gnb5b (gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494)


Basic Information

Item Value
gene id gnb5b
gene name gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1881831 ~ 1904411 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305329.1
gTGTATCTGTCTCTCAGCGTCtctaacagctcacacacacacacacacacacacacacctagagaCAAAGCTCGCTTGTAAGGACCGTCCTCATTCCCCTCACCAAGATGTGTGACCAGACGTTTTTAGCGATCACGTTCGGCGCCTGCGACAACTGCAGCCAGAACAAACCTCTGATGAACGTCTACCTGCAGAACGAGCCGGTGAACTACTGCTCGCTGTGCGTGGAGAAGATGGCGTGTCAGGGTCTGGGGAAGGGGGAGAGCGTGGCCTCGCTGAAGGTCGAGGCGGAGAGTTTAAAGGTCAAACTGGAGCAGGAGCGAGCCAAACTGCACGATGCAGAGCTGAATCAGGTGGCGGAGAAGGTGGAAGCTCTGGGTGCGTTCACACTGAAGAGCCGCCGCACGCTGAAGGGTCACAGTAGTAAAGTGCTGTGTATGGACTGGTGCAGTGATAAGAGACGCATCGTCAGCTCCTCAcagGACGGGAAGGTCATCATCTGGGACGCCTTCACAACTAACAAGgagcaTGGCGTCACCATGCCGTGTACCTGGGTGTTAGCGTGTGCGTACGCTCCCTCCGGCTGTGTGATAGCGTGTGGtgggtTGGATAATAAATGCTCTGTCTATCCTCTGTCTCTGGATAAGAGTGAGAATTTGGCAGCGAAGAGGAAACCGGTGGCTGTTCACACCAACTATCTCTCATCCTGCAGCTTCACCAACTCTgacatgcagatccTGACCTCTAGTGGTGATGGTACGTGTGCATTATGGGATGTAGAGAGCGGGCAGCTGCTGCAGAGTTTCCACGGTCACTCGGCTGATGTGCTTTCACTGGACCTGGCTCCATCTGAGACAGGAAACACCTTCGTCTCTGGAggatGTGATAAGAAGGCTAATGTGTGGGACATGCGCTCCGGTCAGAACATCCAGTCCTTCGACACTCACGAGTCGGACATCAATGCTGTCAagtactACCCAAGTGGTGATGCTTTTGCCACTGCGTCTGACGATGCTACAGGCGTGACGTTACTGTAA

Function

symbol description
gnb5b Predicted to enable signaling receptor complex adaptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and dopamine receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in cardiovascular system; cranial ganglion; neurons; and visual system. Orthologous to human GNB5 (G protein subunit beta 5).
gnb5 Enables G-protein gamma-subunit binding activity and chaperone binding activity. Contributes to GTPase activator activity. Involved in dopamine receptor signaling pathway; negative regulation of voltage-gated calcium channel activity; and positive regulation of GTPase activity. Located in cytosol.

NR:

description
PREDICTED: guanine nucleotide-binding protein subunit beta-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305329.1 True 1037 mRNA 0.54 11 1881831 1904411

Neighbor

gene id symbol gene type direction distance location
bcl2l10 NA coding downstream 5786 1864583 ~ 1876045 (-)
slc24a5 slc24a5,LOC108412301 coding downstream 295461 1566571 ~ 1586370 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding downstream 389804 1478928 ~ 1492027 (-)
dut dut,LOC102779749 coding downstream 412160 1462743 ~ 1469671 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding downstream 567176 1294052 ~ 1314655 (-)
myo5aa myo5a,myo5aa coding upstream 2107 1906518 ~ 1984333 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding upstream 82962 1987373 ~ 1992487 (-)
LOC113534648 LOC108264479 coding upstream 115446 2019857 ~ 2033455 (-)
rab27a rab27a,LOC106562223,LOC106587426 coding upstream 695130 2599541 ~ 2623825 (-)
ccpg1 ccpg1 coding upstream 735453 2639864 ~ 2656507 (-)
LOC117597531 NA non-coding downstream 1258 1876965 ~ 1880573 (-)
G92592 NA non-coding downstream 19417 1861949 ~ 1862414 (-)
G92576 NA non-coding downstream 21960 1859594 ~ 1859871 (-)
G92560 NA non-coding downstream 40609 1840259 ~ 1841222 (-)
G92540 NA non-coding downstream 78028 1803578 ~ 1803803 (-)
LOC117597579 NA non-coding upstream 267463 2171874 ~ 2173454 (-)
G92763 NA non-coding upstream 319773 2224184 ~ 2224457 (-)
LOC117597578 NA non-coding upstream 336027 2240438 ~ 2260923 (-)
G92782 NA non-coding upstream 397695 2302106 ~ 2302430 (-)
G93023 NA non-coding upstream 683175 2587586 ~ 2606378 (-)
G92531 NA other downstream 113036 1768405 ~ 1768795 (-)
sema6dl sema6d other downstream 233545 1611811 ~ 1648286 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other downstream 350769 1515738 ~ 1531062 (-)
bloc1s6 bloc1s6 other downstream 589338 1197135 ~ 1292493 (-)
LOC113534649 LOC108264477 other upstream 90620 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 131530 2035941 ~ 2130790 (-)
onecut1 onecut1 other upstream 187323 2091734 ~ 2109935 (-)
G93046 NA other upstream 844977 2749388 ~ 2751169 (-)
G93047 NA other upstream 855201 2759612 ~ 2768298 (-)

Expression


Co-expression Network