-coding downstream 72184 982501 ~ 984521 (-)
G92282 LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478 non-coding downstream 80156 931958 ~ 976549 (-)
G92338 NA non-coding downstream 93495 962489 ~ 963210 (-)
G92321 NA non-coding downstream 141777 911310 ~ 914928 (-)
G92294 NA non-coding upstream 74636 1149539 ~ 1216437 (-)
G92412 NA non-coding upstream 213798 1288701 ~ 1295898 (-)
G92421 NA non-coding upstream 261988 1336891 ~ 1341381 (-)
G92415 NA non-coding upstream 269647 1344550 ~ 1344828 (-)
G92413 secisbp2l non-coding upstream 276303 1351206 ~ 1354977 (-)
G92340 NA other downstream 67649 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 209770 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 254493 782910 ~ 802212 (-)
G92240 NA other downstream 309175 706750 ~ 747530 (-)
dmxl2 dmxl2 other downstream 732765 266207 ~ 323940 (-)
bloc1s6 bloc1s6 other upstream 122232 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 147818 1222721 ~ 1226351 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 440835 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 536908 1611811 ~ 1648286 (-)
G92531 NA other upstream 693502 1768405 ~ 1768795 (-)

Expression


Co-expression Network