spata5l1 (spata5l1)


Basic Information

Item Value
gene id spata5l1
gene name spata5l1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1227607 ~ 1234626 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305319.1
CGGGGCTTGTCGCAGTGCCAGTGGTGTCCATGCTGTAAAGTGGAGCAGggagataaaataaaaataaacacgtgtaaatattaatatataaatataaatataataaagcgGAGTGTGCTGACGCTCCAGCGCTCCGGTTCAGGTTCCGGTTCCAGTTCCGGTTCCGGTTCCGGTTCAGGTTCCGGTTCCGGTTCAGGTTCCAGTCCCGGTCGGAGCGATGCCGCAGGATGTGGCGGTTCTCCCGCCGGAGCGCTCGGACCTCGGGACGCAGCGGTGCCGTCTGGGCCCAGCGGTGATGGAGGATCTGGGTCTGCGTCTCGGGTCTCCGGTGCTGGTGACGCTGCCGGGCGGAGCTTCCTGTCTCTGTACAGCGTGGCCACGCCCCGACCTGGCCGACGCCTACCTGCAGCTGGACCTCACCTGCTGCTCGCCGGACCTCCGGCCCGAGGATCTCCGCGGACTCCGCCTCGGCGTGGAGCGTCTCGGGGCGCTGAGCTGTCCGCAGGTGAAGCGTCTGCGTGTGACGGCGCTGGTGCAGAGCGGCCAGTGTAAACGCAGGACGTCTGCGCAGGCGGTCGGAGCGCTGGCCGCGGAGCTGCTCACGGGGCTGTACGTCCACGAGAAGCACCTGGTGAACATCTCGCATGCAGGAACTCCCATTCGCTTCCTGCAGGTGGACAGCGTGAACTCGGGTTCTCATAAAGCGGGGCGCGTGACGTCTGAGACCCGTCTGGACGTGGTGTCGGTCCGGACGGTGGAAACACACCGGCGCTGGGCGCGTGAAGGTTCCGCCGTGCCTTTGGGAGGACTGGAGGAGGTCCGAGCCTCGCTGAGGGAGATGCTGACGCTCCCGCTGCGTTATCCGATCAGCACGCGGCGTGTGGGCGTGGCGGCGGGGCGTGGCGCGTTGCTGGTGGGACCTCCGGGCGTGGGGAAGACGCAGCTGGTGCGCGGCGTGGCGCGGGACGCGCGGGCGGCACTGGTGACGGTGAGCGGGCCGGTGGTGGTGGGGTCGCGACCCGGAGAGAGCGAGGAGAACCTGCGTGCTGCGTTTGCTCGAGCCTCGGACGCAGCACGAGAGGAACCGTGTGTGCTCTTCATCGACGAGATCGACGCGCTGTGTCCGAAACGGAGCTCCAGCACCGGAGCCCCGGAGAACCGACTCGTCGCTCAGCTCCTCACCCTCATGGATGGAATCGGCAGCGATGAAGAGTTCGTCATCATCGGAGCCACCAACCGGCCGGACGCCCTCGACCCGGCGCTCAGGAGACCCGGCCGCTTCGACAGAGAGatagtgGTAGGTGTTCCCACTCTGCAGCAGCGGTACCGggttctgcagtgtgtgtgtcagtgttccGCCTCCCAGCGAGGAGCAGACCTGCTGGCCGCTGAGATGACGAAGCCGGATACGGGGGCGGATCTGAGCGCGCTCAGTAGAGAGGCGGCACTGCAGGCCATACTGCACTctacacagGGCGGGGCTGGTGATTCTGGCCAATCAGGAGGCGAGGAGGGTAAAGTGTTAATGGAGCATTTTagtgtggaGTGGCCGATGAAGTACCCCGAGGCGTTTGTGCGTATGGGTGTGTGTCGTGCGCGGGGTGTGTTACTGTTCGGGCCGCCGGGCTGCGCTAAGACCACGCTGGTGAAAGCAGCGGCGTCTTCATCACACTGCAGCTTCCTCACGCTGAGCGGGGCGGAGCTTTACTCACCCTACGTAGGGGACTCGGAGAGGGCACTcgctcagCTGTTCCGGCAGGCGCGGGCGTGTTCTCCCTCCATCGTGTTTCTGGACGAGATTGACAGCTTGGTGGGTTGCCGTGACGATGGAGGCAGTTGCCGTGGCAGCAGTGTACAGGCTCAGGTGTTGTCTGTCCTGCTGAACGAGTTAGACGGCGTGGGCTTTAAGACCGCTGAGAGACGAGGGACaggacagagcgagagagagaacaagagaacaCGCAGAGACCAACGGatgcAGCTACAGGAAGTGTGTAATCAGGACGTGATGATTGTTGCAGCCACTAACAGGCCGGACATGCTGGACAGCGCTCTGCTCCGCCCGGGCCGATTCGACCACATCATATACGTCCCCCCACCTGACCTACAGgctCGTCTGGCCATCCTGCAGCTCCACACAGAGAAAATGCCGCTGAACTCGGATGTGTGTTTGGAGGATCTGGCAGCTCGGACAAACCTGTTCTCCGGAGCAGACCTGGAAAACCTCTGCAAGGAGgcggcTCTGTTAGCTCTTCATGAAGAAGGTATGAGTGTATCAATGGTGCAGCAGAAACACTTCCAGAAGGTTCTACAGAATTTTCAACCATCTATCAGCTCACAGCAGCTCCTGCAGTACCAGCAGCTCTTCAAACACAACTTCAGCTAGCATGCGACGGTTAGCATGCGACGGCTAGCATGCGACGGCTAGCACTCTGATGTTAGCATGCTGTGGTTAAACAGTTTGTTTATTGCTATGCTAATACTTggaatgttatttattgttgtgtgtgCGCTGTTCAAACTCCTGATTAAACACATTTCACtgaa

Function

symbol description
spata5l1 Predicted to enable ATP hydrolysis activity. Orthologous to human SPATA5L1 (spermatogenesis associated 5 like 1).

NR:

description
PREDICTED: spermatogenesis-associated protein 5-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305319.1 True 2547 mRNA 0.61 10 1227607 1234626

Neighbor

gene id symbol gene type direction distance location
bnc1 bnc1,LOC106591559 coding downstream 77810 1125631 ~ 1149797 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding downstream 111553 1103951 ~ 1116054 (-)
LOC113526880 NA coding downstream 142294 1082696 ~ 1085313 (-)
homer2 homer2,LOC108414443 coding downstream 152704 1056705 ~ 1074903 (-)
LOC117597537 fsd2 coding downstream 171340 1034949 ~ 1056267 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding upstream 59426 1294052 ~ 1314655 (-)
dut dut,LOC102779749 coding upstream 228117 1462743 ~ 1469671 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding upstream 244302 1478928 ~ 1492027 (-)
slc24a5 slc24a5,LOC108412301 coding upstream 331945 1566571 ~ 1586370 (-)
bcl2l10 NA coding upstream 629957 1864583 ~ 1876045 (-)
G92294 NA non-coding downstream 11170 1149539 ~ 1216437 (-)
G92359 NA non-coding downstream 211425 1014447 ~ 1016182 (-)
G92343 NA non-coding downstream 243086 982501 ~ 984521 (-)
G92282 LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478 non-coding downstream 251058 931958 ~ 976549 (-)
G92338 NA non-coding downstream 264397 962489 ~ 963210 (-)
G92412 NA non-coding upstream 54075 1288701 ~ 1295898 (-)
G92421 NA non-coding upstream 102265 1336891 ~ 1341381 (-)
G92415 NA non-coding upstream 109924 1344550 ~ 1344828 (-)
G92413 secisbp2l non-coding upstream 116580 1351206 ~ 1354977 (-)
G92459 NA non-coding upstream 177067 1411693 ~ 1413647 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other downstream 1256 1222721 ~ 1226351 (-)
G92340 NA other downstream 238551 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 380672 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 425395 782910 ~ 802212 (-)
G92240 NA other downstream 480077 706750 ~ 747530 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 281112 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 377185 1611811 ~ 1648286 (-)
G92531 NA other upstream 533779 1768405 ~ 1768795 (-)
LOC113534649 LOC108264477 other upstream 760405 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 801315 2035941 ~ 2130790 (-)

Expression


Co-expression Network