LOC113534715 (arhgef26,LOC102799329)


Basic Information

Item Value
gene id LOC113534715
gene name arhgef26,LOC102799329
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4785197 ~ 4841034 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305132.1
GCGCGGGTGCACGAGGCTCCTCCGCACAGAGCTGCGCGCGAGGATGTGGAGTAAACACAGTGGACTCTGCTGAATTGGGGATCATTAGCGTTGAGTTTTTTAAAGCACCAGCAGCACTTACACACAGGGAGGATACTACCCGAGCTGCACGCTGAAACAGGATTATGAGCTGATCTGAGCTACGGGtgctgctttaaaaaagaaaaaaagtgcactTAAAGTGACCTTGCTATGGATTTTAGCAACGAAGTCGATctttccaacaacaacaacatgagCAGCAACATCATCGCTCCTCTGTGGAAGAAGCGTGCCACGGACCAGGTCTCGAATGGCAACCTGAAGCCCAAACCAAGACCTTTGAGTTATCAGATTGACGGTGTCCTTATGACTGATTTCCCCGTGGAGGACAAGTGCTCTTTCACCCtcacacaacctgcagagacGATCACCACTCCACAAGGAACCATGGTGATCAAACATGTTTTGAACAAACCTGCCCGTAAGACTCGTGTTGTAAGGAGCATTAGCATTGGGCATCTATCCAGTGCAAGCTTTTCTCTGGCTAGGTTCAGATCAGAGAATAATAATGACTCTGTGGACAGTAACCAGGTGCCTAAAACCAGCCTATCTACAAAAACTGCAAATGGCTTGAGCAAAAATGAGACCAAAAGAGATCATGATCCTCTAAAGCGCCTGTCCAACCCATTTACCCTCATCTCCCAGAGGGAGCAGATTGTTTTTGGGGACTCGTCCCCAATATCAGATAAGCAAACCCCACAGAAATCTAGCTCTCCCTCCTGGAATTCCCCTCAGCAGCTCTCTTCTCCAGTTGCTCTTCAAACTTcttcatctcacagctccatgtcCAGCATGCCTTCCCTCTCTTCTtgttcttcctcctcctcctccgttCCCAGCACACCATCCGAGCCCTTTACCCCTCAATCTCTGTCTCCATCCGAAGACAGCACAGTAACTCCAGTTTCACGCCGGTCCTCAAGCTCTTCCCAGGGGTCGGAAGTCAAGTCACCTCTTCCCAGCATGGTCCTCAGTACGCACAGCCCCGCTGCATTGAAGATGGGCACCCAGCAGCTCATTCCTCACAACCTGGCATctgaaaaaagaccaggcaaaATCAGCCAATCTGGGGGACTGCTAGACCCTTCCAAACGTTCCCAGCGTGCCCGCAGCATGGTGGAGAGTGGCTCCTTCTTCTCCAGCAGTAAGGATGTTGAAGAGACGGAGGATGCGCCAGGGCTGTTCAGGAGGGGTCTAAGGTCCACGTCATACCGCCGGGCTGTGGTCAGTGGTGTAGATCTGGACGTCCCTTCTAACCTCTTAAAAGGGGTCGCAGAGCTGAAAGAAGGATCCAGGAGTCCACGACCCACCAAAAGCAAGAgtggagagaagaagaagaagaaactacAGACCCAGAGGACATTTGACAGTGAAGAAGATGAGGTTCTGTATCAGAATTACCAGGAGAAGGCACTGCACAATGACTCGGATGAGGATGCTGAGTCTAGAGAGCCCAAAGCAGACGAGCACATCGTGGTGCAGTACAAACCCATCCGGACGTCCTGGAGTCAGCTCAGTGTGGTTAAAAAAAGTGGAGTGTGTGACAGGCTGAGCCAAGAGGAACGCAAGAGACAAGAGGCGATATTCGAGGTGATCTCATCAGAGCACAGCTACCTGCACAGCCTCATGATCCTCATCCGCCTGTTCAAGAACTCGCCAGAACTCAGCGACACCATGACCAAGACGGACCACCACCACCTCTTCTCCAACATCGTGGATGTGTGTGAGGCCAGTAAAAAGTTTTTTAAGGAACTGGAGGACAGACACCAGCAGAATATCGTGATCGATGACATCAGCGATATTGTGATCAGACACGCCCAGGCAAACTTCGAACCCTACGTGACATACTGCTCGAATGAAGTGTACCAGCAAAGAACATTCCAGAGACTAGCAAATAAGAGCCCGACCTTTAAGGAGGTTCTGTCGCGGATTGAAGCTCACCCGGATTGCCGAAACCTTCCCATGATCTCTTTCCTGATTCTGCCCATGCAGAGAGTCACCAGGCTTCCTTTACTCATGGATACTATTTGTCAGAAAACACCTAAAGACTCTCCTCAGTATGACGCATGCAAGAAAACTCTTCAGTCCGTCAGCAAGCTTGTACGGAAGTGTAATGAAGGCGCTCGTACAATGGAACGGACGGAGATGATGTACACCATCAACTCTCAGCTGGAGTTTAAGATTAAGccgtTCCCGCTGGTGTCGTCCTCTCGCTGGATGGTGAAGCGTGGTGAGCTCACGGCCTACGTTGAAGAGAGCGGGATCTTCTCCAGGAAGACGACACGGCATCAGGTCTACTTCTTCCTCTTCAATGATGTCCTCATCGTCACCCGCaagaagagtgaagaGAGTTATACGGTGATAGACTACGCTCTGAGGGATCAGATCTGGGTGGGGCCGTGCCAGCTGGAGGATCTGAACCTCTCGCCAACACGCACCACCTCAGGCATGCTGACATCACGGCAGGTCGGAGCCAATCACCTGTTCCACCTCAAATTCCGCAGCAACCACTCAGGAGACAAAGTGCCCatgatcctgggggcggagcttctTAATGAGCGTGCTCGCTGGATCAGTGCACTGGGACACACTAACAATGAGAAGAGGAACGCAGACAGAACAAattcCATGCAGGTGGAGGTGATTCGTACGTACACGGCTCGGCAGCCTGATGAACTCTCGCTGCAGGTGGCAGACGTTGTAATCGTCTCACAGACAGTGGATGATGGTTGGTACGAGGGCGAGCGATtaagagacggagagagaggcTGGTTCCTCGCCGAGTGTGCTCAGCCAATCACCTGCCAGGCCACCATTGAGAAGAACATGCAGAGGATGGACCGCCTCCAGGGCCTGGAGACCAACGTTTGAGCGGGATTCTCTACAGTTCctccctaaacacacacacacacacacttacagagaGAACGCTGGCCTGAGGCTCACTGCGAGATGATGTTATTGATTACTGGGACTTGATCGTGGAGCTCCTCATAGGAGCGAGCAGAGACTTCTAATAAAATCTCGACAGGACTGGAGACCGGTTCTTGGAAGAACATGTGGATAAACCAATGCGGTTCCAGGAGGAACGGTTAGAGATTCTTTAAACTCACTCTAGCACAGGGGTGTCAAACATACAGCCCGAGACCTGGCCTGGCTCTAATCTGGCACACTGAATGAATTTAGTCTAAATGAAAATCACTTTCTGGACTGCAGATGAATTGAAAGATTGAAAAAAGagtctgttattccactagggggcagaatAGAGtaataaactcagctactgacaaaaAGTGCCAATGATTCTTTATTCACAAACtaaaaaatagattttgaaCTAATTttggggtttcacagcaatgggggtgaatactatTGCACactaatacttttttatttgtatataattttgcaaactatatttattttcactccATTTCAATATTCTGGGGTAATTTATGTAGATTCAGGACATACAATCCTAATGAAGTCTAaatcagttccaggttgtaacaatacaaattgtggaaaaattcagggggggtgaatacttacgcaaggcACTGAAGACGTTCAGAAGGAACTGCTCGATGTGTTATTGGTCACTTTTTCCATCTGTCCCACTTccctaaaatgagtttgacacccctgagCTAGCACACGTGATCTCAGACCAGCTTAACGTCCAAGGACTGTACAGCAACCAGAAGATTCCGGATTGATGTTCCTCACCCAAAAATGCTAACCTGACTAATGCTGAATCACCGCCAGCAAAAGCTAATCACCATCACACAGCTCAAGATCCTGTTAAATGCTCCTGCTGGCTTTCATTCACTGTTGGTTATGTAAGCATTCATTGCACTTGCCATGTCAATAAGCTTTTCATTTCcataacacaacacagcagAAACAGCACAAAGGACAGTTTTACCTTCACAACTCTGCAtgtgtgtcagtcagtctgtaTATAAGCAAGTTGTAAATAAATCATGAGAAGATTTAAGGGCTCAGGGAAGGTTTGTAgtttaaaagtataaatatatgtatatacactcaaCCTATGAAAGGCTCGAGTGGCGTACTTAACCAACAGCAATTTGCATAAATTGTCAGGAGCTCGGAGCAGGACGATGAGCTGCATGGTGTATAAATCTCTTACATAACGGCTTTTATCTTCCTAAAGATCAAACGCTGCACTTCAGCTCTCTGTTTATCAAACTGGAAAATATGCAGACTTTCATGTGGTTCAAAAAGTGACGCTGGTTCAGATGGATTTGTCACTGAAGATACAGAATGcagcttcagaaaaaaaaaaaagggattttaaaatgaaggaaTGTTTCGGTCTGAAACGAGACGCTTTTCAATCAGATTTGGGGCAGAACTGGGGCTCAGGGAGAAGAAACACACGCTATGAATGGTTTGTAAATCTAATGTAAATACTGTATCAGATATAACCTCAGTGTGATCCTGTAACTAATCAACAAACGTATATATTCCATAAAGGTTTGGGTTTGTTTCA

Function

symbol description
arhgef26 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity. Predicted to act upstream of or within endothelial cell morphogenesis and ruffle assembly. Predicted to be located in cytosol.

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 26

GO: NA

KEGG:

id description
K13744 ARHGEF26, SGEF; Rho guanine nucleotide exchange factor 26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305132.1 True 4606 mRNA 0.47 16 4785197 4841034

Neighbor

gene id symbol gene type direction distance location
LOC113534432 mme,LOC107548962,LOC107695447 coding downstream 107837 4642261 ~ 4677360 (-)
LOC113534774 LOC108263974,LOC108263992,LOC108434102,LOC108437989 coding downstream 150440 4630852 ~ 4634757 (-)
LOC113534721 LOC108264207,LOC108264093,LOC108264205,LOC108264095,LOC108264099,LOC108264096,LOC108264094,LOC108264212,LOC108264097,LOC108264203 coding downstream 182236 4597574 ~ 4602961 (-)
LOC113534722 LOC108264093,LOC108264207,LOC108264095,LOC108264205,LOC108264099,LOC108264096,LOC108264094,LOC108264212,LOC108264097,LOC108434099 coding downstream 191162 4589186 ~ 4594035 (-)
LOC117597542 LOC108264205,LOC108264203,LOC108264208,LOC108264204,LOC108264207,LOC108264095,LOC108264093,LOC108264094,LOC108264097,LOC108264096 coding downstream 207625 4569303 ~ 4577572 (-)
LOC113534489 rap2b coding upstream 87306 4928340 ~ 4930720 (-)
p2ry1 p2ry1,LOC102799884 coding upstream 131974 4973008 ~ 4976264 (-)
LOC113534806 NA coding upstream 244240 5085274 ~ 5107393 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 513587 5354621 ~ 5372127 (-)
larp6a larp6,LOC107665376 coding upstream 568533 5409567 ~ 5414923 (-)
G93896 NA non-coding downstream 66 4783925 ~ 4785131 (-)
G93753 NA non-coding downstream 238492 4546439 ~ 4546705 (-)
LOC117597614 NA non-coding downstream 553366 4231460 ~ 4231831 (-)
G93716 NA non-coding downstream 601204 4183755 ~ 4183993 (-)
G93710 NA non-coding downstream 612885 4172073 ~ 4172312 (-)
G93926 NA non-coding upstream 52552 4893586 ~ 4894074 (-)
LOC117597587 NA non-coding upstream 125600 4966634 ~ 4971603 (-)
G93988 NA non-coding upstream 166391 5007425 ~ 5011433 (-)
G94010 NA non-coding upstream 235106 5076140 ~ 5179801 (-)
G94045 LOC108264453 non-coding upstream 278994 5120028 ~ 5126327 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 564590 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 611603 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 711664 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 1236446 3425718 ~ 3548751 (-)
G93047 NA other downstream 2016899 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 798662 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 872809 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1356209 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2305466 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2597057 7438091 ~ 7694427 (-)

Expression


Co-expression Network