LOC113534742 (LOC108264121,LOC108264120,LOC108264117,LOC108434033)


Basic Information

Item Value
gene id LOC113534742
gene name LOC108264121,LOC108264120,LOC108264117,LOC108434033
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4085122 ~ 4092659 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305339.1
ATGGGGCGGCAAAACTACACACAGCTGGCTGCCAAAGATAGCCACGGCGGCTCCTCAACCTCCACAAGAAGACAGGGGAAGACCAGCGACAGTACCGAAGACCGTGCTCCGTACCAGCATCATGCCGAGAGTATGCACCCCGATGGCCGAAGAAATCCCCGGGGTCTTGCCTCAACGCTGCTCACCCCTGCTTACCATATCCCAAGCCAGGcctGCGGCAGCCTTGAGTTGCTTCAACTGGGTTCACTGTTTGTACAGATGAACACAATAAAACTCTCAATGTCTCAGCAGCATATTAAGGTCTGGAGCTTTGCATGTAAGCTGCTGGCTAAGTTTGAAGTGCAAAGCGTGTTGAAGGAAGGTGACATTATGATAGGTGGCATTTTCCCAGTTTATTCAAGACAAGAGAATATACTTTTTTCATTTGATAACAAACCACCAGTGCCAGAATGCAAAGGATTTGACTTACGAGCATTTCGCTGGACGAGGACCATGATGTTGGCAATAGATGAAATAAACCGAGATGATCATTTGCTTCCTAACATTTCTCTAGGATATATAATTGTGGACTCTTGTTCCTCTCCTACTAATGTTTTGAGAGCTGCCCTCACTTTGATGAGCACATCAGAGCAAAGGTTCTCTCAATGTCATCCACCTCCCATATTAGCTCTTATAGCTGAATCAGGATCTACCCAGTCTTTAGTTGTGGCTGGGGCTGTTGGACCATTCAAAATACCACTGGTGAGTTATTTTTCAACATGTGCATGTTTGAGTGATAAAACAAAATATCCTACATTTTTCCGAACAATACCAAGTGATTACTACCAAGCAAAGGCTTTGGCTTTCCTTGTCAGACAATATGGATGGACATGGATTGGAGTTATCCAGTCTGACAATGATTATGGACGAAATGGGATATCAGCATTCACAAAAGAAGTGGAGGCTCATGGGGTAAGTGAGCAGttgaaaaaagtacattttgtgGATGCATTTGGAGAGGCAGTGTTCTTTGACAAAAATGGAGACCCCCCTGCCTCATATGAAGTCATAAACTGGCAGATGAGGAAAGAGCAAGTGCAGCATATTGCAGTTGGCTATTTCAGTATCTCTGCAAGTGGAAAATATGTGCTTGTGATTAATGAAGACAAGATTATCTGGAGCACAGGAAATTTGACTCCAAAAGCTGTTTGCTCAGAAATCTGTCCACAAGGTACAAGGAAAGCACAAATTAAAGGTTTACCTCTGTGCTGCTTTGACTGTATCCCATGTGCTGATGGCTCTATATCAAACACAACAGGAGCAACAGATTGCATCAACTGTCCTGAAGAGTACTGGTctaatgaaagaaaagacagcTGCATCATGAAAATAATAGAGTTTCTTTCATATACTGAGACAATGGGGATTGTTCTTATGGTCCTGTCATTATTGGGTGCCTGtttaacattttctactatGGTGGTGTTCATACACTTTAGAGACACACCAATAGTTAAAGCAAATAATTCAGAGCTGAGCTTACTTTTACTTCTTTCCCTTATATTTTGCTTCCTCTGTCCTCTCACATTCATTGGTGAGCTAACAGTCTGGTCCTGCATGTTGCGTCACACAGCATTTGGTATTGCCTTTGCCCTCTGCATTTCCTGTATGCTGGGGAAAACTATAGTTGTGGTAACTGCCTTCAGAGCAACACTACCTGGGAACAATGTGGCAGGAAAGTTTGGACCACCTCAACAAAGGGCCattgtgtgttcatgcactGCAGTTCAAATAGTTATTTGCATTCTTTGGCTAAAAGTCGCACCACCATTCCCAGATAAAGTCTTTGAGCAACGcagtaaaaaaattattttggaaTGTAACACAGGCTCAGATGCTGCATTTTATGCTGTTCTAGGATACATTGGCCTTCTTGCCATAGTTTGCTTGGTCCTGGCCTTTTTAGCCAGAAAGCTACCTGATAATTTTAATGAAGCCAAATTCATCACATTTAGTATGCTTATATTCTGTGCGGTTTGGATCACCTTTATTCCAGCTTATGTCAGCTCTCCTGGAAAGTATACAGTAGCTGTAGAAATATTTGCAATTTTGTCTTCAGCTTTTGGACTACTGTTATGCATTTTTGTACCAAAATgttacatcattttaatcaaaccaGAGAGAAATACAAGAAAACATGTAATGGGAAAAAATTCAAAGGTTAATTAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305339.1 True 2208 mRNA 0.42 9 4085122 4092659

Neighbor

gene id symbol gene type direction distance location
LOC117597565 NA coding downstream 6660 4076658 ~ 4078462 (-)
LOC117597564 si:ch73-125k17.2,LOC108264120,LOC108264121,LOC108264117,LOC108434033,LOC107564266,LOC107695204,LOC107742945 coding downstream 8481 4075256 ~ 4076641 (-)
LOC117597563 LOC108264122,LOC108263927,LOC108263928,LOC108437985,LOC108434028,LOC108434080,LOC108263926,LOC108434030 coding downstream 31428 4049740 ~ 4053694 (-)
LOC113534744 LOC108264122,LOC108263927,LOC108263928,LOC108263926,LOC108434028,LOC108437985,LOC108434080,LOC108434030 coding downstream 39652 4041522 ~ 4045470 (-)
LOC113534594 LOC108263928,LOC108264122,LOC108263926,LOC108263927,LOC108437985,LOC108434030,LOC108434028,LOC108434080,LOC108434082 coding downstream 48914 4031091 ~ 4036208 (-)
LOC113534741 LOC108263925,LOC108434083,LOC107730035 coding upstream 943 4093602 ~ 4100055 (-)
LOC113534597 LOC108263925,LOC108434083,LOC105904798 coding upstream 12568 4105227 ~ 4109059 (-)
LOC113534596 LOC108264119,LOC107707879,LOC107557164 coding upstream 17012 4109671 ~ 4112923 (-)
LOC113534739 LOC108264121,LOC108264117 coding upstream 31163 4123822 ~ 4126781 (-)
LOC117597529 NA coding upstream 38606 4131265 ~ 4134060 (-)
LOC113534402 NA non-coding downstream 138746 3944987 ~ 3946376 (-)
G93639 NA non-coding downstream 349730 3735097 ~ 3735392 (-)
G93557 NA non-coding downstream 503916 3579017 ~ 3581206 (-)
G93505 NA non-coding downstream 630751 3425023 ~ 3454371 (-)
LOC117597513 NA non-coding downstream 662964 3406145 ~ 3422158 (-)
G93707 NA non-coding upstream 62598 4155257 ~ 4155497 (-)
G93710 NA non-coding upstream 79414 4172073 ~ 4172312 (-)
G93716 NA non-coding upstream 91096 4183755 ~ 4183993 (-)
LOC117597614 NA non-coding upstream 138801 4231460 ~ 4231831 (-)
G93753 NA non-coding upstream 453780 4546439 ~ 4546705 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 11589 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 536371 3425718 ~ 3548751 (-)
G93047 NA other downstream 1316824 2759612 ~ 2768298 (-)
G93046 NA other downstream 1333953 2749388 ~ 2751169 (-)
onecut1 onecut1 other downstream 1975187 2091734 ~ 2109935 (-)
G93711 LOC101487076 other upstream 80629 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 124359 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 1547037 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1621184 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 2104584 6197243 ~ 6281530 (-)

Expression


Co-expression Network