LOC113526366 (LOC108264060,LOC108430275)


Basic Information

Item Value
gene id LOC113526366
gene name LOC108264060,LOC108430275
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25839470 ~ 25870271 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305190.1
TATAATCCGCGGGGATTAGGAGCTCCAGCAGTGCTGTAGGTGGTTGGATGTACTTCAGTCCATGGTGGAGTTGGGGAAGCGCAGCGCGCGGAGCTTCTCTCCAACATGATGCACGGATACAGAGCGaCTCCAGTCTCCAACAGTACCCTGTCTTTCTGTGGTACTGATAACTCCTCTGCCTATAAGGTGGATAATGGGCTTCTGAATAACGGCTGTTTCCTGGATGCTCTGGGGCTTGTGCCACACGTCTTCCTCCTCTTCAGCACTTTCCCCATCCTCTTCATTGGTTGGGGCAGCCAGAGCTCTAAGGTTCATATCCATCACAGCACATGGCTGCATTTCCCTGGCCATAACCTGCGCTGGTTGCTCACAGCTGCTCTGTTGTTTGTGCTGGTGTGTGAGGTCGCTGAGGGGATTGTCTCAGATGGGTTTAACCAGTCCCGCCATCTTCATCTTTATATGCCTGCTGGACTTGGCATTCTGGCAGCTATAACCTCCATAGTCTACTACCACAACATAGAGACCTCCAACTTTCCCAAACTTCTGTTAGCTCTGCTCATCTACTGGATTTTGGCCTTTGTCACCAAAACCATCAAGTTCACTAAGTACGATGAACACGGAATCGGCCTGGGGCAGCTGAGCTTCTGCATCACAGGCTTGCTGGCTTTAATCTACGGCCTGCTGCTGACCGTGGAGATCAGCGTTATACTGCGCAGGCGCTACATATTCTTCCCACACCCGACTGAAGTGAAGCCTCCTGAGGACCTGCAGGACCTTGGTGTGCGTTTCCTTCAGCCATTCGTCAACCTGCTGTCCAAGAGCACATATTGGTGGATGAACACATTTATCACATCGGCTCACAAACGGCCCATCCACCTGAAAACCATCGGCAAGCTGCCCATAGCTATGAGAGCGCTCACCAACTACCAGAAGCTACGCAAAGCCTTCAGTGCACAGAAGgagCGAGGCATGATCCCTGCACGAAGCCCACGATCGATTTGGTACGCTCTGAGGCAGGCGTTTGGAGGCCCTCTGCTCCTCAGCATCACTCACCGCTTCCTGGCCGACCTGCTGGGCTTCACTGGGCCACTCTGCATCTCCGGCATCGTCCACCACATCAGCCGAGATAATCACACCATCAAGCCACCGgtcaAGCTGCTAGGCATCCACTTCATTTCCTCTCAGGCATTTTTAGCGAATGCCTATGTGTTGGCAGTGCTGTTTTTCCTAGCTCTGCTCCTTCAAAGGACATTCCTACAGGCTTCCTACTACGCCGCCATGGAGACCGGCATTAAAATCAGGGGAGCCATCCAGtgtaAGATCTACAATAAGATCATGTGCCTGAGTACCTCCAACATGTCCATGGGAGACATGACCATCTCTCAGATCTGTAATCTGGTGGCCAGAGACACGGAGCAGCTCATGTGGTTCTTCTTTCTGTGTCCCAACCTGTGTGCCATGCCAGTGCAGATCACTATTGGCGTGATCTTGCTATACTACTTACTGGGGATCAGTGCTCTGATTGGAGCTGCAGTGATCGCCATTCTCGCCCCGATGCAATACTTCGTGGCCACACAGCTTTCACGAACTCAGAAAAGCACACTGgagtACTCCAGTGAGAGACTGAAGAAGACTAATGAGATGTTGAGAGGCATTAAGCTGCTGAAATTATATGCCTGGGAGCACATCTTTAGATCCAGTGTGGAGGAGACGAGAAAAAAAGAGCTGACCAGCCTCCGAGCCTTCGCCCTGTACACATCACTCTCAATTTTCATTAATGCAGCCATTCCCATCGCAGCGGTTCTTACAACATTTGTAGTACATGCCTATGTACACAGCTCTACAgacactcctctctctcctgctgtgGCATTtgcttctctctcactctttcacatCTTGGTCACGCCCCTCTTCCTGCTTTCTAGTGTACTACACTCAACTGTTAAGGCACTTGTAAGTGTGCAGAAACTTAGCGAATTCTTTGCTAGTGAAGAGATTGAACTTGATCAAGAACCCAAGACCCCCACCCCAACTGATACAAGCAACCACAGTAACATAAATTCAGTTTACATGCTGCAGCTCCAGGCCTCAAAGCTGGTTAACCGGAAGAACAAAGCCAAACAGGACAAGAACAGTAAGATACCACAGCAGGATCCGAACCTGAACATGTCTATTGTAAATGAGGAGAATATCTGTCTCAAGatcGTGAATGGCTACTTCACCTGGACTCAGGGATGTCCCACTCTGACCAACATTGACATAAAGGTTCCTTTTGgtgCGTTGACTATGATTGTAGGACAGGTAGGATGTGGAAAATCCTCCCTACTGTTAGCTGCTCTGGGAGAAATGCAGAAGATCTCAGGAAGTGTCACATGGAACAAATTACCAGatcaggaagaggaagagaataaCAGGTTGCTTGTTAATCACGTTACTGGTCCAAAAGCACCCGAGAAGAGAGCTTCGGTGGCCTACGCTTCTCAGAGGCCATGGCTCCTCAATGCCACAGTGGAGGAGAACATCTTGTTCGACATGGCCCCTAACAAGAAAAGGTATGCAGAAGTGATCGAGGCATGCCAGCTTCAGCCTGATATCGACACACTTCCCCAAGGAGACCAAACCGTGGTTGGAGAAAgggGCATTATTCTGTCTGGCGGGCAGCGGCAGCGCATCAGTGTAGCCAGAGCTCTTTATCAGCAAACTAAAGTGGTGTTTCTGGATGACCCATTCTCAGCTCTGGACATCCACTTGAGTGACCACCTGATGCTGGAAGGAATTCTGAAGTTCCTCAGACAGGAGAGAAGGACGGTGGTTCTGGTCACACATAAACTGCAGTACTTACCACATGCAGACTGGATCATAGCCATGAAGGATGGGACAGTCCAGACACAAGGCACCTTAAAGGATATCCAGTGTGCTGAGCCTGAACTGTTTGAACACTGGAAAACCCTGATGAACAGACAAGACAAGGAGAACGCTGTGGAGCTGAAGAGGAAGAGTTTCCGGAGGATGTACTCCAGAGACACACTTGCTAcagaggatgaggatgaagATGGTTCCCTGTGTACAGATGAGGACAGCCTGACAGTTGAATTGCATCAGAGGAACACAATGCTATGGGGCTCATTGGGGACATACCTGCGAACAGCTGGCCTCCTGCTGCTTCCACTGCTCATCCTGTCACAGCTCACCAAACACTCACTCATGCTGGCGATAGACTACTGGCTCGCCCACTGGACGTCTCAGGCCATCACAGCTCGGAACTGCACATCTGCACAGGACTGTGTGCAGAGTCATTCTCTGTACCCGCGGGTGTTCTGTATCTTGTGTTTTCTGGGTATCGTGTTATGTTTGATCACCTCTCTGGCCGTGGAGTGGATGGGACTCCGGGTCGCTCAGGAGCTCCACTGCAGTCTTCTCCGTATCATCATCCTCGCTCCGATGAGGTTGTTTGAAACGACTCCTCTTGGGAATATTCTTAACCGATTCTCTGGTGACATCAACATCATTGATCAGCATATCCCGGTTACCATGGAGTGTTTGATCCGCTCcactctgctgtgtgtgtcgGCGGTGGGTGTTATATCCTACATCACCCCAGTCTTCCTCATCGCTCTGCTCCCACTGGCCATCATCTGCTACTTCATTCAGAAGTACTTCCGGGTGGCATCCAGggATCTGCAGCAGTTAGAGGACAGCACCCAGATCCCCCTGCTGTCCCACTACTCAGTGACTGTAGAGGGTCTCACCACCATCAGAGCCTTCAgACACGAACAAAGATTTAAGAAGAGACTTTTGGAATACACAGATGCCAATAACATCGCCTCACTCTTTCTCACAGCAGCCAATCGCTGGCTCGAAGTTCGCATGGAGTACATCGGGGCGTTTGTGGTGCTGATAGCTGCCGTGGCGTCCATCAGCAATGCCCTGTACAGTGAGCTCTCCGCTGGATTAGTGGGTCTGGGCCTCACATATGCTCTCATGGTGTCGAACTACCTGAACTGGATGGTGCGTAACCTGGCTGATATGGAGGTGCAGCTCGGCTGTGTGAAGAGGATCAGCAGTCTGCTCACCACAGAGTCTGAGAACTACAATGGAGAAATGACTCCAGCCCAGGTTCCAGCAGGTTGGCCCAAATATGGCGAGATCCAAATAAAGAACCTGAGCGTGAGATATGATAGCAGCTTAAAACCCGTCCTAAAGCGTGtcaatgctcacatcaaacctGGACAAAAGGTGGGGATATGTGGACGAACAGGAAGTGGAAAGTCTTCCTTCTCCTTGGCTCTTTTCCGAATGGTTAACACGTGCGAGGGTCGAATTATTATTGATGGGATTGATATTGCTAAATTGCCTCTTCAAACCCTGCGCTCCAAATTTTCCATCATTCTTCAGGACCCCATTGTATTCAGTGGAACAATTCGatttaatCTGGATCCAGAGAAGGCCACTGACCGGATGCTGTGGGAAGCTCTGAATATCGCTCAGCTCACACCCGTGGTGGAAGCTTTACCTGGAGGACTAGATGCCATGGTGACGGAGGGAGGAGAAAACTTCAGCCAGGGGCAGCGGCAGCTCTTCTGTCTGGCCCGAGCGTTTGTGAGGAAGAGCAGCATCCTGATCATGGATGAAGCCACAGCGTCTATCGACATGGCCACTGAGAACATTCTACAAAAAGTGGTTATGACTGCTTTTGCAGATCGGACGGTTGTAAACATTGCTCATCGTGTGCACACCATCCTGGGCTCAGACGTGGTCATCGTGATGAAGCGTGGAGCCATTCTGGAATACGACAGACCCGACGTCCTGCTGGAGCAGAAAGACAGTGTCTTCTATTCTTTCGTCAGAGCAGACAAGTGAGAAAGGCAAGGAGGAGTGTGCATGTCATGAGCAGGGCAGGACAAAGGGATTTTACTATGATctgtatataatttgtaaatgtttaattactGACAGATAATATGAACCTTGGAACCAATAATAAACCTTTCAAATGGTTCCAATATAAAACCAGTTTCCTACAAAACTCTCCAATAAAGAACTCTTTAATCATTACTTCACTTTTACTGTTACTGTCGCTATGAATTGCTAGTAGAAATGACGTGAACAACACAGGAATtagtgacattttaaatattttattagggTATAATTTGCAgag

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family C member 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305190.1 True 5164 mRNA 0.49 41 25839470 25870271

Neighbor

gene id symbol gene type direction distance location
LOC113526369 LOC108264860 coding downstream 492506 25344225 ~ 25346964 (-)
LOC113526534 NA coding downstream 519777 25304736 ~ 25319693 (-)
LOC117597607 NA coding downstream 538057 25295458 ~ 25301413 (-)
rasgrp4 LOC108264291,LOC108428524 coding downstream 657363 25155182 ~ 25182107 (-)
ppp1r13l ppp1r13l coding downstream 704214 25106429 ~ 25135256 (-)
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding upstream 20028 25890299 ~ 25905340 (-)
cd276 cd276 coding upstream 323779 26194050 ~ 26292607 (-)
zgc:158464 LOC108264397 coding upstream 454110 26324381 ~ 26464945 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding upstream 645250 26515521 ~ 26532135 (-)
rec114 rec114 coding upstream 796996 26667267 ~ 26691735 (-)
G105092 NA non-coding downstream 3432 25833279 ~ 25836038 (-)
G104750 NA non-coding downstream 594226 25243472 ~ 25245244 (-)
G104747 NA non-coding downstream 597700 25239110 ~ 25241770 (-)
LOC117597583 NA non-coding downstream 624680 25192057 ~ 25214790 (-)
G104694 hnrnpul1 non-coding downstream 688314 25113977 ~ 25151156 (-)
G105219 NA non-coding upstream 217209 26087480 ~ 26087695 (-)
G105379 NA non-coding upstream 449761 26320032 ~ 26320770 (-)
G105608 NA non-coding upstream 873432 26743703 ~ 26743960 (-)
G105611 NA non-coding upstream 875848 26746119 ~ 26746339 (-)
G105634 LOC108263998 non-coding upstream 917669 26787940 ~ 26788856 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 290542 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 759958 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 1075309 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 1128102 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 1177492 24631639 ~ 24661978 (-)
G105376 NA other upstream 369059 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 698814 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 1274617 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 3750528 29620799 ~ 29714001 (-)
G107525 NA other upstream 4473260 30343531 ~ 30344876 (-)

Expression


Co-expression Network