bckdha (bckdha,LOC107560150,LOC107758241,LOC107662140)


Basic Information

Item Value
gene id bckdha
gene name bckdha,LOC107560150,LOC107758241,LOC107662140
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25024817 ~ 25034882 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305516.1
ATGGCGGCTGTGAGAAACATGCAGAGATTATGGGGTCTCGGTGTGTGTGCGATTCGTCAGCACGCTGCTCTGAAAACATCCAGAGTCCTGCAGCAAAGAGCTTTCCACCTCAATGTTGTAAGGAGCTCAGTGCCAGCAGACGTTCGATTCGAGAAGCCGCAGTTCCCCGGGGCCTCGGCGGAGTTCATTGATCACCTGGAGTTCATCCAACCCAACGTGATCTCAGGAATCCCTGTGTATCGAGTCATGAACAGACAGGGCCAGATCATCAACCCGTCCGAGGATCCACAGCTCTCTAAAGACACAGTGTTGAACTTCTACCAAAAGATGACACTCCTCAACACGATGGATCGCATTCTGTACGAGTCTCAGAGGCAGGGCCGTATCTCGTTCTACATGACCAACTACGGTGAAGAGGGCACTCACATCGGAAGTGCCGCAGCTCTCAACTCCAACGACCTGGTGTTTGGCCAGTACCGAGAAGCAGGAGTGCTGATGTACCGCGGGTTCCCTCTGGATCTGTTCATGGCACAGTGCTATGCTAATGCGGATGACGTGGGGAAGGGCAGGCAGATGCCGGTGCACTACGGCACCAGAGACCTCAACTTCGTGACCATCTCGTCTCCTCTGGCCACTCAGATTCCTCAGGcggcGGGAGCAGCGTACGCTATAAAGCGGGAGAACAGCAACAGAGTGGTGATCTGTTACTTCGGTGAGGGAGCGGCTAGTGAAGGAGACGCCCACGCCGGATTCAACTTCTCTGCCACTCTGGAGTGTCCAATCATTTTCTTCTGCCGCAACAACGGCTACGCCATCTCCACCCCCACCCACGAGCAGTACCGCGGCGACGGCATCGCTGCCCGAGGCCCAGGCTACGGTATGCTGTCTATCCGTGTGGATGGTAACGATGTGTTTGCAGTGTACAACGCTACAAAGGAAGCGCGGCGCAGAGCGGTGGCCGAGAACCAGCCTTTCCTCATCGAGGCCATGACCTACAGGATCGGCCACCACAGCACGAGTGACGACAGCTCGGCTTACCGCTCAGTGGATGAGGTGAACTACTGGGACAAGCAGGACCACCCGATCTCCCGCCTCCGCCACTACATGACCGCGCGCGGCTGGTGGGGTGAGGATGAGGAGCGTGCGTGGAGGAAGCAGTCACGCAAGCTCGTCATGGAGGCCTTCGAAAAAGCCGAACGGCGTCTCAAACCAAATCCGGAGTTAATTTTCACTGACGTCTATAACGAGATGACTCCAGGCTTGACTAAACAGAAAGAGTCCATGTTAAGGCACGTTCAGCAGTACAAGGAGCACTACCCGTTAGACCTGTACGAGAAGTAATCACTCCATTTCAGAACCTAGTCACTTCCCTTAGGCACTTCGATTTAGGGGATTTAGCAGGATGGTGATGCTACAGCTAAAATGGaagatataattaaaaatattcaaataatcaTAAATCCCAGTTACTTTCATGTAGATACCGCTGGTGCATTTAAATCTGGGACTGGGAGAATTAAGACGTGACACATTGAATTGTTCATCTTGTTTGTCGTTTTGAATTGGGATCAGCCCTGTGGTGTAAGAAATGAATTGAGACATGAGCGCTGCACATTTCTCTGTTATATGTTACTATGCCTCCTGGGTTTTGAGAAGCCAACAGACAGGGGGTGTATATATCCGTTTTAGCCGTCTGCCACTAGGGGCCACTCCGTCATGCCCTTTATGATTCTACACTACTGTGGCAGTCTGTGAGGAAATGAGATCATGGCATTAACTGTGCTCTCCACACTGATTGTTATAATTATAAGCCGGTTTCATGCTGATGATCTTTTTAATATGATTGTCATTAACAGAGAGGCATgcattatacacatatacatctATATTGACTTGATCATTTTAACCTCATTACAGAAAGCAGTAGAGTCACACGTTTTCACTCTATTCATGTTTCTGTCTGAATGACTCTTTCCACATCTGTGAATGCGGTTAGTAAAAGAAAAGTCATCAGGATTGAATGAGCTTGCGGGTTTTTGTTCTGTTAAAACTGACTGTATAAGTTGTATAAGGCTGGGTCGATGTATTCTGTGTTCTTTAGTATggattttgaatttgaattaaaccttttctttggtttttaatgaatttaaaacaaACTGCTGCTCTGTCAGATTTCCTTCACTGTTACATTATCTTTAGGCTGACATTTGGTTTGAAGTTGGGGGGATTTACTAGATAAAGtttgaaacatttaaataaaatgcttgtGAAACATTAATACCTTTA

Function

symbol description
bckdha Predicted to enable 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity. Predicted to be involved in branched-chain amino acid catabolic process. Predicted to be part of mitochondrial alpha-ketoglutarate dehydrogenase complex. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human BCKDHA (branched chain keto acid dehydrogenase E1 subunit alpha).

NR:

description
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor molecular_function

KEGG:

id description
K00166 BCKDHA, bkdA1; 2-oxoisovalerate dehydrogenase E1 component alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305516.1 True 2289 mRNA 0.48 9 25024817 25034882

Neighbor

gene id symbol gene type direction distance location
siae siae coding downstream 248035 24767575 ~ 24776782 (-)
znf296 LOC108264426 coding downstream 274220 24739091 ~ 24750597 (-)
capn12 LOC108264620,LOC108433431 coding downstream 297795 24705004 ~ 24727022 (-)
fosb fosb,LOC108433461,LOC107757073,LOC107554470 coding downstream 338567 24680767 ~ 24686250 (-)
c6h19orf47 c4h19orf47 coding downstream 349961 24667061 ~ 24674856 (-)
ppp1r13l ppp1r13l coding upstream 71547 25106429 ~ 25135256 (-)
rasgrp4 LOC108264291,LOC108428524 coding upstream 120300 25155182 ~ 25182107 (-)
LOC117597607 NA coding upstream 260576 25295458 ~ 25301413 (-)
LOC113526534 NA coding upstream 269854 25304736 ~ 25319693 (-)
LOC113526369 LOC108264860 coding upstream 309343 25344225 ~ 25346964 (-)
G104320 NA non-coding downstream 490398 24533737 ~ 24534419 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding downstream 560239 24414900 ~ 24464578 (-)
G103820 NA non-coding downstream 1449138 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 1511489 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 1694716 23329676 ~ 23330101 (-)
G104694 hnrnpul1 non-coding upstream 79095 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 157175 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 204228 25239110 ~ 25241770 (-)
G104750 NA non-coding upstream 208590 25243472 ~ 25245244 (-)
G105092 NA non-coding upstream 798397 25833279 ~ 25836038 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 260656 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 313449 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 362839 24631639 ~ 24661978 (-)
sipa1l3 sipa1l3 other downstream 450142 24480302 ~ 24574675 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other downstream 1286038 23732870 ~ 23738779 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other upstream 8904 25043786 ~ 25079512 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other upstream 350443 25385325 ~ 25548928 (-)
G105376 NA other upstream 1204448 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 1534203 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 2110006 27144888 ~ 27160099 (-)

Expression


Co-expression Network