bnc1 (bnc1,LOC106591559)


Basic Information

Item Value
gene id bnc1
gene name bnc1,LOC106591559
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1125631 ~ 1149797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305508.1
GAGGCGCGCTGAGCTGCAGTGTGGCGCACCATGTCTCAGGCGATTTGCTGCACGCTGGTGAACTGTACCTGCGACAGTTTCAGACCCGGAAAGCTGAAACGTCGTCAGTGTGAGAACTGCAGGCACGGATGGGTCGCTCACGctctgaGCAAGCTGAAGATGCAGCACGCGTATGACGGAGGCCAGGTGGAGATCGTTCACTCCAACGTGGTGTTTGATATCTGCAGTTTGATGCTGTACGGTACGCAGGCCATCCCGGTGCGGCTGAAGATCCTGCTCGATCGACTGTTCAGCGTCCTGAAGCAGGAAGAAGTCATCAAAATCCTCAACGCGCTCGACTGGACGCTGCAGGACTACATACGAGGATACGTCCtgcagGATGTGGCTGGCAAAGTCCTGGACCGCTGGGCCATCATGACCTTCGAGGAGGAAATTGCGACACTGCAGCAGTTCCTCCGCTTCGGAGAGACAAAGTCCATTGTCGAGCTGATGGCCCTGCAGGACAAAGAAGGGCAGGCGATCATCGTGCCGACAGTTAGAGCGAACTCGGACATCCGTAGCTTCATAGAGAGCAGCATGCAGCGTCCATCGGTGCCGCCCACAACGGAGCCTCTGAGCAGAAACAATGGCCACCACTTTGAGAGTTTGGTCAACAACATGGCCTTCATGCTGCCTCTGCAGTTGCTCAACTCTGTTCCTGCACCGCTGCTCAGGTCCAGAGCAGATTCCCGCCAGCAGGATGTTTCGGCACGACCCGAAATTCTGGATTCAAACCCTGACACCTCCTCTCACTTCACCTCTGATATAGAAAGAGAAGATATACCCATGGAGAGAGCAAGCACCAATTTAGAATCAGATGACTTCACATTGAGCGATAACTATTCCTCACCCTCGACACCTTGCACGCCCTCAATCAGCTCCGATATCGCCCAAGTGTCGCCGGAGTCGAAAATCCGCCCAGGAGTTGGGATGAAAAAAGGCCGTGTTTTCTGCAGTGCCTGTGAAAAGACCTTTTATGACAAAGGAACACTGAAGATCCACTACAATGCTGTTCACCTCAAGATCAAGCACAAGTGCACTATCGAGGGATGCAACATGGTCTTCAGCTCGTTGAGAAGCCGCAACCGGCACAGCGCCAACCCGAACCCACGCCTGCACATGCCCATGAATCGAAACAATCGGGACAGGGATGTGAGGGATGGACTGAGTGGGGGGGATGAGGCAGAAAAGCGGGACCTCAGCAGGCCTGTCTCCAGCTACATCAGCAATTCTGAGTCCAAACTGCACAGCTCCTTTCCAAGCATCAGCCACAGCGGGATTGTCTTCCCCAACCTAAAGACTGTGCAGCCAGTGCTGCCTTTCTACCGCAGCCTGGTGACGCCTGCTGAGCTTGCCAACACACCTGGAAATCTGCCCTCCCTGCCCCTACTGTCCTCTTCTTCTGTGCCTGTAAGCGTAGGAGACATGGAGAGCAATGCCGAACCTGTGCCCAAGAAGAAATCCCGTAAATCCAGCATGCCCATAAAGATTGAGAAAGATGAGTTGGAAGAGCGAAGCAGCTccaataatgatgatgatgacgatccTCCTGCCAGTATGGACTCTGGGATGGATTGTATGGTAAAGACAGAATGTGATGAGCATGGTGTTGTTCATCCCTCAATCCAGCCCTCTGTCCTCACCCATTCTTCCCATACAGAAGAACTACAAACAGAGGACAAACACCAAGCCCAGGGGTGCAGTCTCACCCACTCGCTGTCTTCCTTCAGCAACACGCAAAGAGACTTACTTGACTTTGGAGACCAAACCTGCAGCGAAGACTTGGATCTCCGACCCACTGGCGAAGTGGCACTAAGCGGCACCCCCTGTGAGTCTGAGGTCCGCACAGACGCCGATGGTGACCTACAGATTGTGTGTGCAGATGATGAAGACGAGCTTCTCCATCACTGCGAGAGTTGCAATAAGACCTTCAAAAACTCCTACAGTGCCAAAATGCATTACCGCAGCGTCCACTTGAAGGAAATGCACATGTGCACCGTAGCAGGCTGCAACGCCGCTTTCCCGTCCCGCAGGAGCAGAGACAGACACAGTGCAAATTTGAATTTACATCACAAGCTGTTGACCAAAGATCACTACGTCTTCACTCCGTCCTGCAGAGACATCTCCGCTGATTCTGAATTCCCTCCTAAAGATCCTCTGAGCCAGACGTCTGTTATCTTCAAGAGCACAAACCGCATGGGCCTTGTGTTTCCCATGAGCAAATCCTCTGATAGCGTAGAGGATCCGGTGGAGGACGAGGCCGTGTTGGACCTAAGCACCAGAGGAAGTGGTCACTCTTCTTCCTGGGACTCAGATGcaggcagtgaggaggagcTCCCCATGGAGGACAGCGATGAGAACGAGAGTTGCGACGGGCTGAGTTCCAGTGTGGTCAGTCTCGGGCAGCAGGTCAACAACTCATCTTCACCCATCACCTGCCACGTCTGCCAGAAGGTTTACAGCAACAAGGGCACATTCAGGGCGCACTACAAAACCGTGCACCTTCGGCTCCTGCACAAGTGCAAGGTACCAGGGTGTGACACAACGTTCTCTTCCGTCCGGAGCCGCAATCGACACAGCCAGAACCCAAATTTACACCGGAACCTTCCGACAAACAACACCACCGTCAATCAGGAGTAGTGATAAATATACACACGGATGGTGAAATGAACCCTAATAATGAGCACTTGTGTGTAAGTGGAAAAGCACAGGCCTTCATAGATTCTACCTAAAATTCACAATGATGAACTGTTCCGAGGGGCTCAGAAGAGTGTTTTTTTCATCTTGTGCATATAATTTACAGCGCAATTTGTGGTTTCTTGCGATGGGCAAAACTTCAAGTAGCTAAGATTTCGTTAAATTCAagtgaatgaaaaatatataatgtgaatATGCTCTGTATAACAGAACAAAACATTGTTCAAGAAATTATTAACACTGGGCAAGTTGCTCTTTATGGAGATATTTTCTAAGGTTACAGCCTTTAGACAAAACACTTCAGTCAATATAACGGTACAGGAAATGGATTAATCGGCGATAATTGGCCACAAGTACCACataccctaaaccctaaaccttGGAAGGTGGTGGTGATGAGGTGGAAAATTTTAGACTGTCCAAAAAGCCACAGCTGAGAGGCTCTATGTGGTTGcatgactttatttcatttgcgTTTATGTTATTTATTCCACTGCAAATTATTTCCATACAGAAAGAGTTCCAGTTCAAATGAACGTACAGACTTTTTACAaattgtcgttgttgttgttgttgttgtttttaatcgAACCTTTTTGCATTTGACGTGTATGAAAATTACTTGGATGGAAACTTGACTCATCACAACAATACTTCCTGTAACCTGGTGAATCAGTCTCATATCTAATCTAGAAATCAAAATTTAGCCTGAAGCAGAAGCACatcatgttaaaaatgtatttttactaCATTTCTAAACACTACCAAACACTTAAACAGCTTGATTTCAACGCTGTTAGTGTttgtttattacaaaaaaaagcattttcagtgaTACAGCTGATTtggcactttcttttttttgcagaataaGCTCCAGAGTTCAAATAACAAACCTGTCAGAACTATTCAGTACTTAACTAGCACaaactatcattattattattattattattattattattattgttcaatTTCATTACAATCACAGCGACATGACAATCACTATGTATGAGGAAAGATTAACCAGAACAAAGTTTTAGTAAAATTTATAGGGCGAGCAACAAACCTAGCAGTAAAGCTAACACAAAATGTAGCTGTACAGCTAGCAGTAAGTCAAGCAATAAGGAAATTACAGAAACAAGGTAAAAAAGCAGTATGGCTAACAGGAAGGCTAGTGGTATAGTTAATAGCAGTACAGCTAGTAATAGTGTCAGTAAGACTACCTGGTTTTAGCAGTAAACCAACAGCAAAACTTACTATATAGCGAGTATAGCAATACGATTAGCATGAAACCTGCTTGTGATTACTAGCTGGTAACATGCTAGTGAGATTTCATTACTGcattgaaaacaaaatggttgATTAGAACTCCTAAATTGGTCACTTTTTTCCACTCCAGTATTATCATTATACAAAATTCCCACTCATTTTGATTATATGATGTAATATTCGTTGTGccaaatcagttttttttttttatttatttcctgaaaTAAGCCCCAACGTTAAGTTTCAGTGATCACGCGGAAGGGAGAGTTCTGAACGTGCTGCACTTGCTAAAAAATCCATTTCATAAATATAGTACTGGATATATCACAGACACAAGTTTTAATTTAACACGTTAAAACGTTTAAAAGTGTGAATACGATACCGAAGTATCCTGCCACCTGACTGCGACCTGCTGCATTAGCAAACGCACGATCAGCAGCATGACAGTAATCCGTGTTAAACTTCAGAACAGTGACGGAGTGAACGTGGACAGTGAAGTCATCAACATACGTACAACTACTGCGGACCAAATGGTTTTACTTAccgtattttttttaatataaaacaagaattttttcttctctctatcACATGCTGTGTAAATGTTATCATTTTCACATTAGACTAGCTACAAAACACcactttgtttattgtttttttttgttttgtttttttacggTAGCCTTTCTACTACGGCAGTTACGGTACATTTGGCCTTATTTGCATAATACTTGTTTACATTTCGAAACCACTTGTAACAAGAAACTTCGGAAAGTGTGTAACGTTCATGATTTATGAGATACAAGCAGGAGGTTCTTagatattatttacagaccATCCATCAAacaagggggcggagctaaaaacaggaagtagagcATTGCTAGGTCATAATGGACAGCTTCTGCAACTGTGGTCATCtaataacaaataacagaaaGTATTTGCCCCCATCTACCCCACACCAATCACTGCGGAAGTGGGTGGGACATTTGGATGTTTAAGTTTATTACCCAAATcgccccccaacacacacacacacacacacacacacacacacacacacctccccctGTTTAACAAGGGAGAATTAAAAGATAGAAACAGGTcgttttctgatttttttctcctgagtGGATCTTACAGTCCACGTTAAATTTAGAGCATCGTGTAGGAGGTGCTACAGATTTATCCAGAGTTTCATAGCGTGTGTTAAACTGAAAGactcaaatatttaaaatataaattaaaaaaacaaacacaatgctTCATAATTCCCTacagtatttcattttttttttacttgtcctgaagatattttaaacactgtacataacCATACACGTGGTCTGGAAAATGTCACCattgtgttcattttattttcctctaattCCTGGTCATGTGATTCCAGTGCTTGATTTGAATTAAACTGTACCTTGTGGgtcgagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcagttgaAGGTGCAGGATTCACCTGGTGTCCGATGTTCAGTAATATAACACGTTGACGTTTCCTCATGATTGTTGTTTTATCGTTTCGGGATATTTTGTGGCATTCCATGAATTCTGTTGTGTTGCTGTTGTGTAAATTATTgtacagtgttgtgttgttttttttctaatttgttcTTATAAACACTAAAGCTGACCAAAGATTCTTCATCATAAACGAgcagtattattaataataataataataataacaatagtaataatgaaTCTCTTTAAAGATGCagtctgtgtttgtattttgcGAGATTTTGTTACGATTGGAAAAACAGAGCTGTTTATTGTTGTAGTGTAGCTGGGCGTACGCTACACGATGGTTAGCCTGATTTTTATCCCCTTTCCCAGATCTCCAACCACAAACCTAGCAAAACCTAGCTTAGCAATTTAATACCAACCACGAGAGTTTACctgacattagctagcttgttagcgAAATTCATTAGATTCTTAATTACAAAaggcattagctagctagttttgcaacagtgttatttatattagctagctaacaacatAATGTCAATCATTAACAAACTTTATcctgttatatatattatataattatttgattaaaacTAGTATTTTAGGCTTCAGTattttaagcttaaaaaaaagtcaaaagaaaCACTCCTGATGATGATTGGCTGGTCAGATTTAACTGAAGCTCCGCCCTCATTGACCCAGGCAAACTCGGGAACGTGTCACACCCTGGCATCGTACAAACAAATATTCTAAAAATAGCAATATAAGCTAAGCTAGCAGTCTCccaaaacacaacactgcactaatgttagctagctaactattcGGATTTAGCTTAACAGTAGCAATTGGTGTATACGGTTTAAAATAACATATTTGTTAAAATTACACATTATACTAGTTTAGCAATATTAGTTAAGCTAGTTAGCTGCAAACAATAGGTTTTGTTTATCTTTTCACCAGTATCTAGCTTCAGAACCAACCTAGCTAGCTTTATGCTAATGCGTTTATTATGTATAGCGTACGCCCAGTTACAcatgtatgaaatgaaatgtaaaaactcctacacacacacacacacacacacacacacacgcgtttTTACAGTATTGTTGTCATCATGTCACATTTATGCCACGTCTGCtcataaacaatttaaaaatgttcatgtttttattcttgATTCGTTGTGACAATAATAAAAAGCCATGATTTCA

Function

symbol description
bnc1 Is expressed in several structures, including ectoderm; mesoderm; nervous system; otic vesicle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 16. Orthologous to human BNC1 (basonuclin 1).

NR:

description
PREDICTED: zinc finger protein basonuclin-1

GO: NA

KEGG:

id description
K24146 BNC; zinc finger protein basonuclin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305508.1 True 6750 mRNA 0.42 5 1125631 1149797

Neighbor

gene id symbol gene type direction distance location
hdgfl3 LOC108264501,LOC108414447,LOC105889083,LOC101465811,LOC107726337,LOC103366351 coding downstream 9577 1103951 ~ 1116054 (-)
LOC113526880 NA coding downstream 40318 1082696 ~ 1085313 (-)
homer2 homer2,LOC108414443 coding downstream 50728 1056705 ~ 1074903 (-)
LOC117597537 fsd2 coding downstream 69364 1034949 ~ 1056267 (-)
mibp2 LOC108264499,LOC108412679,LOC103036025,LOC107713061,LOC107097782,LOC103353206 coding downstream 425854 695169 ~ 699777 (-)
spata5l1 spata5l1 coding upstream 77810 1227607 ~ 1234626 (-)
LOC113526639 LOC108264476,LOC108412674,LOC107381730 coding upstream 144255 1294052 ~ 1314655 (-)
dut dut,LOC102779749 coding upstream 312946 1462743 ~ 1469671 (-)
LOC113525461 slc12a1,LOC108412716,LOC107739981 coding upstream 329131 1478928 ~ 1492027 (-)
slc24a5 slc24a5,LOC108412301 coding upstream 416774 1566571 ~ 1586370 (-)
G92359 NA non-coding downstream 109449 1014447 ~ 1016182 (-)
G92343 NA non-coding downstream 141110 982501 ~ 984521 (-)
G92282 LOC107727398,LOC101487895,LOC102301404,LOC102779878,LOC102211478 non-coding downstream 149082 931958 ~ 976549 (-)
G92338 NA non-coding downstream 162421 962489 ~ 963210 (-)
G92321 NA non-coding downstream 210703 911310 ~ 914928 (-)
G92412 NA non-coding upstream 138904 1288701 ~ 1295898 (-)
G92421 NA non-coding upstream 187094 1336891 ~ 1341381 (-)
G92415 NA non-coding upstream 194753 1344550 ~ 1344828 (-)
G92413 secisbp2l non-coding upstream 201409 1351206 ~ 1354977 (-)
G92459 NA non-coding upstream 261896 1411693 ~ 1413647 (-)
G92340 NA other downstream 136575 982067 ~ 989056 (-)
slc27a2a LOC108264486 other downstream 278696 835116 ~ 846935 (-)
usp8 LOC107665382,LOC107595392 other downstream 323419 782910 ~ 802212 (-)
G92240 NA other downstream 378101 706750 ~ 747530 (-)
dmxl2 dmxl2 other downstream 801691 266207 ~ 323940 (-)
bloc1s6 bloc1s6 other upstream 47338 1197135 ~ 1292493 (-)
c6h15orf48 c4h15orf48,clg1h15orf48,csgr07h15orf48,clg23h15orf48,LOC107085327,LOC108251191,LOC106924773 other upstream 72924 1222721 ~ 1226351 (-)
LOC113525562 slc12a1,LOC108412716,LOC108229397 other upstream 365941 1515738 ~ 1531062 (-)
sema6dl sema6d other upstream 462014 1611811 ~ 1648286 (-)
G92531 NA other upstream 618608 1768405 ~ 1768795 (-)

Expression


Co-expression Network