LOC113526826


Basic Information

Item Value
gene id LOC113526826
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29273077 ~ 29280183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402809.2
cactgtctgtgtggtgttttgcatgttctccctgtgcttgcACAGGTTTCCTGTGGGTTCTCTGGTTGCCTCCCACTGGCCGAAACATGCATGTATGCAGACTGTGcatgtgtacatggtgccctgctATGGACTGCACCCCATCTGAAGTGAATTCTTTCATACAGcgtttctgggataggctccggaccCACTGCGACTCTGAAGGGATTTTATCATACTGTTTATCATAGAGTTATTTTATCACAGtacCTGCTAAGTGTGTAGAAGAAGAGGACCAGGAAGAAGAAGATATTGTAGTAACAAATTTGGACTCAGCCTACAATGCGTGTCTtgggactgggggaggaaatcGGATGTACCCAGATGAAACCCcagaagcacggggagaacatgcaagctgcGTAAACCCAGTTTCCTAGTTTCTTATGTCTTTATCaatttttttagaaacaatTGTACCGCTCTTTTTAAATGTCTAACCGATTTcacagtgctttctttctttcgcaTTTTAGATTCGCGTGACTCACACGGAGACACGGTGTCTGGGGTCTTTGTGATTGACGCGTCATTAAAAATGTGCATGTTCCAGGAGTGGGCTCTGGATCtgccgtgaccctgaccaagacgACACGGTTGCTGGAAGACACTACTATTTCTACTGGCCCGGTATTAGGATTGTCGAACCTTCTCCCCATACTAAAGAGATTCCCCTCCACAGGAAGGAGCAGGAGAGCAGCGTTCTCAGGGCCCACTGTTCTTAGGAAAGCCATCACATGATGAAGTGTTGAGTGAACTGACAGGTCCAATGCCTTCTCAGTGCGATGCAGAGATTTGGACCATCACTGACTGTGACAGCACGGCTTAACTCACTAATCCCATCTGCGCTGGTGGGGGAATACACACCCCGCTTTCACTTAAACGTGatatattcacacatttacactgtGAATTAATGAACCCTTTAATTCCAGctaatttgtgctttttgttaTATTCCAAGTCTGATTGATATTCATGCtggaataataaacacaaacctACGAGTGAAATATCAGattcctatttttttaaagtcacgTCATCGTTTCTATTCATGGGGACATGTGTGATGGACACTCCATATTTAAACCCAATTATAAACTGGgtgttgttattaatgtgttGTTAgacaacaaataaacatttgtgttattgttcatatgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402809.2 True 1209 lncRNA 0.44 4 29273077 29280183

Neighbor

gene id symbol gene type direction distance location
mafa maf,LOC102790406,LOC101173775,LOC102192535,LOC102298902,LOC100702616,LOC107381304 coding downstream 67634 29192381 ~ 29205443 (-)
LOC113526432 cdyl2,LOC106562298 coding downstream 420441 28808107 ~ 28852636 (-)
cenpn cenpn coding downstream 473714 28791791 ~ 28799363 (-)
atmin atmin coding downstream 482267 28782024 ~ 28790810 (-)
LOC113526572 LOC108264241 coding downstream 499037 28769625 ~ 28774040 (-)
ppfibp2a LOC108264606,LOC108434021 coding upstream 14703 29294886 ~ 29330953 (-)
syt9a syt9a,LOC108264032,LOC108433937,LOC107728097,LOC107567811,LOC107663989,LOC107689032,LOC107554003,LOC107741892 coding upstream 65152 29345335 ~ 29369551 (-)
spon1a spon1,spon1a,LOC107741890 coding upstream 118421 29398604 ~ 29479432 (-)
kiaa1549lb LOC108264854,LOC108433503 coding upstream 319402 29599585 ~ 29657809 (-)
lrch3 lrch3,LOC103027580 coding upstream 446907 29727090 ~ 29766747 (-)
G106951 NA non-coding downstream 70233 29202007 ~ 29202844 (-)
G106772 NA non-coding downstream 467647 28805033 ~ 28805430 (-)
G106713 NA non-coding downstream 494059 28764739 ~ 28779018 (-)
G106705 NA non-coding downstream 511340 28761518 ~ 28761737 (-)
G106682 NA non-coding downstream 563507 28707899 ~ 28709570 (-)
G107193 NA non-coding upstream 400080 29680263 ~ 29707900 (-)
G107191 NA non-coding upstream 443931 29724114 ~ 29724377 (-)
G107210 NA non-coding upstream 485193 29765376 ~ 29844857 (-)
G107217 NA non-coding upstream 642559 29922742 ~ 29923193 (-)
G107510 NA non-coding upstream 1029664 30309847 ~ 30311846 (-)
si:dkey-151j17.4 NA other downstream 2112978 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 2664738 26569085 ~ 26608339 (-)
G105376 NA other downstream 3032072 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 3724149 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 4193565 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 340616 29620799 ~ 29714001 (-)
G107525 NA other upstream 1063348 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 1447861 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 1505410 30785593 ~ 30849697 (-)
G107803 NA other upstream 1536396 30816579 ~ 30820422 (-)

Expression


Co-expression Network