LOC113525461 (slc12a1,LOC108412716,LOC107739981)


Basic Information

Item Value
gene id LOC113525461
gene name slc12a1,LOC108412716,LOC107739981
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1478928 ~ 1492027 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305386.1
TCCCGAGGCTAATGTGGTTGACCTTCCTCATCGCCGTGGCCTTCATCCTCATTGctgagTTGAACGTCATCGCTCCCATCATCTCTAACTTCTTCCTGGCCTCCTACGCCCTCATTAACTTCTCCTGCTTCCACGCCTCCTACGCTAAATCCCCAGGCTGGAGGCCGGGGTATAAGTACTACAACATGTGGCTGTCTCTGTTCGGGGCCGTGCTGTGCTGCGCTGTGATGTTCGTCATTAACTGGTGGGCTGCGCTTCTCACCTACGCCATAGAGATCTTCCTCTACATCTACGTCACGGTCAAAAAGCCAGATGTGAACTGGGGCTCCTCCACGCAGGCCGTGACCTTCGTGAACGCCGTGAACAACGCGCTGACTTTATCAGGAGTGAATGAACACGTTAAGAACTTCAGGCCTCAGTGCATCGTGTTGACCGGACCTCCTAAAACCCGCCCGGCTCTGCTGGACCTCGCTCACTCCTTCACTAAAAACTTTGGTCTCTGCATCACCTGCGAAGTGTTTGTGGGTTCTCgggtgcagcagcagcaggagctcaGTGACTGTATGGAAAAGAATCAGCTGTGGCTCAATCAGCAGAAGAGGAAAGCGTTTTACGCCGCCGTAACAACCGACAACTTTCGCGACGGAGCAGAGAGTCTGTTACAGGCGTCAGGATTAGGAAGGCTTAGACcaaacacactgatgttggggtTTAAGAGAGACTGGAAGACAGCAAAAACAGAAGATGTACAGGGATATGTCGGAGTTCTGCAtGATGCGTTTGATTTCGAATACGGAACGGTGATTCTGAGGGTCAATCAGGGACTGGACATCTCACACATCCTCGCAGCTGAagaggagatggagaggatgCTCCTGGAGCAGCAGGCGTTGGAGATGGAGGAGAACGGCTTCCAGGAAGGAGgaaaaggattttttaaaagatacagAAAGTCAAAGAAAGAGCTGACTCCTAAAGtgGAGGTTCCGCAGTCATCTGATGTGTTGAAGATAAACCAGCGTTTGGTGGAGGCCAGCTCTCAGTTTAAGAGGAAGCAGGGGAAAGGAACCATCGACGTGTGGTGGTTATTTGATGATGGAGGTCTGACGCTGTTACTGCCCTACATACTGACCACGAGGAAGAAGTGGAGAGACTGTAAACTGCGTATCTTCATCGCAGGACAACCGGAACGCGTACAACAGGACAAAGAAGAaatcCAGTCACTGCTGAAAAAATTCAGGATCAGATGCATTGACATCACCGTCATCACAGACCTCCACATCAGGCCCACTTCCGAAAActggaaGCTGTATGAGGACATGATCGCACCGTTCCGGCTGTATGAAGGTTCTAAGGACACGGCTCAGGCTGAAGCTCTGAGGAAGGAGAACCCCTGGAAGATCACTGATGCTGAGCTCGACCGCTTCGAGGAGAagACGAGTCTTCAGGTGCGTCTGAATGAGTTGCTGCAGGAGAGCTCCAGAGCAGCTAAACTCATCATAGTgagctTGCCCATTGCACGTAAAGGCTCTGTATCTGATCACCTGTACATGTCGTGGTTGGAGGTTCTGACTAAAAACCTGCCTCCCACTCTGCTGGTGCGCGGAAACCACAAGAGCGTCCTCACCTTCTACTCATAAAGCCGTGTTTCAGTCCTGCGCTCACTGCGTCCTCTCACACCGCTGTCTTTACAGCGCATCTAACCTGTAGTGTCCATACCTGTAGTGTCTACACCTGTAGTGTCCATACCTGTAGTGTCTACACCTGTAGTGTCTACACCTGTAGTGTCTATACCTGTAGTGTCCATACCTGTAGTGTCTACACCTGTAGTGTCCATACCTGTAGTGTCTACACCTGTAGTGTCTACACCTGTAGTGTCCATACCTGTAGTGTCTACACCTGTAGTGTCCATACCTGTAGCGTCTACACCTGTAGTGTCTACACCTGTAGTGTCCATACCTGTAGTGTCTACACCTGTAGTGTCTACACCTGTAGTGTCCATACCTGTAGCGTCTACACCTGTAGTGTCTACACCTGTAGTGTCCATACCTGTAGTGTCTACACCTGTAGTGTCTACACCTGTAGTGTCCATACCTGTAGTGTCTACACCTGTAGTGTCTACACCTGTAGTGTCCATACCTGTAGCGTCTACACCTGTAGTGTCTACACCTGTAGTGTCCATACCTGTAGTGTCCATACCTGTAGTGTCTACACCTGTAGTGTCTATAGCCTCGTGATCACTTTCTCTCATGACACTAAATGTAAATTAGTAGCTCATTACGTCTTTCCTTCCACCTGAGAGCCAGGAATGAGACACAGCCCATGAACAGCACActactgccctctag

Function

symbol description
slc12a1 Predicted to enable sodium:potassium:chloride symporter activity. Predicted to be involved in cell volume homeostasis; inorganic ion homeostasis; and inorganic ion transmembrane transport. Predicted to act upstream of or within ion transport and transmembrane transport. Located in apical plasma membrane. Is expressed in eye and renal system. Human ortholog(s) of this gene implicated in Bartter disease and Bartter disease type 1. Orthologous to human SLC12A1 (solute carrier family 12 member 1).

NR:

description
PREDICTED: solute carrier family 12 member 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305386.1 True 2348 mRNA 0.50 15 1478928 1492027

Neighbor

gene id symbol gene type direction distance location
dut dut,LOC102779749 coding downstream 9257 1462743 ~ 1469671 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding downstream 164273 1294052 ~ 1314655 (-)
spata5l1 spata5l1 coding downstream 244302 1227607 ~ 1234626 (-)
bnc1 bnc1,LOC106591559 coding downstream 329131 1125631 ~ 1149797 (-)
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding downstream 362874 1103951 ~ 1116054 (-)
slc24a5 slc24a5,LOC108412301 coding upstream 74544 1566571 ~ 1586370 (-)
bcl2l10 NA coding upstream 372556 1864583 ~ 1876045 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding upstream 389804 1881831 ~ 1904411 (-)
myo5aa myo5a,myo5aa coding upstream 414491 1906518 ~ 1984333 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding upstream 495346 1987373 ~ 1992487 (-)
G92463 NA non-coding downstream 62424 1416082 ~ 1416504 (-)
G92459 NA non-coding downstream 65281 1411693 ~ 1413647 (-)
G92413 secisbp2l non-coding downstream 123951 1351206 ~ 1354977 (-)
G92415 NA non-coding downstream 134100 1344550 ~ 1344828 (-)
G92421 NA non-coding downstream 137547 1336891 ~ 1341381 (-)
G92488 NA non-coding upstream 267 1492294 ~ 1510364 (-)
G92496 NA non-coding upstream 43790 1535817 ~ 1632709 (-)
LOC117597535 NA non-coding upstream 47003 1539030 ~ 1541212 (-)
G92491 myef2 non-coding upstream 52505 1544532 ~ 1559181 (-)
G92489 NA non-coding upstream 73053 1565080 ~ 1566502 (-)
bloc1s6 bloc1s6 other downstream 186435 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other downstream 252577 1222721 ~ 1226351 (-)
G92340 NA other downstream 489872 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 631993 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 676716 782910 ~ 802212 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 23711 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 119784 1611811 ~ 1648286 (-)
G92531 NA other upstream 276378 1768405 ~ 1768795 (-)
LOC113534649 LOC108264477 other upstream 503004 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 543914 2035941 ~ 2130790 (-)

Expression


Co-expression Network