LOC117597570


Basic Information

Item Value
gene id LOC117597570
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5807422 ~ 5809517 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305355.1
GTACACAGAGAAGGGTATAAAACCCAGCCGTCCCTCTGCCACTGTACCATCTCATTTCTTCTTGGAGTTCTGAGGAcatttgctgtcatgtttgtgTATAAGGTGACTGTGGGTCTGTTGGCCCTGCTGCTGGTCTGTTCTGCAGAGGAGgactctctttctcttctgccTGTGGGAGAATTGATCGAGAGAGCAAACAGTAAAATCAATCGTGCCATTGGTGACACTGTGCTGATTGAAGGAGACATTGCTGTTCCTACTGGCAATGAGAAAAACGCTGACCCCTGCACCGCCAAGAACTGCAAGTGGCCAAAGTCGGCTGACGGAAAGGTCTACGTCCCCTACGTGATCTCCCACATACATATAGTACGCCAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305355.1 True 378 mRNA 0.50 4 5807422 5809517

Neighbor

gene id symbol gene type direction distance location
LOC113534712 NA coding downstream 240 5805677 ~ 5807182 (-)
LOC113534713 NA coding downstream 11366 5792221 ~ 5796056 (-)
lsm14ab lsm14a coding downstream 149317 5644816 ~ 5658105 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 224007 5570395 ~ 5583415 (-)
larp6a larp6,LOC107665376 coding downstream 392499 5409567 ~ 5414923 (-)
chst8 LOC108264863,LOC108264314 coding upstream 115014 5924531 ~ 5928298 (-)
LOC113534754 LOC108264847 coding upstream 221899 6031416 ~ 6042803 (-)
gramd1bb gramd1b,gramd1bb,LOC108264679,LOC107717608,LOC107670606,LOC107733299 coding upstream 238959 6048476 ~ 6171119 (-)
trnam-cau_19 NA coding upstream 384558 6194075 ~ 6194147 (-)
kirrel3b LOC108264823,LOC108434141,LOC103024239 coding upstream 667435 6476952 ~ 6680208 (-)
G94441 NA non-coding downstream 103631 5703581 ~ 5703791 (-)
G94325 NA non-coding downstream 245016 5560555 ~ 5562406 (-)
G94284 NA non-coding downstream 415574 5388102 ~ 5391848 (-)
G94058 NA non-coding downstream 471013 5332074 ~ 5336409 (-)
G94045 LOC108264453 non-coding downstream 681095 5120028 ~ 5126327 (-)
LOC117597596 NA non-coding upstream 102251 5911768 ~ 5913593 (-)
G94607 NA non-coding upstream 215843 6025360 ~ 6029235 (-)
G94608 NA non-coding upstream 219792 6029309 ~ 6030675 (-)
G94728 NA non-coding upstream 421339 6230856 ~ 6231165 (-)
G94730 NA non-coding upstream 423488 6233005 ~ 6233239 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 20991 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 164473 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 1586815 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 1633828 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1733889 4070800 ~ 4073533 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 387726 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 1336983 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 1628574 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 2586295 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 3365138 9174655 ~ 9215815 (-)

Expression


Co-expression Network