LOC113534540 (LOC108264127,LOC108264128,LOC108264184,LOC108264136,LOC108264116,LOC108264183,LOC108264134)


Basic Information

Item Value
gene id LOC113534540
gene name LOC108264127,LOC108264128,LOC108264184,LOC108264136,LOC108264116,LOC108264183,LOC108264134
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3879357 ~ 3882450 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305407.1
CTCAGCAAAGATGGGGATCTCCTGATTGGTGGTATCTTTTCTCTCCACGTCAAATGGGAACAGACAACACATGTCTTTACATCTGAGCCCTGGCAACCAAAATGCAGAAGTTTAAGCCTCCATGAATTTCAAAATGTACAAACAATGTTATTTGCCATTGAGGAAATCAACAACAGAACTGATATTCTTCCTGGGGTCAAATTGGGTTATAAAATTTATGATTCCTGTGGATCAGTAGAAATAACTACAAGAGCCTCCTTGTCCTTAGTTAATGAGAATGGAAAAAATACATCTGGAATGTCTTGCTCCAAACCTGATACAGTTCAAGCAATCATAGGTGAAACATACTCCAGTCCCACTATTGCCTTTGCCGCTACTATAGGACCTTTACACATACCTGTGGTCAGTCACTTTGCAACATGTGCATGCCTAAGTGACAGGAAGAAATACCCATCTTTCTTCAGAACTATTCCTAGTGATTACTACCAGAGCAGAGCTTTGGCTAAGTTGGTCAAGCATTTTGGCTGGACATGGGTAGGGGCCCTATGTAGTGATAATGACTATGGGAACAATGGCataaatgaattcattattGCAGCCAAAGAAGAGGGAATCTGTGTTGAGTACTCTAAAgcattcttcaggacagactccagagaaaaaattctgaaattagTTGAGATTATCAAAGCTTCAACCTCCAAAATTATTGTAGCATTTGTCTCATATGCTGACCTTGGGGTTCTTCTAAAGGAAATGGCCTTACAGAACTTGACTGGGTTTCAGTGGATTGGAAGTGAGTCCTGGATTACTGTGGACATAAACCCAGCTAATGCTCCATGGCAGCATCTTCTGATAGGATCCATGGGATTTTCTATGCCAAAAGCTCAAATCAAGGGCCTAGGGGAATTTCTGACCAAGCTTAATCCAGCTTCTGATGCAGCTATTTACAAAGAATTGTGGGAGACAATATTTGAATGTAAGCTTTCCACACAAGAAAATATTGAGatgaaagaaatgtgcaaagGTAATGAAAGTCTCAGACAAGTTCAAAACCTTTATACCGATGTTTCAGCATTACGAATCGCAAATAATGTGTACAAGGCTGTTTACGCTGTGGCTTATGCCCTGCATAACCTTTATAGCTGTTCAAAGAGGGACAGTGGGCAAGAAGGTTCTTTTGCATGTCCAAACATAACAGATAACAAACCATGGCAGGTATTCAATGAGTTGAAGAAACTCCGATTCACAACTACAGCTGGAGAGGATGTATACTTTGATGAGAATGGAGACCCAGCAGCTAGGTATGAACTGCTGAATTGGCAACAAGGTAACGATGGTAAAACAGTCTTTGTTGAAGTGGGCTTCTACGATGGCTCCTTGCAAACACACCTTCAGCTGTCATTTAACAACATCAGTATAGCCTGGGCCCACAACAAACCACAGGTTCCAGTCTCAGTTTGCAGTCCAAGCTGTCCCCGGGGCACGAGGAAGGCTGTGCAGAAAGGAAGGCCAATCTGCTGCTTTGACTGTATACCTTGTGCAGAGGGGGAAATCAGTAATATAACAGATTCTATTACTTGTATCAAGTGCCCACCTGAACTGTGGTCAAATGACAGGAAGGATACCTGTGTATTCAAGCTGGTGGAGTTTCTGTCATTTGAGGAAATAATGGGGATCATTCTTGTATCATTTTCTTTGTTAGGAGTGTCTTTCACCATCTGCATTgctgtaattttctttaaacacaAGGACACACCTATTGTTAGAGCAAATAATTCTGAACTAAGCTTCTTGCTGCtgttctctctgactctgtgtttcctctgttcaCTAACCTTCATTGGTCAGCCTTCTGCATGGTCCTGTATGTTGCGCCACACAGCGTTTGGGACCACGTTCGTCCTCTGCATCTCCTGTGTTCTGGGGAAAACAGTAGTGGTGTTAATGGCCTTCAGGGCTACACTTCCAGGcagtaatgtaatgaaatggtTTGGGCCTCTACAGCAAAGGCTCAGTGTACTTGCTTTCACTCTTTTACAGGTCATTATTTGTGTACTTTGGTTAACAATATCTCCTCCCTTTCCCTACAAAAATATGAAGTACTACAAAGAAAAGATCATATTAGAATGTAATGTAGGCTCGGCTATAGGATTTTGGGCCGTGCTAGGTTACATCGGACTCttggctgtgttgtgttttatattgGCTTTTCTGGCCCGCAAACTACCTGACAATTTCAATGAAGCCAAATTTATCACGTTTAGCATACTCATATTCTGTGCAGTTTGGATCACCTTCATTCCTGCTTATGTCAGCTCTCCTGGAAAATTCACTGTAGCTGTagaaatatttgccattttaacatcaaGCTTTGGTTTACTATTCTGCATATTTGTTCCAAAGTGTTATATAATCATACTGAAGCCAGAGAAGAACACTAAGAAGCAAATCATGGGAAAACCACCTGTTAAATGA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305407.1 True 2478 mRNA 0.41 6 3879357 3882450

Neighbor

gene id symbol gene type direction distance location
LOC113534750 LOC108264129,LOC108264127,LOC108264126,LOC108264128,LOC108264131,LOC108264184,LOC108264130,LOC108264116,LOC108264125,LOC108434034 coding downstream 15209 3861544 ~ 3864148 (-)
LOC113534557 LOC108264127,LOC108264128,LOC108264184,LOC108264136,LOC108264116,LOC108434034,LOC108264183,LOC108264134 coding downstream 25127 3851064 ~ 3854230 (-)
LOC113534751 LOC108264128,LOC108264127,LOC108264116,LOC108264184,LOC108264136,LOC108264183 coding downstream 38961 3837169 ~ 3840396 (-)
LOC117597575 LOC108264128,LOC108264127,LOC108264116,LOC108264184,LOC108264136,LOC108264183 coding downstream 47750 3828706 ~ 3831607 (-)
LOC113534568 LOC108264128,LOC108264127,LOC108264184,LOC108264136,LOC108264116,LOC108264183,LOC108264134 coding downstream 63621 3812967 ~ 3815736 (-)
LOC113534749 LOC108264126,LOC108264127,LOC108264129,LOC108264128,LOC108264131,LOC108264116,LOC108264184,LOC108264125,LOC108264130 coding upstream 1178 3883628 ~ 3891924 (-)
LOC113534546 LOC108264127,LOC108264128,LOC108264136,LOC108264184,LOC108264116,LOC108264183 coding upstream 17461 3899911 ~ 3905480 (-)
LOC113534748 LOC108264127,LOC108264128,LOC108264116,LOC108264184,LOC108264136,LOC108264183 coding upstream 27519 3909969 ~ 3913118 (-)
LOC113534399 LOC108264127,LOC108264128,LOC108264116,LOC108264136,LOC108264184,LOC108434034,LOC108264183,LOC108264134 coding upstream 48104 3930554 ~ 3933690 (-)
LOC113534400 LOC108264127,LOC108264128,LOC108264116,LOC108264184,LOC108264136,LOC108434034,LOC108264183 coding upstream 58047 3940497 ~ 3943963 (-)
G93639 NA non-coding downstream 143965 3735097 ~ 3735392 (-)
G93557 NA non-coding downstream 298151 3579017 ~ 3581206 (-)
G93505 NA non-coding downstream 424986 3425023 ~ 3454371 (-)
LOC117597513 NA non-coding downstream 457199 3406145 ~ 3422158 (-)
G93380 NA non-coding downstream 512162 3366721 ~ 3367195 (-)
LOC113534402 NA non-coding upstream 62537 3944987 ~ 3946376 (-)
G93707 NA non-coding upstream 272807 4155257 ~ 4155497 (-)
G93710 NA non-coding upstream 289623 4172073 ~ 4172312 (-)
G93716 NA non-coding upstream 301305 4183755 ~ 4183993 (-)
LOC117597614 NA non-coding upstream 349010 4231460 ~ 4231831 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 330606 3425718 ~ 3548751 (-)
G93047 NA other downstream 1111059 2759612 ~ 2768298 (-)
G93046 NA other downstream 1128188 2749388 ~ 2751169 (-)
fam214a fam214a other downstream 1748567 2035941 ~ 2130790 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other upstream 188350 4070800 ~ 4073533 (-)
G93711 LOC101487076 other upstream 290838 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 334568 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 1757246 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1831393 5713843 ~ 5786431 (-)

Expression


Co-expression Network