slc24a5 (slc24a5,LOC108412301)


Basic Information

Item Value
gene id slc24a5
gene name slc24a5,LOC108412301
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1566571 ~ 1586370 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305436.1
gtgAGGAGTGGGGgagtgagaggaagaggaggatgagtgAGGAGTGGGGgagtgagaggaagaggaggagagagacggTGCTGAGTGTACTGGGattagtgctgctgttataCGCCGCTGTGCAGCTCGTCTTCTACACcgctacacacactcctgaacatcATCACAGACTGAGACGGGCgctggAGAATGAGAGTCGGTGTGTTCCTCCTCAGTCCTCCGAGTTTCCCGAGGGGTTTTTCACAGAACAGGAGCGTAAAGACGGAGGgattgttatttatttcatcattattttttacatgctGCTCGCCGTCTCTGTAGTCTGTGATGAGTATTTTTTACCATCACTCGAAGTCATCAGCGACCGTCTCGGTCTCTCTCAGGACGTCGCTGGTGCCACTTTCATGGCTGCTGGAAGCTCCGTCCCCGAACTCGTCACCGCCTTTCTGGgtgtgttcGTGACAAAGGGAGATATCGGTGTGAGCACTATCGTGGGCTCCGCTGTTTATAACCTGCTGGGAATCTGCGCTGCATGTGGCCTCTTAAGCTCAGTGGTTAGTCGTCTGAGTTGTTGGCCGTTGTTCAGGGACTGTATCGCCTACGCCATTAGTGTGACCGCTGTGATCGCCATGATCTCTGATAACCAGGTGtactggtatgACGCAGCATGTCTGTTACTGGTGTACGGTGTGTACATCGTGGTGTTGTGTTTTGACGTGAGGATCAGTGAGTATGTGTTGCGGCGTTTCAgtccatgttgtgtgtgtttggggaagaGTGAGGAGGAGCTCTCAGAGAGACGGCCCCTCAGTGGGTGGAGCCACGACCAAGACCATGATGATGTCACAAGTCTGCGAGTCTCCCGCCGCTCACGTACAGACAGTGGCATCTTCCACGAGGACTCATCGTACTCACACCTGTCCCTCAGCCTGCACGGCCTCTCAGACACACCCcgcgagcccCACAGCGTGTTCCGGATGCCCGACAGTGATGTGAAGCGTATATTTTGGGTGTTGTCGGTGCCTGTGATGGTGCTGCTCTACGTTACGGTACCTGACTGCAGGAAACGGTTCTGGAAGAAGTTCTACATGCTGACGTTCTTCATGGCTGCCGTGTGGATCGCCGCCTTCACCTACGTGCTCGTCTGGATGGTCACCATCGTGGgagagacactggagattcctgaCACGGTGATGGGGCTTACACTGTTAGCAGCAGGAACCAGCATCCCGGATACGATCGCTAGCGTGATGGTGGCTCGAGAGGGTAAAGGAGACATGGCCATGTCCAACATCGTGGGCTCTAACGTGTTTGACATGCTGTGTCTGGGCCTGCCGTGGTTTATAAAGACGGCGCAGGATCACTGACCTCAGATCAGTGGTGGTGAACACAACGGTCTGGTCTTCACCACCTCCTCGCTCCTCATCtccatcctcatcctcttcatcgCCACTCACATCAATGGCTGGAAGCTGGACAGGAAGCTCGGAGCTGCCTGCTTAGTCATCTACTGGATTTAA

Function

symbol description
slc24a5 Predicted to enable calcium, potassium:sodium antiporter activity. Acts upstream of or within melanocyte differentiation and melanocyte migration. Predicted to be located in membrane and trans-Golgi network. Predicted to be integral component of membrane. Is expressed in female organism; male organism; melanocyte; and presumptive retinal pigmented epithelium. Human ortholog(s) of this gene implicated in oculocutaneous albinism type VI. Orthologous to human SLC24A5 (solute carrier family 24 member 5).

NR:

description
PREDICTED: sodium/potassium/calcium exchanger 5

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13753 SLC24A5, NCKX5; solute carrier family 24 (sodium/potassium/calcium exchanger), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305436.1 True 1520 mRNA 0.54 9 1566571 1586370

Neighbor

gene id symbol gene type direction distance location
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding downstream 74544 1478928 ~ 1492027 (-)
dut dut,LOC102779749 coding downstream 96900 1462743 ~ 1469671 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding downstream 251916 1294052 ~ 1314655 (-)
spata5l1 spata5l1 coding downstream 331945 1227607 ~ 1234626 (-)
bnc1 bnc1,LOC106591559 coding downstream 416774 1125631 ~ 1149797 (-)
bcl2l10 NA coding upstream 278213 1864583 ~ 1876045 (-)
gnb5b gnb5,gnb5b,LOC107588534,LOC107700591,LOC107704270,LOC106562494 coding upstream 295461 1881831 ~ 1904411 (-)
myo5aa myo5a,myo5aa coding upstream 320148 1906518 ~ 1984333 (-)
arpp19a arpp19,LOC108264505,LOC108413875,LOC103358163 coding upstream 401003 1987373 ~ 1992487 (-)
LOC113534648 LOC108264479 coding upstream 433487 2019857 ~ 2033455 (-)
G92489 NA non-coding downstream 69 1565080 ~ 1566502 (-)
G92491 myef2 non-coding downstream 7390 1544532 ~ 1559181 (-)
LOC117597535 NA non-coding downstream 25359 1539030 ~ 1541212 (-)
G92488 NA non-coding downstream 56207 1492294 ~ 1510364 (-)
G92463 NA non-coding downstream 150067 1416082 ~ 1416504 (-)
G92501 NA non-coding upstream 10804 1597174 ~ 1648953 (-)
G92494 NA non-coding upstream 32246 1618616 ~ 1619113 (-)
G92505 NA non-coding upstream 37823 1624193 ~ 1624519 (-)
G92510 NA non-coding upstream 54319 1640689 ~ 1642945 (-)
G92512 NA non-coding upstream 75072 1661442 ~ 1661843 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other downstream 35509 1515738 ~ 1531062 (-)
bloc1s6 bloc1s6 other downstream 274078 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other downstream 340220 1222721 ~ 1226351 (-)
G92340 NA other downstream 577515 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 719636 835116 ~ 846935 (-)
sema6dl sema6d other upstream 25441 1611811 ~ 1648286 (-)
G92531 NA other upstream 182035 1768405 ~ 1768795 (-)
LOC113534649 LOC108264477 other upstream 408661 1995031 ~ 2014965 (-)
fam214a fam214a other upstream 449571 2035941 ~ 2130790 (-)
onecut1 onecut1 other upstream 505364 2091734 ~ 2109935 (-)

Expression


Co-expression Network