LOC113534724 (LOC108264203,LOC108264204,LOC108264095,LOC108264099,LOC108264208,LOC108264205,LOC108264096,LOC108264097,LOC108264207,LOC108264212)


Basic Information

Item Value
gene id LOC113534724
gene name LOC108264203,LOC108264204,LOC108264095,LOC108264099,LOC108264208,LOC108264205,LOC108264096,LOC108264097,LOC108264207,LOC108264212
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4552139 ~ 4557113 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305349.1
ATGGATGGAGTGGGAATTGACCTCAGTGAATTCCGACTTGCTCAGACTATGACTTTTGCAATTGATGAAATCAACAGAAGCAACAACTTGCTACCAAATATCTCACTTGGTTACAAGATTTATGATAATTGTCTCTCAGGCTTGTTATCTATGAAGGCAGCCATGTCTTTAATGAATGGTCAGGACATAACAGCAGATGCCTGCTCTGGACAAGCAGTAGTACAAGCCATCATAGGGGAGTCAGAGTCTACTCCTACTATAGCACTCACAAAAACTACAGGACCTTTTAACATCCCAGTGATAAGTCATGCTGCCACATGTGAATGTTTGAGCAACAGAAAAGATTACCCCTCTTTCTTCAGGACCATACCGAGTGACTACTACCAGGGTAGAGCACTGGCATATTTGGTCAAGCACTTTGGCTGGTCTTGGGTGGGAGCTGTGTACAGTGATAATGACTATGGCAACAATGGAATGGCCATTTTTCTGAATGCAGCCAAAGAGGAGGGAATATGTGTTGAGTACTCAGAGAAGTTTGACCGGTCAGATCCTGCCAAAATGGTTAAAGTGGCTGATATTATTAAGAAAGGCACAGCCAAAGTAATTATTGTATTTCTCGCCTActttgatatgaacatttttatagAACAGCTTATATTAAATAATCTAACTGGCTACCAGATGATTGGTGTTGCATGGATTTCTGCTGGTGATCTAGCAACACCAGCAAGTTACAATGTATTGGCTGGAGCCATTGGTTTTGATGTGGGAAAATTGAAGATTGGTAATTTTGCTCACTATGCTGTCAATGAATTTTGGCAAACAGCACTCCCTTGCTTGCATACAGAGGGAAATATATCTCAAACTGAAAACAACTGCAAGAAATATGAAGATATGATTCAATTTAAAAACTACAGTAAGGATATATCAGAATTGAGATATGCAAATAATGTCTACAATGCAGTCTATACTGTGGCACATTCTCTACACACGCTGTTGAGATGTACAGAAAACCAGAgttgtgagaaaaacaaaacaattcaaCCATGGCAGGTTGTTATGTCGCTAAAAAGGGTAAATTTTACCACCAAAGTAGGAGAACAGGTTTGGTTTGACAGCACTGGGGCAACGGCTGCAAAGTATGATGTGGTTAACTGGCAACGAGGGTTCAATGGAGAAGTGCAGTTTAAGGTTGTGGGCTATTATGACGCCTCTCTGCCAACTGGACAACAATTTGTCCTAAATGCTGAAGATATAGTCTGGGCTGGAGAGAATAGAGAGAAGCCAAGgtctgtgtgcagtgagagcTGTCCTCCAGGAACCAGGAAAGCTGCACAGAAAGGAAGGCCTGTCTGCTGCTACGACTGTATACCATGTGCAGAGGGAGAGATCAGTAACCAGACAGATTCAAATAACTGCGAGCAGTGTCCAGGAGAATATTGGTCTAATGCTGATAgagataaatgtgtgttaaagGTCATAGAGTTTCTTTCATTTACAGAGGTTATGGGGATAGTACTGGTACTTTTTTCCTTGTTTGGAGCTACATTAACTGTGTTAgtagctattttatttttaatagaaaaggACACTCCTATTGTTAAGGCCAACAACTCTGAGCTGAGCTTCCTGCTGCTGTTCTCCCTGactctgtgtttcctctgttcaCTTACTTTCATTGGACGGCCCTCTCAGTGGTCCTGTATGCTGCGACACACAGCGTTTGGGATCACCTTTGTCCTCTGTATCTCCTGTGTTCTGGGAAAAACAATAGTGGTGTTAGTGGCCTTCAGGGCTACACTTCCAGGcagtaatgtaatgaaatggtttgggcctctacagcagagactcagtgTACTTGCATTCACTCTCATACAGGTTCTTATTTGTGTGCTGTGGTTAACACTTTCCCCTCCTTTCCCCTATAAGAACATGAACTACTACAAGGAAAGGATCATATTAGAATGTAACTTGGGCTCAGCTATAGGTTTCTGGGCAGTGTTGGGTTATATTGGAGTACTTGCTTTCTTGTGCTTTGTTTTGGCTTTCTTAGCTAGAAAGCTGCCAGATAATTTTAATGAAGCTAAATTCATCACATTCAGCATACTCATATTCTGTGCTGTGTGGATAACCTTTATTCCAGCTTATGTCAGCTCTCCTGGAAAATTTACTGTAGCTGTGGAGATATTTGCTATTTTGGCCTCTAGTTTTGCTCTactgttctgtatatttacacctaaatgttatattattctgtttaaacctgaactaaacacaaagaaaaatatgatgGGTAAAATGGCATCTAAATCACTTTAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305349.1 True 2319 mRNA 0.41 6 4552139 4557113

Neighbor

gene id symbol gene type direction distance location
LOC113534725 LOC108264094,LOC108264095,LOC108264099,LOC108264208,LOC108264205,LOC108264093,LOC108264096,LOC108264097,LOC108264212,LOC108264207 coding downstream 10371 4537081 ~ 4541768 (-)
LOC113534726 LOC108264095,LOC108264205,LOC108264099,LOC108264093,LOC108264096,LOC108264207,LOC108264212,LOC108264097,LOC108264094,LOC108264203 coding downstream 18268 4527208 ~ 4533871 (-)
LOC113534611 LOC108264208,LOC108264094,LOC108264203,LOC108264204,LOC108264095,LOC108264099,LOC108264205,LOC108264093,LOC108264096,LOC108264212 coding downstream 33205 4515183 ~ 4518934 (-)
LOC113534728 LOC108264097,LOC108264095,LOC108264099,LOC108264098,LOC108264205,LOC108264096,LOC108264093,LOC108264212,LOC108264094,LOC108264207 coding downstream 45140 4499062 ~ 4506999 (-)
LOC117597618 NA coding downstream 59400 4492546 ~ 4492739 (-)
LOC113534723 LOC108264099,LOC108264095,LOC108264205,LOC108264096,LOC108264212,LOC108264097,LOC108264093,LOC108264094,LOC108264203,LOC108264204 coding upstream 984 4558097 ~ 4562322 (-)
LOC117597542 LOC108264205,LOC108264203,LOC108264208,LOC108264204,LOC108264207,LOC108264095,LOC108264093,LOC108264094,LOC108264097,LOC108264096 coding upstream 12190 4569303 ~ 4577572 (-)
LOC113534722 LOC108264093,LOC108264207,LOC108264095,LOC108264205,LOC108264099,LOC108264096,LOC108264094,LOC108264212,LOC108264097,LOC108434099 coding upstream 32073 4589186 ~ 4594035 (-)
LOC113534721 LOC108264207,LOC108264093,LOC108264205,LOC108264095,LOC108264099,LOC108264096,LOC108264094,LOC108264212,LOC108264097,LOC108264203 coding upstream 40461 4597574 ~ 4602961 (-)
LOC113534774 LOC108263974,LOC108263992,LOC108434102,LOC108437989 coding upstream 73739 4630852 ~ 4634757 (-)
G93753 NA non-coding downstream 5434 4546439 ~ 4546705 (-)
LOC117597614 NA non-coding downstream 320308 4231460 ~ 4231831 (-)
G93716 NA non-coding downstream 368146 4183755 ~ 4183993 (-)
G93710 NA non-coding downstream 379827 4172073 ~ 4172312 (-)
G93707 NA non-coding downstream 396642 4155257 ~ 4155497 (-)
G93896 NA non-coding upstream 226812 4783925 ~ 4785131 (-)
G93926 NA non-coding upstream 336473 4893586 ~ 4894074 (-)
LOC117597587 NA non-coding upstream 409521 4966634 ~ 4971603 (-)
G93988 NA non-coding upstream 450312 5007425 ~ 5011433 (-)
G94010 NA non-coding upstream 519027 5076140 ~ 5179801 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 331532 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 378545 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 478606 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 1003388 3425718 ~ 3548751 (-)
G93047 NA other downstream 1783841 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 1082583 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1156730 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1640130 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2589387 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2880978 7438091 ~ 7694427 (-)

Expression


Co-expression Network