Gene
RNA
| Item | Value |
|---|---|
| gene id | leo1 |
| gene name | leo1,LOC102793363 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 51413 ~ 60361 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| leo1 | Predicted to enable RNA polymerase II C-terminal domain phosphoserine binding activity. Acts upstream of or within several processes, including animal organ development; melanocyte differentiation; and xanthophore differentiation. Located in nucleus. Part of Cdc73/Paf1 complex. Is expressed in brain; eye; immature eye; pharyngeal arch; and somite. Orthologous to human LEO1 (LEO1 homolog, Paf1/RNA polymerase II complex component). |
| description |
|---|
| PREDICTED: RNA polymerase-associated protein LEO1 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0021782 | glial cell development | biological_process |
| GO:0021529 | spinal cord oligodendrocyte cell differentiation | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0050936 | xanthophore differentiation | biological_process |
| GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | biological_process |
| GO:0014032 | neural crest cell development | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0048701 | embryonic cranial skeleton morphogenesis | biological_process |
| GO:0016593 | Cdc73/Paf1 complex | cellular_component |
| id | description |
|---|---|
| K15177 | LEO1; RNA polymerase-associated protein LEO1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034305551.1 | True | 2128 | mRNA | 0.56 | 12 | 51413 | 60361 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113534766 | mapk6,LOC107747613,LOC107550634,LOC107704268,LOC107700590,LOC107588533 | coding | downstream | 31844 | 6409 ~ 19569 (-) |
| scg3 | scg3,LOC107700587,LOC107550625,LOC107588544 | coding | upstream | 56202 | 116563 ~ 136463 (-) |
| LOC113534665 | NA | coding | upstream | 79909 | 140270 ~ 141515 (-) |
| LOC117597506 | NA | coding | upstream | 93706 | 154067 ~ 155144 (-) |
| LOC117597586 | NA | coding | upstream | 116752 | 177113 ~ 177644 (-) |
| tnfaip8l3 | tnfaip8l3,LOC107746937,LOC107588557,LOC107700582,LOC107704263,LOC107550628 | coding | upstream | 138612 | 198973 ~ 223384 (-) |
| G91764 | NA | non-coding | upstream | 23934 | 84295 ~ 85545 (-) |
| G91786 | LOC108237865,LOC106563385,LOC106560410,LOC106599233,LOC106566551,LOC106561221,LOC106564134,LOC106572279 | non-coding | upstream | 123173 | 183534 ~ 183796 (-) |
| G91873 | NA | non-coding | upstream | 238186 | 298547 ~ 299097 (-) |
| G92197 | NA | non-coding | upstream | 332671 | 393032 ~ 395264 (-) |
| LOC117597554 | NA | non-coding | upstream | 429201 | 489562 ~ 490796 (-) |
| LOC113534658 | NA | other | upstream | 83064 | 143425 ~ 144961 (-) |
| dmxl2 | dmxl2 | other | upstream | 205846 | 266207 ~ 323940 (-) |
| G92240 | NA | other | upstream | 646389 | 706750 ~ 747530 (-) |
| usp8 | LOC107665382,LOC107595392 | other | upstream | 722549 | 782910 ~ 802212 (-) |
| slc27a2a | LOC108264486 | other | upstream | 774755 | 835116 ~ 846935 (-) |
