LOC113534766 (mapk6,LOC107747613,LOC107550634,LOC107704268,LOC107700590,LOC107588533)


Basic Information

Item Value
gene id LOC113534766
gene name mapk6,LOC107747613,LOC107550634,LOC107704268,LOC107700590,LOC107588533
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6409 ~ 19569 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305310.1
cacacacacacacacacacatgaacacgcTGAACTGAACTAAACACTTGTGTACCGGACTTTCTCTCCTAAACACGCTGGATATTAACACTGAACATTTTGGACTTTTTATGgattaaacactgaacatgaaGCTTAAGGGGACACTGGACTCTTTCAGACCtgGAAACCCCGCTGTAAAATGGAGGATAGCTTCGATTGCGACTGCGGTGAGCTCGAGCCACCCGATCACTGAGGGAGAGCGTTAGTGCTGAGCTCGGCCGACCTCCCCGCTCCTCTCCtcacctctcctctcctcacctCTCCTCACGCAATCAGACCAGACGGTGCTCAGTTTATCACGTTAGGATCGTAATGCTGCTGCCGCTCAGGAACAGTCGTACACTGAACGCATCGGCGCTGTGaggatgctgctgctgctggtacTCGCTTTCACACGAGCATTTCATCACTGATCACACGTCCATTCCGTTACACACAGTCTGGGGCTGAACAGGAAGACtagagtttaaaaagaaaaaataaataaattaaaaacccaCAGGCCTGTTTTCTGTTTCGATAATCAACACGCTCTGAGCCGCGGAGAGCGCGCTGTGAGGACTCGGAAttcctttctgtttatttgggaagttttgttgttgttgttttgtttttgttttttttcccccgaagAGGAATATCTCTGTGCAGTAAATAAATCTCGTCGCTCAAACAGCGtctgttataaataaaaaaacctcaaatatttataatttctaaAGAGAGAAGATAAAATCCATCTCTGAATCCTTCtgtggtgctgttatataaaatggcGGAGAAGTTCGAGAGCCTGATGAACATCCACGGTTTCGATCTGGGCCCCCGGTACACGGACCTGAAGCCGCTCGGGTACGGCGGGAACGGCCTGGTGTTCTCGGCCGTGGACCGGGACTGCGACAAGCGCGTGGCCGTGAAGAAGATCGTCCTGACGGACGCGCAGAGCGTCAAGCACGCGCTGCGAGAGATCAAAATCATCCGCCGCCTCGACCACGACAACATCGTGCGCGTGTTCGAGACGCTGGGGCCGAGCGGGCGGCGTCTGAGCGAAGACGCCAGCTCTCTGACCGAAGTGAACTCGGTCTACATCGTGCAGGAGTACGTGGAGACGGACCTGTGCACCGTGCTGGATCAGGGCCCGCTCTCCGAGGAGCACGCACGCCTGTTCGTCTACCAGCTGCTGCGCGGACTCAAGTACATCCACTCGGCCAACGTCCTGCACCGAGACCTCAAACCCGCCAACCTGTTCGTCAACACCGAGGACCTGGTGCTCAAGATCGGAGACTTCGGCCTGGCGCGCATCATGGACCCGCACTACTCGCACAAG

Function

symbol description
mapk6 Predicted to enable MAP kinase activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; otic vesicle; and pectoral fin. Orthologous to human MAPK6 (mitogen-activated protein kinase 6).

NR:

description
PREDICTED: mitogen-activated protein kinase 6

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305310.1 True 1368 mRNA 0.53 2 6409 19569

Neighbor

gene id symbol gene type direction distance location
leo1 leo1,LOC102793363 coding upstream 31844 51413 ~ 60361 (-)
scg3 scg3,LOC107700587,LOC107550625,LOC107588544 coding upstream 96994 116563 ~ 136463 (-)
LOC113534665 NA coding upstream 120701 140270 ~ 141515 (-)
LOC117597506 NA coding upstream 134498 154067 ~ 155144 (-)
LOC117597586 NA coding upstream 157544 177113 ~ 177644 (-)
G91752 NA non-coding upstream 34159 53728 ~ 63274 (-)
G91764 NA non-coding upstream 64726 84295 ~ 85545 (-)
G91786 LOC108237865,LOC106563385,LOC106560410,LOC106599233,LOC106566551,LOC106561221,LOC106564134,LOC106572279 non-coding upstream 163965 183534 ~ 183796 (-)
G91873 NA non-coding upstream 278978 298547 ~ 299097 (-)
G92197 NA non-coding upstream 373463 393032 ~ 395264 (-)
LOC113534658 NA other upstream 123856 143425 ~ 144961 (-)
dmxl2 dmxl2 other upstream 246638 266207 ~ 323940 (-)
G92240 NA other upstream 687181 706750 ~ 747530 (-)
usp8 LOC107665382,LOC107595392 other upstream 763341 782910 ~ 802212 (-)
slc27a2a LOC108264486 other upstream 815547 835116 ~ 846935 (-)

Expression


Co-expression Network