LOC113534712


Basic Information

Item Value
gene id LOC113534712
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5805677 ~ 5807182 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305354.1
TTACAATTTATCTACCCTGttccccctcctccctcctccttaGCTGATACTCAGATGCAGGTTATCAGGAACGGTCTGGACTCCTTCTCCACAGTCTCCTGCATTCACTTCATACCACGCACCAATGAAAACGCCTATATTAACATTACATCTCGCGATGGATGTTGGTCCTATGTTGGAAGCACTGGCAATATGCAGACGGTGTCTCTGGCCCAAAATGGTTGTGTCTATCACCAGATCGTCCAACATGAGCTTCTTCATGCTCTGGGCTTTAATCATGAACAATGCCGCAGTGACCGAGACAACCACATCCAAGTTGTCTGGGATAACGTTTCAGACGATCATAAACACAACTTCAACGTAAAGCAAACTCTGAATCAGGGAACTCCCTACGATTACAACTCCGTCATGCAGTACTCCAAAACTGTTTTCTCTAAGAATGGCCAGGCCACCATGATCCCCATCCCTGACCCCAATGTGGTCTTTGGCAAAGCCACTCAGATGAGCCAAAACGACATCGACAGACTCAAATTACTCTACCAGTGCTAAACTGCTGTGTGCTGCAGATGACCAGTCGTCCTGATGTCCTCTGTTGGTTGTAATGGcagttttaatctgtttaattgtttttggagacaataaacatgaataacTTCATTTCTTAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305354.1 True 666 mRNA 0.45 5 5805677 5807182

Neighbor

gene id symbol gene type direction distance location
LOC113534713 NA coding downstream 9621 5792221 ~ 5796056 (-)
lsm14ab lsm14a coding downstream 147572 5644816 ~ 5658105 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 222262 5570395 ~ 5583415 (-)
larp6a larp6,LOC107665376 coding downstream 390754 5409567 ~ 5414923 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding downstream 433550 5354621 ~ 5372127 (-)
LOC117597570 NA coding upstream 240 5807422 ~ 5809517 (-)
chst8 LOC108264863,LOC108264314 coding upstream 117349 5924531 ~ 5928298 (-)
LOC113534754 LOC108264847 coding upstream 224234 6031416 ~ 6042803 (-)
gramd1bb gramd1b,gramd1bb,LOC108264679,LOC107717608,LOC107670606,LOC107733299 coding upstream 241294 6048476 ~ 6171119 (-)
trnam-cau_19 NA coding upstream 386893 6194075 ~ 6194147 (-)
G94441 NA non-coding downstream 101886 5703581 ~ 5703791 (-)
G94325 NA non-coding downstream 243271 5560555 ~ 5562406 (-)
G94284 NA non-coding downstream 413829 5388102 ~ 5391848 (-)
G94058 NA non-coding downstream 469268 5332074 ~ 5336409 (-)
G94045 LOC108264453 non-coding downstream 679350 5120028 ~ 5126327 (-)
LOC117597596 NA non-coding upstream 104586 5911768 ~ 5913593 (-)
G94607 NA non-coding upstream 218178 6025360 ~ 6029235 (-)
G94608 NA non-coding upstream 222127 6029309 ~ 6030675 (-)
G94728 NA non-coding upstream 423674 6230856 ~ 6231165 (-)
G94730 NA non-coding upstream 425823 6233005 ~ 6233239 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 19246 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 162728 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 1585070 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 1632083 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1732144 4070800 ~ 4073533 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 390061 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 1339318 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 1630909 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 2588630 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 3367473 9174655 ~ 9215815 (-)

Expression


Co-expression Network