LOC117597564 (si:ch73-125k17.2,LOC108264120,LOC108264121,LOC108264117,LOC108434033,LOC107564266,LOC107695204,LOC107742945)


Basic Information

Item Value
gene id LOC117597564
gene name si:ch73-125k17.2,LOC108264120,LOC108264121,LOC108264117,LOC108434033,LOC107564266,LOC107695204,LOC107742945
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4075256 ~ 4076641 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305337.1
aattccaTTACTCATCTAACATGTGCTCTACTGTCCCAGACTCCAAAAACTGTTTGCTCAGAAATCTGTCCACAAGGTACAAGGAAAGCACAAATTAAAGGTTTACCTCTGTGCTGCTTTGACTGTATCCCATGTGCTGATGGCTCTATATCAAACACAACAGGAGCAACAGATTGCATCAACTGTCCTGAAGAGTACTGGTctaatgaaagaaaagacagcTGCATCATGAAAATAATAGAGTTTCTTTCATATACTGAGACAATGGGGATTGTTCTTATGGTCCTGTCATTATTGGGTGCCTGtttaacattttctactatGGTGGTGTTCATACACTTTAGAGACACACCAATAGTTAAAGCAAATAATTCAGAGCTGAGCTTACTTTTACTTCTTTCCCTTATATTTTGCTTCCTCTGTCCTCTCACATTCATTGGTGAGCTAACAGTCTGGTCCTGCATGTTGCGTCACACAGCATTTGGTGTTGCCTTTGCCCTCTGCATTTCCTGTATGCTGGGGAAAACTATAGTTGTGGTAACTGCCTTCAGAGCAACACTACCTGGGAACAATGTGGCAGGAAAGTTTGGACCACCTCAACAAAGGGCCattgtgtgttcatgcactGCAGTTCAAATAGTTATTTGCATTCTTTGGCTAAATGTCGCACCACCATTCCCAGATAAAGTCTTTGAGCAACGcagtaaaaaaattattttggaaTGTAACACAGGCTCAGATGCTGCATTTTATGCTGTTCTAGGATACATTGGCCTTCTTGCCATAGTTTGCTTGGTCCTGGCCTTTTTAGCCAGAAAGCTACCTGATAATTTTAATGAAGCCAAATTCATCACATTTAGTATGCTTATATTCTGTGCGGTTTGGATCACCTTTATTCCAGCTTATGTCAGCTCTCCTGGAAAGTATACAGTAGCTGTAGAAATATTTGCAATTTTGTCTTCAGCTTTTGGACTACTGTTATGCATTTTTGTACCAAAATgttacatcattttaatcaaaccaGAGAGAAATACAAGAAAACATGTAATGGGAAAAAATTCAAAGGTTAATTAATTGTAAGTTTTACACAGTGCTgttctgaaatgtaaaaaatttatatttatgtgaaaATATGGTACACAGAACCATGGTAAATATACAGTGTTCCTACACAAACATATTATAAACACTAGAATTTATGGCAAACTACTTCTATGAAGCTCAGCTTTCTCTGATACtatatttgtaatgtaaatatagtgaaaGGTTCTACAAATGTAGAGGCTACAAATCCCAGTCAT

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305337.1 True 1301 mRNA 0.37 2 4075256 4076641

Neighbor

gene id symbol gene type direction distance location
LOC117597563 LOC108264122,LOC108263927,LOC108263928,LOC108437985,LOC108434028,LOC108434080,LOC108263926,LOC108434030 coding downstream 21562 4049740 ~ 4053694 (-)
LOC113534744 LOC108264122,LOC108263927,LOC108263928,LOC108263926,LOC108434028,LOC108437985,LOC108434080,LOC108434030 coding downstream 29786 4041522 ~ 4045470 (-)
LOC113534594 LOC108263928,LOC108264122,LOC108263926,LOC108263927,LOC108437985,LOC108434030,LOC108434028,LOC108434080,LOC108434082 coding downstream 39048 4031091 ~ 4036208 (-)
LOC113534603 LOC108263926,LOC108263927,LOC108264122,LOC108434080,LOC108437985,LOC108434028,LOC108263928,LOC108434077 coding downstream 46861 4025027 ~ 4028395 (-)
LOC113534321 LOC108263927,LOC108437985,LOC108434028,LOC108434080,LOC108434027,LOC108434077,LOC108434030,LOC108434025 coding downstream 65322 4005783 ~ 4009934 (-)
LOC117597565 NA coding upstream 17 4076658 ~ 4078462 (-)
LOC113534742 LOC108264121,LOC108264120,LOC108264117,LOC108434033 coding upstream 8481 4085122 ~ 4092659 (-)
LOC113534741 LOC108263925,LOC108434083,LOC107730035 coding upstream 16961 4093602 ~ 4100055 (-)
LOC113534597 LOC108263925,LOC108434083,LOC105904798 coding upstream 28586 4105227 ~ 4109059 (-)
LOC113534596 LOC108264119,LOC107707879,LOC107557164 coding upstream 33030 4109671 ~ 4112923 (-)
LOC113534402 NA non-coding downstream 128880 3944987 ~ 3946376 (-)
G93639 NA non-coding downstream 339864 3735097 ~ 3735392 (-)
G93557 NA non-coding downstream 494050 3579017 ~ 3581206 (-)
G93505 NA non-coding downstream 620885 3425023 ~ 3454371 (-)
LOC117597513 NA non-coding downstream 653098 3406145 ~ 3422158 (-)
G93707 NA non-coding upstream 78616 4155257 ~ 4155497 (-)
G93710 NA non-coding upstream 95432 4172073 ~ 4172312 (-)
G93716 NA non-coding upstream 107114 4183755 ~ 4183993 (-)
LOC117597614 NA non-coding upstream 154819 4231460 ~ 4231831 (-)
G93753 NA non-coding upstream 469798 4546439 ~ 4546705 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1723 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 526505 3425718 ~ 3548751 (-)
G93047 NA other downstream 1306958 2759612 ~ 2768298 (-)
G93046 NA other downstream 1324087 2749388 ~ 2751169 (-)
fam214a fam214a other downstream 1944466 2035941 ~ 2130790 (-)
G93711 LOC101487076 other upstream 96647 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 140377 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 1563055 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1637202 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 2120602 6197243 ~ 6281530 (-)

Expression


Co-expression Network