LOC117597514


Basic Information

Item Value
gene id LOC117597514
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28259697 ~ 28261304 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578301.1
GACTGAGCGTCTCCTCTCACactagacacacacattcattttgattataacatttttaaatttcagaggGTCTCTGCGGTGGGACCTTGATGTCTAAGTCATCACTCTAGACTTCACCAACTCGCAGAGGTCGAATGAAGACTGATCTATATGCAAAATGACAGAGAAAACACACTGCATTTCTCTCACACAGCACTGAGACGCTGCAATGCTGTGAAGGCAACTTGGAGTTTTGTCCATCAGCAGGACATCAGGCATGATGGTTAAGGAATAAAAGATTTGGTGGTGTGCTGgtctgggaaaataatcagcaacgtagtggtgtgatgcaacccAATGTGAAaaaaccTGCCAGAAAGGTTTTGAGGGCATCTGGCTGAGACTAAAGGTGTTCACTGGGACTGGGATCCAGCGAGACACAATGAAAAAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578301.1 True 432 lncRNA 0.44 3 28259697 28261304

Neighbor

gene id symbol gene type direction distance location
foxf1 foxf1 coding downstream 26310 28229438 ~ 28233387 (-)
LOC113526564 dbndd1 coding downstream 54071 28183533 ~ 28205626 (-)
LOC113526894 LOC108263898 coding downstream 319875 27925890 ~ 27939822 (-)
zdhhc7 zdhhc7,LOC108435925,LOC107573093,LOC107705792,LOC107736389,LOC107686620,LOC107601043 coding downstream 381078 27865109 ~ 27878619 (-)
cog8 cog8,LOC107686577,LOC107573089,LOC107600188 coding downstream 400336 27854836 ~ 27859361 (-)
irf8 irf8 coding upstream 153831 28415135 ~ 28422985 (-)
dusp22a ds22a,LOC105892932,LOC108434600,LOC106562285 coding upstream 162493 28423797 ~ 28446938 (-)
LOC113526963 LOC108264246,LOC107731261,LOC107663352,LOC107565335,LOC107572641,LOC108412231,LOC103374647 coding upstream 187435 28448739 ~ 28452315 (-)
gse1 gse1 coding upstream 206454 28467758 ~ 28711935 (-)
LOC113526572 LOC108264241 coding upstream 508321 28769625 ~ 28774040 (-)
G106356 NA non-coding downstream 161703 28097773 ~ 28097994 (-)
G106319 NA non-coding downstream 180822 28038090 ~ 28078875 (-)
G106336 NA non-coding downstream 188827 28069599 ~ 28070870 (-)
G106269 NA non-coding downstream 291496 27967982 ~ 27968201 (-)
G106265 NA non-coding downstream 293446 27965063 ~ 27966251 (-)
G106653 NA non-coding upstream 338815 28600119 ~ 28601535 (-)
G106655 NA non-coding upstream 343009 28604313 ~ 28605437 (-)
G106656 NA non-coding upstream 344954 28606258 ~ 28608041 (-)
G106657 NA non-coding upstream 347642 28608946 ~ 28609764 (-)
G106660 NA non-coding upstream 352963 28614267 ~ 28614543 (-)
si:dkey-151j17.4 NA other downstream 1099598 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 1651358 26569085 ~ 26608339 (-)
G105376 NA other downstream 2018692 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 2710769 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 3180185 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 1359495 29620799 ~ 29714001 (-)
G107525 NA other upstream 2082227 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 2466740 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 2524289 30785593 ~ 30849697 (-)
G107803 NA other upstream 2555275 30816579 ~ 30820422 (-)

Expression


Co-expression Network