LOC117597607


Basic Information

Item Value
gene id LOC117597607
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25295458 ~ 25301413 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305513.1
acgcacgtacacacacacactctctctctctcactctttctctctctcatgggCGTAGCTTCCTttccaaaagagaaaaaatacagagaagGCATTTTGTCGTCGTTGATATAGTTGGGAACCGTTATAAGTAAAAGAAGCCAAGACGTGATCTTCGCATGCTGCTGTATAACAGGGCAGAAGAAGCCTCCTCAAAGCACTGGACTTTGTCAAGGATGTTCAGAAACCTTCtcattgtttttatgtttgtctACATTACTTCCATCTATACTGCACAAAAAGATGTTTATAAATACAAGCCTATTTACCCTCACTGGAAAAAGAAGCAGCCAGCCTTTGCATGTGGTGTAACGGTGCAAAATGATCCGATCATTAAAGTCAACAATCTTAAAACATTTATGGTCGGCTCCTACATAGAGCACCGTAAGGAGGTGAAAATGATACGGACAATCACTATAATGTTTCGTAGTGAAAACGCAGAGTATCACTGCTTGTTGTGCTGCAACGGACTGAACGTGTCTGTACCCGCTACACGCGACATTCACTCTGACCACTTTGGGTTTGAATACGGCACGGCTTATGTTACCTGCAAAGTACCGGAAACGTGTACAAAACCGACACATGTGGCGATCACTTCCCGATCACCTGAAGAGGATGGATCCTTGCAGGACATACAAGCATTCCAACCTGTTAGAAAtcaggaggaaaagaaagactTTCCTTACGATTTTACAGTTTGCATTTCTGTCATGTATGATTATGACAATGTGCTGGAGCTTGTGCAGGCCATGGAGATGTTCAAAATACTTGGTGTCCAGAAGGTAGCTATTTACAAAACCAACTGCACTTCTGATACACAGAAAGTCCTGGATTACTACGTCAGGCAGAACTTTGTGGAGATCATCCCCTGGAACCTAACACCACACAACATCACTGTGTCCAGGGGCTGGAAGAAGTCGGATTCACCAGGGGAGCTGCATTACTTCGGCCAAATTCCGGCACTCAATGATTGTGTGTATCGTTACATGTACCAGAGTCGCTATGTAGCTCTGCAAAACTTGGAAGAACTTATTCTACCTATGAAATCAAAAAACTGGCCAGAGCTCCTGCCTGAACTGGAGAGGCAATACGGTCAGATGGGCAGCTTTGAGTTTGAGAatcattattttcctctttCCATCAAGGATTCAAGCGCTAAGTATTCACCAGACTCCTGGAAGAAGGTTAGGGGAGTAAACATTTTAGAACATATCACTAGAATAAGCAATGATCCTAACCAGTTCAATAACATTAAAGTCATTGTTAATCCTCGCTTAGTGTTCAAGGCTACAGTCCACGGCATTTTTCCGTCCATTAATGGTAGTGTCAGAGTGGACCCTGGCATTGCCCGTATGTATAACATGAGAAGCATTCCAAATGAAATTGTGGCAAAACGTTTCCAAATACGGGACCCGCATCTCAGGGACTACGCGGAGAGTCTGATCCCGGTCGTTTCTAAAGTCCTAGAGGAAGCACTAGGCGATTACTAAAGTGCATAACTAATAAATTTGATAAATCTTAACAAAAGAAGATACTAAATTTGATTATAAGTttagtaaaaaaagaaattttatgtAAGTATTCCATGACACTgtctaaaaatgcaaaatactcTCTAATAAATTTAGCTGGAGGGAAGTTTAGCTGAATGGTGCAAGACAGGAAGCAGTATgggtctttttctttttttgcacagAAAATGAACCACAGACCCTGATAATCTAAACGATAGCTTTAAGTATTTATTCAGGAATCTAAAAATATGCTGGGAAAGTTGTCAGCCAAGGTAACACAAAGCTTATTAACGTCCACTGgaacattatttacaaaaaagcaGTATTGTGATCAAATGTCATCAAAACTGTTTCCAACTAGATTTCTTAGTATTTTGCACACATCCTTTTGATTCTGTAGCTTATAAACGAATCAAGTAACACAACCAAAAATTGCAACCAATTATATCTATTATTTGTGTGAAATTTCAGTTTTGGGCCAGTATTAACTCAAATATATGAgcggaaataagtattcagacacgttcatattttttgttaagATACTTCCTGTGCATATATctacttcaaatttacacatgtaatgtcttttgactttgtatgtattcataagcaaaAACATAGAGAATAATAAGCAATGAGTTGCACTGCAGTCATCTCCATTCCTACATTCCATGAAAAACTTGTCTGCCATAAAGaaaaagcacagagatgcacatctaaaagcatttacacaaatcagatctcttttggaacaatatactctggtcagatgaaacaaaaatagagaTCTTTGGAAATAATTCAGCTTTTTATGTTTAGAGAAAGTAGAGTTGTGtgtatgatcccaagaacatCATATCCACCGTGAAGTGCCTGGGGATGCTTCTCTAGAAGCGTTACTGGGGCGTTACACATAATGGAAGGAAACATGAACGGAGCGATGTACAGCCAAAATAATGCTGCCTTCGTGTGCTACCAGAATTATCCTACTTCCCATTTCTGAAGTGGAAATTACGAATATGTCGTGTTCACATGCTTTGTTGTcggaaagaacatgaaacatgccTGACGCCAGgttcatacatatttctttttccttttttctttttttttacaccataaCACATATTACTCAGCTAGGTAGCTTGATGACCATAATGGAATTTTGGTCAAATTCCATTTGGTCAAAATTTTCATGGTGTAATAATGTACAACATGCATAGAATGGTTGCTGATATAGCACATAAATGAATATgactaaaagaaaaatgaacaaaacctgtCAGTACAGAAACTGTACTCTCCTCCACCATGTTGAAAGTGTAGGAATCCTCCCATCTTGGAGCCTTGGGTGTCAAAATTATCTCAGAGTTTCCCAGTCGTAATTCCGACTTGAGGGGTCATTCATGTGCAACTTCCTAGTGGGATActcatatttacaataattccgatagcacgtgaaggcagcataactcaagaaggccttACAAGGCCTAAGAAATGCACTGACTTAAATCCCATTGAagatttatggaggatttttaAAGTCAGCACATTGGCTAGGATATTATGTGGAAATTATGTGTCAAAAGacatttgtgtgtaaatttaaagtaaatatattcACAGGAAGTAAGttaaatatcaaaaacaaaagtgtctgaatacttatttccccacACTGTAAGTTCTGGTTGATGTCGTGACTGACATATGGTCTCTAAGGTAGAATATGGTGTTCCATAGTGTGATATGGGTCAGGTTGAACTCAGATGACTCTGACACTTACCACACTTCAGTGTAAATGCCATTTGTCAGATTGCCATAACTCTATGTACAATGTACATTCCTGCAGTGTTTTTAACTCATCATTGGTGCAACACCAGAAGCAATGCAGACAACATACCCTTTGTCTTCCCTAAATTGTCATTGGATTATATTGTTCTGACATACCCTGAAAGAGCTGATCAGCcaaaaatgagatttttataGTATTTAACTAAAATGTAATTCTAAGTGagagtatatatttattaaatctatttgTGGAAAATAACTATTAATGACAACAATTTATCTCAACGCATTCTCTATTTTTTTGAACACAGATGAAGTATACtatttaataatgcctcatccGCCCTGCTGTCAGTAGAGTGCtggactttttcttttcctgaataagatgttttgtgtgtgtatgtgtatgtgtgtgtgtgagagagagagagaaagagagagagagagcaattaTCAACAGTATTTGTATATACAGAATATTGTATGTATTTTCCATTTGGGCTACGTCAGAtcttttaaatatctttttaattatttcatttgacTGATTACTGCAACCTCAGTTGTAATAGACAATTAAACTCTGAAACTCTGTTCAATCTGCAGTA

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305513.1 True 3964 mRNA 0.38 2 25295458 25301413

Neighbor

gene id symbol gene type direction distance location
rasgrp4 LOC108264291,LOC108428524 coding downstream 113351 25155182 ~ 25182107 (-)
ppp1r13l ppp1r13l coding downstream 160202 25106429 ~ 25135256 (-)
bckdha bckdha,LOC107560150,LOC107758241,LOC107662140 coding downstream 260576 25024817 ~ 25034882 (-)
siae siae coding downstream 518676 24767575 ~ 24776782 (-)
znf296 LOC108264426 coding downstream 544861 24739091 ~ 24750597 (-)
LOC113526534 NA coding upstream 3323 25304736 ~ 25319693 (-)
LOC113526369 LOC108264860 coding upstream 42812 25344225 ~ 25346964 (-)
LOC113526366 LOC108264060,LOC108430275 coding upstream 538057 25839470 ~ 25870271 (-)
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding upstream 588886 25890299 ~ 25905340 (-)
cd276 cd276 coding upstream 892637 26194050 ~ 26292607 (-)
G104750 NA non-coding downstream 50214 25243472 ~ 25245244 (-)
G104747 NA non-coding downstream 53688 25239110 ~ 25241770 (-)
LOC117597583 NA non-coding downstream 80668 25192057 ~ 25214790 (-)
G104694 hnrnpul1 non-coding downstream 144302 25113977 ~ 25151156 (-)
G104320 NA non-coding downstream 761039 24533737 ~ 24534419 (-)
G105092 NA non-coding upstream 531866 25833279 ~ 25836038 (-)
G105219 NA non-coding upstream 786067 26087480 ~ 26087695 (-)
G105379 NA non-coding upstream 1018619 26320032 ~ 26320770 (-)
G105608 NA non-coding upstream 1442290 26743703 ~ 26743960 (-)
G105611 NA non-coding upstream 1444706 26746119 ~ 26746339 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 215946 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 531297 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 584090 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 633480 24631639 ~ 24661978 (-)
sipa1l3 sipa1l3 other downstream 720783 24480302 ~ 24574675 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other upstream 83912 25385325 ~ 25548928 (-)
G105376 NA other upstream 937917 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 1267672 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 1843475 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 4319386 29620799 ~ 29714001 (-)

Expression


Co-expression Network