hdgfl3 (LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351)


Basic Information

Item Value
gene id hdgfl3
gene name LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1103951 ~ 1116054 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305471.1
ttttttttttttcattcccgggcctttctctctctctctctctctctctctcttttcattatttatttccgTTATTGATGGTGGGAGATTTCCGCGCGTGCACGAATCGCGTGGTGACATTTGTGACATTTTGGGTGTTTTCCGAGCGCGCGCCATGGCTCGGCCGCGACCCCGCGACTATAAAGCAGGAGATCTGGTTTTCGCCAAGATGAAGGGCTACCCGCACTGGCCCGCGAGGaTTGATGAGCTGCCAGAGGGAGCTGTGAAGCCTCCTGCTAATAAATATCCCATCTTCTTCTTTGGCACTCATGAGacTGCGTTCCTCGGTCCTAAAGATCTGCTGCCGTATAAAGAGTATAAAGAAAAGTTCGGCAAGTCGAATAAGAGGAAAGGCTTCAATGAGGGACTGTGGGAGATCGAGAACAACCCCGGGGTCAAGTTCACCGGCTaccagagcgtgCAGCAGCAGAGCTGGTCAGAGGGGGAGGGGGCTGATGCAGCAGACCGCAGCAGTGAGGGGGAGGAAGGTGAATCCAtcggagaggaagaggaaggaaagGTGAAGGGCGAAAAGGTCGGATCCAAACGGAAAAAGACCGCATCCTCAAAGaaGTCAAAGCTGGTCAGGAAGTGCTCggctgaggaggaagaggagaaggacGGTAAAGAAGACGAGGAGAAGAGAGACAACGATAACGACCTGCAGAACTCAGACAAGAAGACGTGCTGTCCAGGAcagAACCAGTTGCTGCGAGAGGAACATTAGATCCTGAAGAACATCTGATCATGTTGTGGTTTGTTCTGTGATGTTGGAAATGTAACTCGCTTTGACATCAtcaacataaaaaagaaaagaaaagaaaaacattatgttataataaaatcactgatcagtaaataatattaaagcCACAAGTACAGAGAAATTCATCCACGTCTCATCAGCAGAGCCAAGCTGAAGCTAACGCACGTAGAATTAAAGGGGCGGTAAGCGATATTCTCCATTACAGATGCAGGTTGGGAAGTTGTGTTAGAAGGCGGTTTTGTTGTTCCACGTCGCAGAgtcagtgtgtaaagtgtgaatTCGGCTGAAATGTTGCTTACTGCCCCTTTAATGTGCAGTGTTAATGAACACTTTATCAGATGTAATATAGTCATCAGTTTAGCGTAATGTTCTAGCTGTAGCTGTTATAGCTGGAGTGTTCGCCTGGAAACCAGCCCACTCTCTCTCCTTACACCCTCTGACCTTTCACTCTGAACTCTGACCTTTCACCCTCAACCCTTTTCATCTTAATCCTTCACTTTTTACACTAAACCCTGATCTTTGACCTTTCACCCCAACGTTTCATCATAAACCCTGACTGTtcacccccaaccccaaccttTGTCTCAAATGCTGACCTTTCACCCTAACCTGACCTTTGCCCTTGAATATTAACCTTGACCCTTAAACATAACACTGGTCATTTTTTTGCTGCCTTTCTGTAAGCTTTTACTTTAACACTATCTTTTAAATGTAAgctctgacctttgaccctaaccctgacctttTAACCCTGAGGTTTTTTTCTTGCTAACCCTTAGGTTTGACCTTAAGCTCCTTAACTAAACCCCTGGACGTTTACTCTAAGCCCTAATCGTTAACCCTAATGCTGACCTTTCACCCTGACCTGACCTTTGTCCTTAATTTTGACCTTTTGCcctattactgtttttttcttcatgacctctgacctctgtctGTAACCTTTGTTCTAACACTACCCTTTAAACCTAAACTCCTATCTTTGACCTTAGCCTTGACCTTTCACCTCAAACCCTGACCCTCTTTCTGAAACCTTTACGGTAAAAAACTTCCTTTTGAACCTTTGACTTTTCAACCCAGATTTTTTTTACCACAATCTTTACTTTGTTTTGCTAACCTTAACCCTTGACCTTAACCCTTGACCTTTCATCATTTACCTTAAACCCTAATATTTGACCCTAGCCTTGACCTTTCCCCTTAAACCCCTGCCCTCTTTCAGTAACTTACCCTAAATTACCCTAACCCTACCCCCTGTACCTAAACTCTGACCTTTCAACCCAGGGGCTTTACCCTAAACCTTCACGTTTCTTACCCTAACctatgacctttgaccttaaAAAATTTCATTACTCTTAACCCTAACCTGTCACTCTGACCTTTCAGTCAAACTCTGACCTTTTACCTTAAACTGTCATCTTTTATTTCAACCCCTGATCTTTATCGGCACTCTGCAGTCTCTTCTTTGATCTTTTACctgctgacctttgaccctgtcCATGCTGTGTGTATAAACCCGTGAAAGACAGgccgcgagagagagagagagagagagagagagtgatgagtATAAATAGTGGTTTTGAGTAACACACTGTTGATGGTTTGAGTTCATGTTGCTGTAGAATTCGGGACCACGCTAACAGATAAATGctcgtttgttttttttgttgttttttttttctttttttttcttcttcttttttttttataaataaagtgacTTCTGGTTCCTGTGTCTGTGCGCTCGCTTGTTTCTTAGCTCTTTAGTGGCATGCTGTCTGTCCTATTAATTCTGTAAGATAGAAATCATTCGGAGATTAGCGCTGAGTCTGAGGCAGGAAGTGTCTCCTAACGTTTAGCACTTCATAACGTCATCACTCAACTGAAGACGCTCTTTTACTTCCTGATCTGTGtttatataaagaatatattctatttatttttgatgatgGTAGATGACACATCTGTGGTAGGTGTTAGCGCATTCGCATGTCCTGATTTAGTCACATGACACGTGTTTCTGCGTcagtgtgggcggggcttaaagtGATCCTATGACATCATTAGGGAGCCTGCTGGTACAAACAGCCGACTTCCTGTTATATCACGTAATTACACTCGAGCGTCAAgccaaagaataaaaaaaatcttgaggTGATGTCACACAATCGAGTccactgattggctgatgggatTTACCGTAAGCCCCGCCCCTTGTTAACTCGAACATGCCTGTCAGTGAGTAAAATCAGGACGTAGAGATCATCAGTGTAGATTTTTTGCCCCTCCTTATCTTTGTTATGCTCGTTACAGTTCTATCTTACATTTTCAACGTTTGTAGTTCACTGTAAActgtttttcctgtttattcACAAGACTTTTACAGAATAAATTTGTTGGAATGCA
>XM_034305472.1
ttttttttttttcattcccgggcctttctctctctctctctctctctctctcttttcattatttatttccgTTATTGATGGTGGGAGATTTCCGCGCGTGCACGAATCGCGTGGTGACATTTGTGACATTTTGGGTGTTTTCCGAGCGCGCGCCATGGCTCGGCCGCGACCCCGCGACTATAAAGCAGGAGATCTGGTTTTCGCCAAGATGAAGGGCTACCCGCACTGGCCCGCGAGGaTTGATGAGCTGCCAGAGGGAGCTGTGAAGCCTCCTGCTAATAAATATCCCATCTTCTTCTTTGGCACTCATGAGacTGCGTTCCTCGGTCCTAAAGATCTGCTGCCGTATAAAGAGTATAAAGAAAAGTTCGGCAAGTCGAATAAGAGGAAAGGCTTCAATGAGGGACTGTGGGAGATCGAGAACAACCCCGGGGTCAAGTTCACCGGCTaccagagcgtgCAGCAGCAGAGCTGGTCAGAGGGGGAGGGGGCTGATGCAGCAGACCGCAGCAGTGAGGGGGAGGAAGGTGAATCCAtcggagaggaagaggaaggaaagGTGAAGGGCGAAAAGGTCGGATCCAAACGGAAAAAGACCGCATCCTCAAAGaaGTCAAAGCTGGTCAGGAAGTGCTCggctgaggaggaagaggagaaggacGGTAAAGAAGACGAGGAGAAGAGAGACAACGATAACGACCTGCAGAACTCAGACAAGAAGACGTGCTGTCCAGGAAACCAGTTGCTGCGAGAGGAACATTAGATCCTGAAGAACATCTGATCATGTTGTGGTTTGTTCTGTGATGTTGGAAATGTAACTCGCTTTGACATCAtcaacataaaaaagaaaagaaaagaaaaacattatgttataataaaatcactgatcagtaaataatattaaagcCACAAGTACAGAGAAATTCATCCACGTCTCATCAGCAGAGCCAAGCTGAAGCTAACGCACGTAGAATTAAAGGGGCGGTAAGCGATATTCTCCATTACAGATGCAGGTTGGGAAGTTGTGTTAGAAGGCGGTTTTGTTGTTCCACGTCGCAGAgtcagtgtgtaaagtgtgaatTCGGCTGAAATGTTGCTTACTGCCCCTTTAATGTGCAGTGTTAATGAACACTTTATCAGATGTAATATAGTCATCAGTTTAGCGTAATGTTCTAGCTGTAGCTGTTATAGCTGGAGTGTTCGCCTGGAAACCAGCCCACTCTCTCTCCTTACACCCTCTGACCTTTCACTCTGAACTCTGACCTTTCACCCTCAACCCTTTTCATCTTAATCCTTCACTTTTTACACTAAACCCTGATCTTTGACCTTTCACCCCAACGTTTCATCATAAACCCTGACTGTtcacccccaaccccaaccttTGTCTCAAATGCTGACCTTTCACCCTAACCTGACCTTTGCCCTTGAATATTAACCTTGACCCTTAAACATAACACTGGTCATTTTTTTGCTGCCTTTCTGTAAGCTTTTACTTTAACACTATCTTTTAAATGTAAgctctgacctttgaccctaaccctgacctttTAACCCTGAGGTTTTTTTCTTGCTAACCCTTAGGTTTGACCTTAAGCTCCTTAACTAAACCCCTGGACGTTTACTCTAAGCCCTAATCGTTAACCCTAATGCTGACCTTTCACCCTGACCTGACCTTTGTCCTTAATTTTGACCTTTTGCcctattactgtttttttcttcatgacctctgacctctgtctGTAACCTTTGTTCTAACACTACCCTTTAAACCTAAACTCCTATCTTTGACCTTAGCCTTGACCTTTCACCTCAAACCCTGACCCTCTTTCTGAAACCTTTACGGTAAAAAACTTCCTTTTGAACCTTTGACTTTTCAACCCAGATTTTTTTTACCACAATCTTTACTTTGTTTTGCTAACCTTAACCCTTGACCTTAACCCTTGACCTTTCATCATTTACCTTAAACCCTAATATTTGACCCTAGCCTTGACCTTTCCCCTTAAACCCCTGCCCTCTTTCAGTAACTTACCCTAAATTACCCTAACCCTACCCCCTGTACCTAAACTCTGACCTTTCAACCCAGGGGCTTTACCCTAAACCTTCACGTTTCTTACCCTAACctatgacctttgaccttaaAAAATTTCATTACTCTTAACCCTAACCTGTCACTCTGACCTTTCAGTCAAACTCTGACCTTTTACCTTAAACTGTCATCTTTTATTTCAACCCCTGATCTTTATCGGCACTCTGCAGTCTCTTCTTTGATCTTTTACctgctgacctttgaccctgtcCATGCTGTGTGTATAAACCCGTGAAAGACAGgccgcgagagagagagagagagagagagagagtgatgagtATAAATAGTGGTTTTGAGTAACACACTGTTGATGGTTTGAGTTCATGTTGCTGTAGAATTCGGGACCACGCTAACAGATAAATGctcgtttgttttttttgttgttttttttttctttttttttcttcttcttttttttttataaataaagtgacTTCTGGTTCCTGTGTCTGTGCGCTCGCTTGTTTCTTAGCTCTTTAGTGGCATGCTGTCTGTCCTATTAATTCTGTAAGATAGAAATCATTCGGAGATTAGCGCTGAGTCTGAGGCAGGAAGTGTCTCCTAACGTTTAGCACTTCATAACGTCATCACTCAACTGAAGACGCTCTTTTACTTCCTGATCTGTGtttatataaagaatatattctatttatttttgatgatgGTAGATGACACATCTGTGGTAGGTGTTAGCGCATTCGCATGTCCTGATTTAGTCACATGACACGTGTTTCTGCGTcagtgtgggcggggcttaaagtGATCCTATGACATCATTAGGGAGCCTGCTGGTACAAACAGCCGACTTCCTGTTATATCACGTAATTACACTCGAGCGTCAAgccaaagaataaaaaaaatcttgaggTGATGTCACACAATCGAGTccactgattggctgatgggatTTACCGTAAGCCCCGCCCCTTGTTAACTCGAACATGCCTGTCAGTGAGTAAAATCAGGACGTAGAGATCATCAGTGTAGATTTTTTGCCCCTCCTTATCTTTGTTATGCTCGTTACAGTTCTATCTTACATTTTCAACGTTTGTAGTTCACTGTAAActgtttttcctgtttattcACAAGACTTTTACAGAATAAATTTGTTGGAATGCA

Function

NR:

description
PREDICTED: hepatoma-derived growth factor-related protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305471.1 True 3211 mRNA 0.43 6 1103951 1116054
XM_034305472.1 False 3208 mRNA 0.43 6 1103951 1116054

Neighbor

gene id symbol gene type direction distance location
LOC113526880 NA coding downstream 18638 1082696 ~ 1085313 (-)
homer2 homer2,LOC108414443 coding downstream 29048 1056705 ~ 1074903 (-)
LOC117597537 fsd2 coding downstream 47684 1034949 ~ 1056267 (-)
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 404174 695169 ~ 699777 (-)
LOC113534387 NA coding downstream 443397 523454 ~ 660554 (-)
bnc1 bnc1,LOC106591559 coding upstream 9577 1125631 ~ 1149797 (-)
spata5l1 spata5l1 coding upstream 111553 1227607 ~ 1234626 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding upstream 177998 1294052 ~ 1314655 (-)
dut dut,LOC102779749 coding upstream 346689 1462743 ~ 1469671 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding upstream 362874 1478928 ~ 1492027 (-)
G92359 NA non-coding downstream 87769 1014447 ~ 1016182 (-)
G92343 NA non-coding downstream 119430 982501 ~ 984521 (-)
G92282 LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478 non-coding downstream 127402 931958 ~ 976549 (-)
G92338 NA non-coding downstream 140741 962489 ~ 963210 (-)
G92321 NA non-coding downstream 189023 911310 ~ 914928 (-)
G92294 NA non-coding upstream 33485 1149539 ~ 1216437 (-)
G92412 NA non-coding upstream 172647 1288701 ~ 1295898 (-)
G92421 NA non-coding upstream 220837 1336891 ~ 1341381 (-)
G92415 NA non-coding upstream 228496 1344550 ~ 1344828 (-)
G92413 secisbp2l non-coding upstream 235152 1351206 ~ 1354977 (-)
G92340 NA other downstream 114895 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 257016 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 301739 782910 ~ 802212 (-)
G92240 NA other downstream 356421 706750 ~ 747530 (-)
dmxl2 dmxl2 other downstream 780011 266207 ~ 323940 (-)
bloc1s6 bloc1s6 other upstream 81081 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 106667 1222721 ~ 1226351 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 399684 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 495757 1611811 ~ 1648286 (-)
G92531 NA other upstream 652351 1768405 ~ 1768795 (-)

Expression


Co-expression Network