LOC113534741 (LOC108263925,LOC108434083,LOC107730035)


Basic Information

Item Value
gene id LOC113534741
gene name LOC108263925,LOC108434083,LOC107730035
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4093602 ~ 4100055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305340.1
ATGTCCACTAAGATTACGATTGTGGATCCTAATTGCACTCTGCAGAATGATTTGAGGCCAGGCTTCATTGCTGATGGAGACTTTGTCATTGGGGGCATTTTCCCTTTTCACTACAATCAGGAAATGCCAGATTTGAATTGCACGTACAAGCCCAGACCAGTAAAGTGTAACGGGTTTGATCCCAGAGCTTTCCGCTGGGCTCTGACCTTGAAGCTTGCTGTGGAGGAAATTAACAACAGTACTGAACTGCTACCTAACCACACTCTGGGCTATAAAATGTTTGATTCCTGTGCATACCCATTAACAGCTCAGAGAGCAGCTCTGGCTGTTATGAATGGaccaaatgaagcagataaacaTATGTGTTCAAGTGCTAGCCCGATGTTGGCTGTTATTGCTGAATCTGGGTCAGCTGAGTCTATTGTGGTTTCTAGAATTTTACAACATTTCAGAATTCCAATGATCAGCTACTTCTCTTCCTGTGCCTGCCTCAGTGACAGACGAGAATTCCCCACCTTCTTTAGGGTCATCCCCAGTGATGCCTACCAGGTGAAAGCCATTGCCAAGCTGCTGATACATTTCAACTGGACATGGGTAGGTGTAGTGCGGGGAGATCATGTGTATGGCCACTTCGCCCTGCAGGGACTGCTTAAGGAGCTGGAGggtacaaatgtgtgtgtgtcctatcAAGAGATGATTCCTCTGTTATACAACAGCCAGAGAGCAATAGAGATCATCCATGTAATGAACAGCTCCAGTGCACGAGTAGTGGTGGTGTTTTCAGCTGAGGGAGAACTCACACCATTTATGAAGGACTATATGAAACTGAATGTTACTGGAATTCAGTGGATTGCCAGTGAAGCCTTGGCAACAGCTTCAGTGTTCACAGGAAGTGAGTATTACCCCTTCTTGGGAGGCATGATTGGGTTTGGGATACGGCAGGGCTATATTCCAAAGCTGAAAGATTATCTAACAACAGTGAACCCACAGACATACTCCTCCAATACTCTGGTGCAGGAACTATGGGGTGTCCTGTATGGGTGCTCTCCCTTTTCCTCCTTTACCCACAGTACTCAGCTGCCCCTATGCACAGGGGAAGAGACACTCAACAAGCAACACTCTGCCTACATGAACACATCCAGTCCTCGCATtgcttataatatatataaaagtgtgtatGCTATTGCTCATTCCCTCCACAATCTTACTTCCTGCAAACCTGGAAATGGGCCATTCATTAACTCCACATGTGCTGACAATAGCAATGTCTACCCTTGGCAGCTCCAGTATTACCTGCAAGAGGTCTCATTCACTATTTCAGGAGAGTTGGTGAATTTTGATATGAATGGTGACTCAATCCCATCCTACGACCTGATCAACTGGCAGAAGGGTACAGCTGGCAATATTGAGCTGGTTAAAGTGGGCATGTATGATGGGGCTCGTGAGGCTGGGAATGAGCTGGTCATTTACGACATGGCTATCACGTGGGCCGGAGACAAAAGTGAGCAGGTGCCAGTCTCTGTTTGCAGTGACAGCTGCCCTCCAGGATTTAGGAAGGCTGTCCGTCAAGGGGAGCCTCTGTGCTGCTTTGACTGTGTACCATGTGACAGTGGCAAGATTAGTAATCAGACAGatttaatagACTGTATGGCCTGTCCTGAAGATTATTGGTCCAATGTAGATGGAACAGAATGTATTCCCAAGGTGATTGAGTTCCTTTCCCACGATGCAATGGGGTTAACACTGACAATTATTGCTGTTATTGGGGCTTGTGTCACCTTAGCTGTATTTGGAGTCTTTCTCTACCACAGAAACACTCCCATTGTGCGTATGAATAACTCAGAGCTGAGTTTCTTCATCCTGTTCTCCTTGACCCTGTGTTTCCTGTGTGCACTGATCTTTATTGGGGAGCCCACATCCTGGTCATGCATGCTGCGACACACTGCTTTCAGCATCACCTTCTCGCTCTGCATCTCCTGCATCCTAGGTAAAACTTTAGTGGTTCTTGCTGCTTTCACAGCCACCCAGCCTGGAAATAATGTGATGAAATGGCTTGGGCCTACACAGCAGAGGATCATCATTTTTAGCTGCACCCTGGTCCAGATGGTCATCTGTGCTGCATGGCTCATATCTTCTCCTCCATTCccctataaaaacacacagtatcaGCGCTCTAAGGTAATTCTAGACTGCAAGGTGGGATCTGAGTTAGCCTTCTGGTGTGTGCTTGGCTACATTGGCTTCCTggcttgtttgtgtttcattttggcCTTTCTAGCTCGAAAATTGCCTGGAAATTTTAATGAAGCTAAATATATCACTTTTAGCATGTTAATATTTTGTGCAGTGTGGCTGACATTTATACCTGCCTATGTAAGTTCACCTGGTAAATTCACTACTGCTGTTGAAATATTTGCTATTTTAGCTTCTAGCTTTGGCCtccttttgtgtttatttgctcCAAAGTGTTACATTATTCTACTTAAAGCTGAACAGAATACCAAACAGCATCTAATGGGGAAATAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305340.1 True 2526 mRNA 0.45 8 4093602 4100055

Neighbor

gene id symbol gene type direction distance location
LOC113534742 LOC108264121,LOC108264120,LOC108264117,LOC108434033 coding downstream 943 4085122 ~ 4092659 (-)
LOC117597565 NA coding downstream 15140 4076658 ~ 4078462 (-)
LOC117597564 si:ch73-125k17.2,LOC108264120,LOC108264121,LOC108264117,LOC108434033,LOC107564266,LOC107695204,LOC107742945 coding downstream 16961 4075256 ~ 4076641 (-)
LOC117597563 LOC108264122,LOC108263927,LOC108263928,LOC108437985,LOC108434028,LOC108434080,LOC108263926,LOC108434030 coding downstream 39908 4049740 ~ 4053694 (-)
LOC113534744 LOC108264122,LOC108263927,LOC108263928,LOC108263926,LOC108434028,LOC108437985,LOC108434080,LOC108434030 coding downstream 48132 4041522 ~ 4045470 (-)
LOC113534597 LOC108263925,LOC108434083,LOC105904798 coding upstream 5172 4105227 ~ 4109059 (-)
LOC113534596 LOC108264119,LOC107707879,LOC107557164 coding upstream 9616 4109671 ~ 4112923 (-)
LOC113534739 LOC108264121,LOC108264117 coding upstream 23767 4123822 ~ 4126781 (-)
LOC117597529 NA coding upstream 31210 4131265 ~ 4134060 (-)
LOC113534615 LOC108264116,LOC108434034,LOC108264184,LOC108264127,LOC108264128,LOC108264136,LOC108264183 coding upstream 37105 4137160 ~ 4140602 (-)
LOC113534402 NA non-coding downstream 147226 3944987 ~ 3946376 (-)
G93639 NA non-coding downstream 358210 3735097 ~ 3735392 (-)
G93557 NA non-coding downstream 512396 3579017 ~ 3581206 (-)
G93505 NA non-coding downstream 639231 3425023 ~ 3454371 (-)
LOC117597513 NA non-coding downstream 671444 3406145 ~ 3422158 (-)
G93707 NA non-coding upstream 55202 4155257 ~ 4155497 (-)
G93710 NA non-coding upstream 72018 4172073 ~ 4172312 (-)
G93716 NA non-coding upstream 83700 4183755 ~ 4183993 (-)
LOC117597614 NA non-coding upstream 131405 4231460 ~ 4231831 (-)
G93753 NA non-coding upstream 446384 4546439 ~ 4546705 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 20069 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 544851 3425718 ~ 3548751 (-)
G93047 NA other downstream 1325304 2759612 ~ 2768298 (-)
G93046 NA other downstream 1342433 2749388 ~ 2751169 (-)
onecut1 onecut1 other downstream 1983667 2091734 ~ 2109935 (-)
G93711 LOC101487076 other upstream 73233 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 116963 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 1539641 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1613788 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 2097188 6197243 ~ 6281530 (-)

Expression


Co-expression Network