LOC117597513


Basic Information

Item Value
gene id LOC117597513
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3406145 ~ 3422158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578300.1
CGCTCGTATACGAACCCGTCTAACGCCGCGTCAGCTCAAACACGGAAACGCGTCAGCACACAACCGGAAGCGGAAGTTCATGAAGGAGAAGatgggAAAGCATCACAGACAGCTGTCGTCCCACTTCACTGAAGGCCACTGTGAGTCCGGGGAAAACATCCGGAGCGAGTGAGCGAGGGAGAGACAGCTGAAACGTGTCAAATGCTGGACATGTCGCATAGctgagagagACCCATGTGATGTAAGAGCTGCATTCCTGAGAGACGAGTGGAGCGGATTCCTCGAGCGAGCCGCTCACAGGAGCGCAGTGCTGCTGGGGGAATGGAAAGCCGAGGGCCTCCCCCTGTTTCCACACTGCCATGATGAGAAAGGAAAGAGGCCAGTCATCCTGACAGGAGGCTCTGCCATGCGGAAAGGAAagtaacacacaccatcacaccctGCACGCTGAACTGAAAGTGGGAGGCGGTGTGATAGCACTGCCAGGAggaaacacaactacacactgtatCAATCAACAAACGGTTACATTTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578300.1 True 536 lncRNA 0.54 3 3406145 3422158

Neighbor

gene id symbol gene type direction distance location
tiparp tiparp,LOC107711769,LOC107566587,LOC107745418,LOC107570705 coding downstream 7617 3367401 ~ 3398528 (-)
lekr1 LOC108264582,LOC108264140 coding downstream 114909 3243210 ~ 3291236 (-)
ptx3a ptx3 coding downstream 276756 3123317 ~ 3129389 (-)
LOC113534302 LOC108264856,LOC108432364 coding downstream 337844 3064670 ~ 3068301 (-)
LOC113534536 LOC108264856,LOC108432364 coding downstream 344650 3056704 ~ 3061495 (-)
LOC113534786 LOC108264139,LOC108437982 coding upstream 127923 3550081 ~ 3559163 (-)
gmps gmps coding upstream 140168 3562326 ~ 3584100 (-)
LOC113534660 LOC108263992,LOC108263974,LOC108437989,LOC108434102,LOC108437987 coding upstream 343771 3765929 ~ 3771200 (-)
LOC113534571 LOC108264136,LOC108264184,LOC108264127,LOC108264128,LOC108264116,LOC108264183,LOC108264134 coding upstream 358222 3780380 ~ 3783481 (-)
LOC113534753 LOC108264184,LOC108264136,LOC108264128,LOC108264116,LOC108264127,LOC108264183,LOC108264134 coding upstream 365086 3787244 ~ 3792996 (-)
G93380 NA non-coding downstream 38950 3366721 ~ 3367195 (-)
G93339 NA non-coding downstream 170493 3227269 ~ 3235652 (-)
G93353 NA non-coding downstream 190680 3215259 ~ 3215465 (-)
G93350 NA non-coding downstream 194022 3211868 ~ 3212123 (-)
G93349 NA non-coding downstream 194341 3211591 ~ 3211804 (-)
G93505 NA non-coding upstream 2865 3425023 ~ 3454371 (-)
G93557 NA non-coding upstream 156859 3579017 ~ 3581206 (-)
G93639 NA non-coding upstream 312939 3735097 ~ 3735392 (-)
LOC113534402 NA non-coding upstream 522829 3944987 ~ 3946376 (-)
G93707 NA non-coding upstream 733099 4155257 ~ 4155497 (-)
G93047 NA other downstream 637847 2759612 ~ 2768298 (-)
G93046 NA other downstream 654976 2749388 ~ 2751169 (-)
fam214a fam214a other downstream 1275355 2035941 ~ 2130790 (-)
onecut1 onecut1 other downstream 1296210 2091734 ~ 2109935 (-)
LOC113534649 LOC108264477 other downstream 1391180 1995031 ~ 2014965 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other upstream 3560 3425718 ~ 3548751 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other upstream 648642 4070800 ~ 4073533 (-)
G93711 LOC101487076 other upstream 751130 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 794860 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 2217538 5639696 ~ 5642949 (-)

Expression


Co-expression Network